Issue 1/2022
Content (51 Articles)
Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces
Seung-Min Yang, Eiseul Kim, Woojung Lee, Hae-Yeong Kim
Changes in the gut bacterial communities in colon cancer surgery patients: an observational study
Mohamed Abbas, Nadia Gaïa, Nicolas C. Buchs, Vaihere Delaune, Myriam Girard, Diego O. Andrey, Jeremy Meyer, Jacques Schrenzel, Frédéric Ris, Stephan Harbarth, Vladimir Lazarevic
Influence of lincomycin-spectinomycin treatment on the outcome of Enterococcus cecorum infection and on the cecal microbiota in broilers
Jana Schreier, Daniela Karasova, Magdalena Crhanova, Ivan Rychlik, Silke Rautenschlein, Arne Jung
Myxopyronin B inhibits growth of a Fidaxomicin-resistant Clostridioides difficile isolate and interferes with toxin synthesis
Madita Brauer, Jennifer Herrmann, Daniela Zühlke, Rolf Müller, Katharina Riedel, Susanne Sievers
Impact of azithromycin mass drug administration on the antibiotic-resistant gut microbiome in children: a randomized, controlled trial
Harry Pickering, John D. Hart, Sarah Burr, Richard Stabler, Ken Maleta, Khumbo Kalua, Robin L. Bailey, Martin J. Holland
Closely related Salmonella Derby strains triggered distinct gut microbiota alteration
Xiaohui Yuan, Han Xue, Xiaomeng Xu, Xinan Jiao, Zhiming Pan, Yunzeng Zhang
Obesity is not associated with adverse outcomes among hospitalized patients with Clostridioides difficile infection
Alyyah Malick, Ying Wang, Jordan Axelrad, Hojjat Salmasian, Daniel Freedberg
Curcumin assists anti-EV71 activity of IFN-α by inhibiting IFNAR1 reduction in SH-SY5Y cells
Yanfang Wang, Kena Dan, Xiaoling Xue, Bangtao Chen, Cheng Chen
Investigation and characterization of human gut phageome in advanced liver cirrhosis of defined etiologies
Mohadeseh Naseri, Fahimeh Palizban, Abbas Yadegar, Mohsen Khodarahmi, Hamid Asadzadeh Aghdaei, Hamidreza Houri, Javad Zahiri
Virulence genes expression profiling of different Shigella flexneri serotypes in response to sub-inhibitory concentrations of azithromycin and ciprofloxacin
Mehrzad Sadredinamin, Mahdi Shabani, Abdollah Karimi, Mohammad-Reza Sohrabi, Mohammadmahdi Karimi-Yazdi, Zohreh Ghalavand, Masoud Alebouyeh
Bi-directional elucidation of Lactiplantibacillus plantarum (RTA 8) intervention on the pathophysiology of gut-brain axis during Salmonella brain infection
Amrita Kaur, Indu Pal Kaur, Kanwaljit Chopra, Praveen Rishi
Changing serotypes of hand, foot and mouth disease in Shanghai, 2017–2019
Linjie Hu, Hairenguli Maimaiti, Lu Zhou, Jie Gao, Yihan Lu
Exosomal CagA from Helicobacter pylori aggravates intestinal epithelium barrier dysfunction in chronic colitis by facilitating Claudin-2 expression
Yinjie Guo, Canxia Xu, Renjie Gong, Tingzi Hu, Xue Zhang, Xiaoran Xie, Jingshu Chi, Huan Li, Xiujuan Xia, Xiaoming Liu
Antimicrobial resistance patterns and genetic elements associated with the antibiotic resistance of Helicobacter pylori strains from Shanghai
Yixin Liu, Su Wang, Feng Yang, Wenjing Chi, Li Ding, Tao Liu, Feng Zhu, Danian Ji, Jun Zhou, Yi Fang, Jinghao Zhang, Ping Xiang, Yanmei Zhang, Hu Zhao
A prospective investigation into the association between the gut microbiome composition and cognitive performance among healthy young adults
Kolade Oluwagbemigun, Maike E. Schnermann, Matthias Schmid, John F. Cryan, Ute Nöthlings
Enterotoxigenic Bacteroides fragilis activates IL-8 expression through Stat3 in colorectal cancer cells
Rachel V. Purcell, Jessica Permain, Jacqueline I. Keenan
Reduction of gastrointestinal tract colonization by Klebsiella quasipneumoniae using antimicrobial protein KvarIa
Indre Karaliute, Rima Ramonaite, Jurga Bernatoniene, Vilma Petrikaite, Audrius Misiunas, Erna Denkovskiene, Ausra Razanskiene, Yuri Gleba, Juozas Kupcinskas, Jurgita Skieceviciene
Virulence and phylogenetic groups of Escherichia coli cultured from raw sewage in Kuwait
Mahdi A. Redha, Noura Al Sweih, M. John Albert
The role of non-Helicobacter pylori bacteria in the pathogenesis of gastroduodenal diseases
Langgeng Agung Waskito, Yudith Annisa Ayu Rezkitha, Ratha-korn Vilaichone, Titong Sugihartono, Syifa Mustika, I Dewa Nyoman Wibawa, Yoshio Yamaoka, Muhammad Miftahussurur
Adverse events of intestinal microbiota transplantation in randomized controlled trials: a systematic review and meta-analysis
Chong Chen, Liyu Chen, Dayong Sun, Cailan Li, Shiheng Xi, Shihua Ding, Rongrong Luo, Yan Geng, Yang Bai
Designing a novel multi-epitope vaccine to evoke a robust immune response against pathogenic multidrug-resistant Enterococcus faecium bacterium
Jyotirmayee Dey, Soumya Ranjan Mahapatra, T. Kiran Raj, Taranjeet Kaur, Parul Jain, Arushi Tiwari, Shubhransu Patro, Namrata Misra, Mrutyunjay Suar
Establishment of a gnotobiotic pig model of Clostridioides difficile infection and disease
Charlotte Nyblade, Viviana Parreno, Peng Zhou, Casey Hensley, Vanessa Oakes, Hassan M. Mahsoub, Kelsey Kiley, Maggie Frazier, Annie Frazier, Yongrong Zhang, Hanping Feng, Lijuan Yuan
Complete genome sequences and genomic characterization of five plasmids harbored by environmentally persistent Cronobacter sakazakii strains ST83 H322 and ST64 GK1025B obtained from powdered infant formula manufacturing facilities
Flavia J. Negrete, Katie Ko, Hyein Jang, Maria Hoffmann, Angelika Lehner, Roger Stephan, Séamus Fanning, Ben D. Tall, Gopal R. Gopinath
Levofloxacin versus clarithromycin for Helicobacter pylori eradication: are 14 day regimens better than 10 day regimens?
Eman T. Azab, Abrar K. Thabit, Sean McKee, Aymen Al-Qiraiqiri
Potential impact of gut Lactobacillus acidophilus and Bifidobacterium bifidum on hepatic histopathological changes in non-cirrhotic hepatitis C virus patients with different viral load
Zeinab Ashour, Rasha Shahin, Zeinab Ali-Eldin, Mohamed El-Shayeb, Tarek El-Tayeb, Salwa Bakr
The gut metagenomics and metabolomics signature in patients with inflammatory bowel disease
Xinwei Xu, Dickson Kofi Wiredu Ocansey, Sanhua Hang, Bo Wang, Samuel Amoah, Chengxue Yi, Xu Zhang, Lianqin Liu, Fei Mao
The emerging role of neutrophilic extracellular traps in intestinal disease
Feng Chen, Yongqiang Liu, Yajing Shi, Jianmin Zhang, Xin Liu, Zhenzhen Liu, Jipeng Lv, Yufang Leng
Genome analysis and virulence gene expression profile of a multi drug resistant Salmonella enterica serovar Typhimurium ms202
Nirmal Kumar Mohakud, Rakesh Kumar Panda, Saumya Darshana Patra, Bikash Ranjan Sahu, Mrinmoy Ghosh, Gajraj Singh Kushwaha, Namrata Misra, Mrutyunjay Suar
Fusobacterium nucleatum promotes the development of acute liver failure by inhibiting the NAD+ salvage metabolic pathway
Pan Cao, Qian Chen, Chunxia Shi, Luwen Wang, Zuojiong Gong
Grape seed and skin extract, a potential prebiotic with anti-obesity effect through gut microbiota modulation
Mohamed Mokrani, Kamel Charradi, Ferid Limam, Ezzedine Aouani, Maria C. Urdaci
Rapid screening for antigenic characterization of GII.17 norovirus strains with variations in capsid gene
Yingyin Liao, Liang Xue, Junshan Gao, Yueting Zuo, Yanhui Liang, Yueting Jiang, Weicheng Cai, Jiale Yang, Jumei Zhang, Yu Ding, Moutong Chen, Aiwu Wu, Xiaoxia Kou, Qingping Wu
Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya
Charles N. Agoti, Martin D. Curran, Nickson Murunga, Moses Ngari, Esther Muthumbi, Arnold W. Lambisia, Simon D. W. Frost, Barbara A. Blacklaws, D. James Nokes, Lydia N. Drumright
The effect of Campylobacter jejuni and Campylobacter coli colonization on the gut morphology, functional integrity, and microbiota composition of female turkeys
Janina Rzeznitzeck, Gerhard Breves, Ivan Rychlik, Frederic J. Hoerr, Alexandra von Altrock, Alexandra Rath, Silke Rautenschlein
Role of fecal calprotectin as a hypoxic intestinal damage biomarker in COVID-19 patients
Deasy Natalia Adriana, Titong Sugihartono, Iswan Abbas Nusi, Poernomo Boedi Setiawan, Herry Purbayu, Ummi Maimunah, Ulfa Kholili, Budi Widodo, Husin Thamrin, Amie Vidyani, Hasan Maulahela, Yoshio Yamaoka, Muhammad Miftahussurur
Comparison of SARS-CoV-2 spike RNA sequences in feces and nasopharynx indicates intestinal replication
Thomas Beck-Friis, Ambjörn Kärmander, Kristina Nyström, Hao Wang, Magnus Gisslén, Lars-Magnus Andersson, Heléne Norder
Clostridioides difficile toxin is infrequently detected in inflammatory bowel disease and does not associate with clinical outcomes
Rachel Bernard, Muhammad B. Hammami, Forest W. Arnold, Brian Mcgrath, Alieysa Patel, Brandon Wuerth, Maribeth R. Nicholson, Krishna Rao, Dejan Micic
Microbiota profile of new-onset celiac disease in children in Saudi Arabia
Mohammad El Mouzan, Abdulrahman Al-Hussaini, Gloria Serena, Asaad Assiri, Ahmed Al Sarkhy, Mohammad Al Mofarreh, Mona Alasmi, Alessio Fasano
Analysis of gastric microbiota and Helicobacter pylori infection in gastroesophageal reflux disease
Titong Sugihartono, Kartika Afrida Fauzia, Muhammad Miftahussurur, Langgeng Agung Waskito, Purwo Sri Rejeki, Reny I’tishom, Ricky Indra Alfaray, Dalla Doohan, Rizki Amalia, Camilia Metadea Aji Savitri, Yudith Annisa Ayu Rezkitha, Junko Akada, Takashi Matsumoto, Yoshio Yamaoka
Effect of crude polysaccharide from seaweed, Dictyopteris divaricata (CDDP) on gut microbiota restoration and anti-diabetic activity in streptozotocin (STZ)-induced T1DM mice
Nimra Zafar Siddiqui, Ata Ur Rehman, Waleed Yousuf, Asif Iqbal khan, Nabeel Ahmed Farooqui, Shizhu Zang, Yi Xin, Liang Wang
Amoxicillin modulates gut microbiota to improve short-term high-fat diet induced pathophysiology in mice
Suresh Kumar, V. Samuel Raj, Ayaan Ahmad, Vikram Saini
Jatrorrhizine alleviates ulcerative colitis via regulating gut microbiota and NOS2 expression
Jia Ling Zhang, Min Na Zhang, Hong Gang Wang, Xiao Zhong Yang, Cheng Gong Yu
Genomes of Vibrio metoecus co-isolated with Vibrio cholerae extend our understanding of differences between these closely related species
Fabini D. Orata, Nora A. S. Hussain, Kevin Y. H. Liang, Dalong Hu, Yann F. Boucher
Helicobacter pylori infection: is there circulating vacuolating cytotoxin A or cytotoxin-associated gene A protein?
Ichiro Imoto, Satoko Oka, Masaki Katsurahara, Misaki Nakamura, Taro Yasuma, Junko Akada, Corina N. D’Alessandro-Gabazza, Masaaki Toda, Noriyuki Horiki, Esteban C. Gabazza, Yoshio Yamaoka
Genomic insights into zoonotic transmission and antimicrobial resistance in Campylobacter jejuni from farm to fork: a one health perspective
Yara El dessouky, Salma W. Elsayed, Nehal Adel Abdelsalam, Nehal A. Saif, Avelino Álvarez-Ordóñez, Mohamed Elhadidy
Comparative genomics of Campylobacter jejuni from clinical campylobacteriosis stool specimens
Bilal Djeghout, Samuel J. Bloomfield, Steven Rudder, Ngozi Elumogo, Alison E. Mather, John Wain, Nicol Janecko
Gut microbiota in the early stage of Crohn’s disease has unique characteristics
Xianzong Ma, Xiaojuan Lu, Wenyu Zhang, Lang Yang, Dezhi Wang, Junfeng Xu, Yan Jia, Xin Wang, Hui Xie, Shu Li, Mingjie Zhang, Yuqi He, Peng Jin, Jianqiu Sheng
Effect of proton pump inhibitors in infants with esophageal atresia on the gut microbiome: a pilot cohort
Nele Brusselaers, Marcela Pereira, Johan Alm, Lars Engstrand, Helene Engstrand Lilja
Metagenomic analysis of the interaction between the gut microbiota and colorectal cancer: a paired-sample study based on the GMrepo database
Han Chen, Jianhua Jiao, Min Wei, Xingzhou Jiang, Ruoyun Yang, Xin Yu, Guoxin Zhang, Xiaoying Zhou
Dietary and lifestyle associations with microbiome diversity
Katherine M. Watson, Kyla N. Siemens, Sudarshan Anand, Ivy H. Gardner, Thomas J. Sharpton, Elizabeth N. Dewey, Robert Martindale, Christopher A. Gaulke, Vassiliki Liana Tsikitis
Using whole-genome sequencing (WGS) to plot colorectal cancer-related gut microbiota in a population with varied geography
Han Shuwen, Wu Yinhang, Zhao Xingming, Zhuang Jing, Liu Jinxin, Wu Wei, Ding Kefeng
Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer
Manon Oliero, Roy Hajjar, Thibault Cuisiniere, Gabriela Fragoso, Annie Calvé, François Dagbert, Rasmy Loungnarath, Herawaty Sebajang, Frank Schwenter, Ramses Wassef, Richard Ratelle, Éric De Broux, Carole S. Richard, Manuela M. Santos