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Archives of Virology

Issue 6/2016

Content (40 Articles)

Original Article

Lineage-specific detection of influenza B virus using real-time polymerase chain reaction with melting curve analysis

Nipaporn Tewawong, Jira Chansaenroj, Sirapa Klinfueng, Preeyaporn Vichiwattana, Sumeth Korkong, Thanunrat Thongmee, Apiradee Theamboonlers, Sunchai Payungporn, Sompong Vongpunsawad, Yong Poovorawan

Original Article

Genotypic evolution and antigenicity of H9N2 influenza viruses in Shanghai, China

Feifei Ge, Xin Li, Houbin Ju, Dequan Yang, Jian Liu, Xinyong Qi, Jian Wang, Xianchao Yang, Yafeng Qiu, Peihong Liu, Jinping Zhou

Original Article

Analysis of the entry mechanism of Crimean-Congo hemorrhagic fever virus, using a vesicular stomatitis virus pseudotyping system

Yuto Suda, Shuetsu Fukushi, Hideki Tani, Shin Murakami, Masayuki Saijo, Taisuke Horimoto, Masayuki Shimojima

Original Article

Stability, biophysical properties and effect of ultracentrifugation and diafiltration on measles virus and mumps virus

Dora Sviben, Dubravko Forčić, Tihana Kurtović, Beata Halassy, Marija Brgles

Original Article

Genetic variability of human adenovirus type 8 causing epidemic and sporadic cases of keratoconjunctivitis

Nadia Fedaoui, Narjess Ben Ayed, Ahlem Ben Yahia, Walid Hammami, Henda Touzi, Henda Triki

Original Article

Association of IFNL3 and IFNL4 polymorphisms with hepatitis C virus infection in a population from southeastern Brazil

Ana Catharina de Seixas Santos Nastri, Fernanda de Mello Malta, Márcio Augusto Diniz, Alessandra Yoshino, Kiyoko Abe-Sandes, Sidney Emanuel Batista dos Santos, André de Castro Lyra, Flair José Carrilho, João Renato Rebello Pinho

Original Article

Generation of E. coli-derived virus-like particles of porcine circovirus type 2 and their use in an indirect IgG enzyme-linked immunosorbent assay

Yan Zhang, Zhanfeng Wang, Yang Zhan, Qian Gong, Wanting Yu, Zhibang Deng, Aibing Wang, Yi Yang, Naidong Wang

Original Article

Genomic variability and molecular evolution of Asian isolates of sugarcane streak mosaic virus

Shan-Shan Liang, Olufemi J. Alabi, Mona B. Damaj, Wei-Lin Fu, Sheng-Ren Sun, Hua-Ying Fu, Ru-Kai Chen, T. Erik Mirkov, San-Ji Gao

Original Article

Phylogenetic analysis of human influenza A/H3N2 viruses isolated in 2015 in Germany indicates significant genetic divergence from vaccine strains

Ahmed Mostafa, El-Sayed M. Abdelwhab, Heiko Slanina, Mohamed A. Hussein, Irina Kuznetsova, Christian G. Schüttler, John Ziebuhr, Stephan Pleschka

Original Article

A novel dengue virus serotype 1 vaccine candidate based on Japanese encephalitis virus vaccine strain SA14-14-2 as the backbone

Huiqiang Yang, Zhushi Li, Hua Lin, Wei Wang, Jian Yang, Lina Liu, Xianwu Zeng, Yonglin Wu, Yongxin Yu, Yuhua Li

Original Article

Development of a direct blood-based PCR system to detect BLV provirus using CoCoMo primers

Shin-nosuke Takeshima, Sonoko Watanuki, Hiroshi Ishizaki, Kazuhiro Matoba, Yoko Aida

Original Article

Functional characteristics of the natural polymorphisms of HIV-1 gp41 in HIV-1 isolates from enfuvirtide-naïve Korean patients

YoungHyun Shin, Cheol-Hee Yoon, Hyo-Jin Yang, Hoyong Lim, Byeong-Sun Choi, Sung Soon Kim, Chun Kang

Original Article

In vitro antiviral effect of germacrone on feline calicivirus

Hongxia Wu, Yongxiang Liu, Shaopo Zu, Xue Sun, Chunguo Liu, Dafei Liu, Xiaozhan Zhang, Jin Tian, Liandong Qu

Original Article

Genetic diversity of bovine papillomavirus types, including two putative new types, in teat warts from dairy cattle herds

Michele Lunardi, Claudia de Camargo Tozato, Alice Fernandes Alfieri, Brígida Kussumoto de Alcântara, Laurival Antonio Vilas-Boas, Rodrigo Alejandro Arellano Otonel, Selwyn Arlington Headley, Amauri Alcindo Alfieri

Original Article

Development of a porcine reproductive and respiratory syndrome virus-like-particle-based vaccine and evaluation of its immunogenicity in pigs

Basavaraj Binjawadagi, Yashavanth Shaan Lakshmanappa, Zhu Longchao, Santosh Dhakal, Jagadish Hiremath, Kang Ouyang, Duan-Liang Shyu, Jesus Arcos, Shang Pengcheng, Aaron Gilbertie, Federico Zuckermann, Jordi B. Torrelles, Daral Jackwood, Ying Fang, Gourapura J. Renukaradhya

Original Article

Phylogenetic analysis of porcine circovirus type 2 (PCV2) isolates from China with high homology to PCV2c

Xing Liu, Feng-Xue Wang, Hong-Wei Zhu, Na Sun, Hua Wu

Original Article

Molecular and biological characterisation of two novel pomo-like viruses associated with potato (Solanum tuberosum) fields in Colombia

Jose Fernando Gil, Ian Adams, Neil Boonham, Steen Lykke Nielsen, Mogens Nicolaisen

Original Article

Diagnostic potential of monoclonal antibodies against the capsid protein of chikungunya virus for detection of recent infection

R. G. Damle, N. Jayaram, S. M. Kulkarni, K. Nigade, K. Khutwad, S. Gosavi, D. Parashar

Original Article

Expression of the env gene from the avian endogenous retrovirus ALVE and regulation by miR-155

Xuming Hu, Wenqi Zhu, Shihao Chen, Yangyang Liu, Zhen Sun, Tuoyu Geng, Xiaoyan Wang, Bo Gao, Chengyi Song, Aijian Qin, Hengmi Cui

Brief Report

Temporal variation in the distribution of type-1 human astrovirus lineages in a settled population over 14 years

Simona De Grazia, Floriana Bonura, Krisztián Bányai, Ákos Gellért, Sandra Marineo, Vito Martella, Giovanni M. Giammanco

Brief Report

Detection of mumps virus genotype H in two previously vaccinated patients from Mexico City

Alberto del Valle, Alí A. García, Blanca L. Barrón

Brief Report

Highly pathogenic influenza H5N1 virus of clade 2.3.2.1c in Western Siberia

V. Y. Marchenko, I. M. Susloparov, N. P. Kolosova, N. I. Goncharova, A. V. Shipovalov, T. N. Ilyicheva, A. G. Durymanov, O. A. Chernyshova, L. I. Kozlovskiy, T. V. Chernyshova, E. N. Pryadkina, T. V. Karimova, V. N. Mikheev, A. B. Ryzhikov

Brief Report

Characterization and occurrence of squash chlorotic leaf spot virus, a tentative new torradovirus infecting cucurbits in Sudan

H. Lecoq, E. Verdin, M. Tepfer, C. Wipf-Scheibel, P. Millot, G. Dafalla, C. Desbiez

Brief Report

Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with increased coding capacity compared to a previously characterized European isolate

Basdeo Bhagwat, Virginia Dickison, Xinlun Ding, Melanie Walker, Michael Bernardy, Michel Bouthillier, Alexa Creelman, Robyn DeYoung, Yinzi Li, Xianzhou Nie, Aiming Wang, Yu Xiang, Hélène Sanfaçon

Brief Report

Amino acid substitutions occurring during adaptation of an emergent H5N6 avian influenza virus to mammals

Xiuming Peng, Haibo Wu, Xiaorong Peng, Xiaoxin Wu, Linfang Cheng, Fumin Liu, Shujing Ji, Nanping Wu

Brief Report

A cluster of salivirus A1 (Picornaviridae) infections in newborn babies with acute gastroenteritis in a neonatal hospital unit in Hungary

Ákos Boros, Margit Raáb, Éva Károly, Adrienn Karai, Andrea Kátai, Nóra Bolba, Péter Pankovics, Gábor Reuter

Brief Report

Detection of West Nile virus and tick-borne encephalitis virus in birds in Slovakia, using a universal primer set

Tomáš Csank, Katarína Bhide, Elena Bencúrová, Saskia Dolinská, Petra Drzewnioková, Peter Major, Ľuboš Korytár, Eva Bocková, Mangesh Bhide, Juraj Pistl

Brief Report

Characterization and phylogenetic analysis of a novel picornavirus from swine feces in Japan

Yuki Naoi, Mai Kishimoto, Tsuneyuki Masuda, Mika Ito, Shinobu Tsuchiaka, Kaori Sano, Hiroshi Yamasato, Tsutomu Omatsu, Hiroshi Aoki, Tetsuya Furuya, Yukie Katayama, Mami Oba, Takashi Okada, Junsuke Shirai, Tetsuya Mizutani, Makoto Nagai

Brief Report

Genomic, pathogenic, and antigenic comparisons of Getah virus strains isolated in 1978 and 2014 in Japan

Manabu Nemoto, Hiroshi Bannai, Koji Tsujimura, Takashi Yamanaka, Takashi Kondo

Brief Report

Detection of variant infectious bronchitis viruses in Sri Lanka (2012-2015)

Christopher Ball, Anne Forrester, Kannan Ganapathy

Annotated Sequence Record

Genome sequence of a novel victorivirus identified in the phytopathogenic fungus Alternaria arborescens

Ken Komatsu, Yukie Katayama, Tsutomu Omatsu, Tetsuya Mizutani, Toshiyuki Fukuhara, Motoichiro Kodama, Tsutomu Arie, Tohru Teraoka, Hiromitsu Moriyama

Annotated Sequence Record

Complete genome analysis of coxsackievirus A24 isolated in Yunnan, China, in 2013

Yilin Zhao, Jiansheng Liu, Haihao Zhang, Chen Guo, Longhui Xia, Fang Yang, Huai Yang, Qinxing Yang, Zhaoqing Yang, Shaohui Ma

Annotated Sequence Record

Complete genome sequence of bean rugose mosaic virus, genus Comovirus

M. H. S. Picoli, A. Garcia, A. A. L. Barboza, Eliezer Rodrigues de Souto, A. M. R. Almeida

Annotated Sequence Record

Complete genome sequence of yam chlorotic necrotic mosaic virus from Dioscorea parviflora

Pengyuan Zhang, Jiejun Peng, Huachun Guo, Jianping Chen, Suiyun Chen, Jianguang Wang

Annotated Sequence Record

Phylogenetic analysis reveals that Japanese encephalitis virus genotype III is still prevalent in swine herds in Sichuan province in China

Rui Wu, Qiao Wang, Hongming Liu, Chunxia Chai, Bo He, Xiaobo Huang, Yiping Wen, Xintian Wen, Qiguai Yan, Xiaoping Ma, Sanjie Cao

Annotated Sequence Record

Complete genome sequence of Xishuangbanna flavivirus, a novel mosquito-specific flavivirus from China

Hang Fan, Qiumin Zhao, Xiaofang Guo, Qiang Sun, Shuqing Zuo, Chao Wu, Hongning Zhou, Xiaoping An, Guangqian Pei, Yigang Tong, Jiusong Zhang, Taoxing Shi

Annotated Sequence Record

Complete nucleotide sequences of a new bipartite begomovirus from Malvastrum sp. plants with bright yellow mosaic symptoms in South Texas

Olufemi J. Alabi, Cecilia Villegas, Lori Gregg, K. Daniel Murray

Annotated Sequence Record

Complete nucleotide sequence of a new begomovirus infecting a malvaceous weed in Brazil

Liliane D. Nascimento, Sarah J. C. Silva, Roberto Ramos Sobrinho, Mayra M. M. Ferro, Maria H. C. Oliveira, Francisco M. Zerbini, Iraildes P. Assunção, Gaus S. A. Lima

Virology Division News

A taxonomy update for the family Polyomaviridae

Sébastien Calvignac-Spencer, Mariet C. W. Feltkamp, Matthew D. Daugherty, Ugo Moens, Torbjörn Ramqvist, Reimar Johne, Bernhard Ehlers