Top

Published in:

01-03-2020 | Annotated Sequence Record

A novel narnavirus from a Saccharomyces cerevisiae flor strain

Authors: Andrey V. Mardanov, Alexey V. Beletsky, Tatiana N. Tanashchuk, Svetlana A. Kishkovskaya, Nikolai V. Ravin

Published in: Archives of Virology | Issue 3/2020

Abstract

A novel virus of the genus Narnavirus, designated “Saccharomyces narnavirus I329” (ScNV-I329), was discovered in Saccharomyces cerevisiae strain I-329, which is used for industrial production of sherry-like wines. The genome of ScNV-I329 is 2509 nt in length with short terminal inverted repeats and a single open reading frame capable of encoding an RNA-dependent RNA polymerase most closely related to that of Saccharomyces 20S RNA narnavirus. This is the third known member of the genus Narnavirus from yeasts.

Wickner RB, Fujimura T, Esteban R (2013) Viruses and prions of Saccharomyces cerevisiae. Adv Virus Res 86:1–36CrossRefPubMedPubMedCentral

Hillman BI, Cai G (2013) The family narnaviridae: simplest of RNA viruses. Adv Virus Res 86:149–176CrossRefPubMed

Hillman BI, Esteban R (2011) Family Narnaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the international committee for the taxonomy of viruses. Elsevier Inc., Amsterdam, pp 1025–1030

Göertz GP, Miesen P, Overheul GJ, van Rij RP, van Oers MM, Pijlman GP (2019) Mosquito small RNA responses to West Nile and insect-specific virus infections in Aedes and Culex mosquito cells. Viruses 11(3):E271CrossRefPubMed

Kadowaki K, Halvorson HO (1971) Appearance of a new species of ribonucleic acid during sporulation in Saccharomyces cerevisiae. J Bacteriol 105:826–830CrossRefPubMedPubMedCentral

Wesolowski M, Wickner RB (1984) Two new double-stranded RNA molecules showing non-mendelian inheritance and heat inducibility in Saccharomyces cerevisiae. Mol Cell Biol 4:181–187CrossRefPubMedPubMedCentral

López V, Gil R, Vicente Carbonell J, Navarro A (2002) Occurrence of 20S RNA and 23S RNA replicons in industrial yeast strains and their variation under nutritional stress conditions. Yeast 19(6):545–552CrossRefPubMed

Nakayashiki T, Kurtzman CP, Edskes HK, Wickner RB (2005) Yeast prions [URE3] and [PSI+] are diseases. Proc Natl Acad Sci USA 102:10575–10580CrossRefPubMedPubMedCentral

Alexandre H (2013) Flor yeasts of Saccharomyces cerevisiae-their ecology, genetics and metabolism. Int J Food Microbiol 167:269–275CrossRefPubMed

10.

Eldarov MA, Beletsky AV, Tanashchuk TN, Kishkovskaya SA, Ravin NV, Mardanov AV (2018) Whole-genome analysis of three yeast strains used for production of sherry-like wines revealed genetic traits specific to flor yeasts. Front Microbiol 9:965CrossRefPubMedPubMedCentral

11.

Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477CrossRefPubMedPubMedCentral

12.

Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797PubMedPubMedCentral

13.

Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972–1973CrossRefPubMedPubMedCentral

14.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321CrossRefPubMed

Title: A novel narnavirus from a Saccharomyces cerevisiae flor strain
Authors: Andrey V. Mardanov
Alexey V. Beletsky
Tatiana N. Tanashchuk
Svetlana A. Kishkovskaya
Nikolai V. Ravin
Publication date: 01-03-2020
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 3/2020
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-020-04539-0

ACC 2024 Congress Coverage

Heart Failure Video

Keynote webinar | Spotlight on sleep in brain health

Springer Medicine

A novel narnavirus from a Saccharomyces cerevisiae flor strain

Abstract

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page

Keynote webinar | Spotlight on sleep in brain health

Springer Medicine

Abstract

Please log in to get access to this content

Other articles of this Issue 3/2020

Characterization of a novel echovirus 21 strain isolated from a healthy child in China in 2013

A new polycipivirus identified in Colobopsis shohki

Prion protein PrP nucleic acid binding and mobilization implicates retroelements as the replicative component of transmissible spongiform encephalopathy

Development of a cross-priming isothermal amplification assay based on the glycoprotein B gene for instant and rapid detection of feline herpesvirus type 1

Complete genome sequence of MMP7, a novel Meiothermus bacteriophage of the family Myoviridae isolated from a hot spring

Molecular characterization of two previously undescribed begomovirus-associated alphasatellite molecules infecting malvaceous species in Cameroon

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page