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Published in: Archives of Virology 9/2013

01-09-2013 | Annotated Sequence Record

Complete genome sequence of a South Korean isolate of Brugmansia mosaic virus

Authors: Fumei Zhao, Seungmo Lim, Ran Hee Yoo, Hyoun-Sub Lim, Suk-Yoon Kwon, Su-Heon Lee, Jae Sun Moon

Published in: Archives of Virology | Issue 9/2013

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Abstract

We determined the complete genome sequence of a South Korean (SK) isolate of Brugmansia mosaic virus (BruMV), which has recently been proposed to be a member of a new species in the genus Potyvirus. The genomic RNA of BruMV isolate SK is 9781 nucleotides in length (excluding the 3′-terminal poly (A)) and shares complete nucleotide and polyprotein amino acid sequence identities of 85.6 % and 93.1 %, respectively, with the type isolate (D-437) of BruMV described in the USA. To our knowledge, this is the first report providing evidence of considerable sequence variation in BruMV.
Literature
1.
go back to reference Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B (2005) Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci USA 102:12891–12896PubMedCrossRef Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B (2005) Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci USA 102:12891–12896PubMedCrossRef
2.
go back to reference Chen J, Chen J, Adams MJ (2001) A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Arch Virol 146:757–766PubMedCrossRef Chen J, Chen J, Adams MJ (2001) A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Arch Virol 146:757–766PubMedCrossRef
3.
go back to reference Chung BY, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897–5902PubMedCrossRef Chung BY, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897–5902PubMedCrossRef
4.
go back to reference Damsteegt VD, Stone AL, Smith OP, McDaniel L, Sherman DJ, Dardick C, Hammond J, Jordan R, Schneider WL (2013) A previously undescribed potyvirus isolated and characterized from arborescent Brugmansia. Arch Virol (in press) doi: 10.1007/s00705-012-1600-8 Damsteegt VD, Stone AL, Smith OP, McDaniel L, Sherman DJ, Dardick C, Hammond J, Jordan R, Schneider WL (2013) A previously undescribed potyvirus isolated and characterized from arborescent Brugmansia. Arch Virol (in press) doi: 10.​1007/​s00705-012-1600-8
5.
go back to reference Gubler U, Hoffman BJ (1983) A simple and very efficient method for generating cDNA libraries. Gene 25:263–269PubMedCrossRef Gubler U, Hoffman BJ (1983) A simple and very efficient method for generating cDNA libraries. Gene 25:263–269PubMedCrossRef
6.
go back to reference Kadaré G, Haenni AL (1997) Virus-encoded RNA helicases. J Virol 71:2583–2590PubMed Kadaré G, Haenni AL (1997) Virus-encoded RNA helicases. J Virol 71:2583–2590PubMed
7.
go back to reference Kahn RP, Bartels R (1968) The Colombian datura virus—a new virus in the potato virus Y group. Phytopathology 58:587–592 Kahn RP, Bartels R (1968) The Colombian datura virus—a new virus in the potato virus Y group. Phytopathology 58:587–592
8.
go back to reference Lucinda N, Nagata T, Inoue-Nagata AK, Salaroli RB, Kitajima EW (2008) Brugmansia suaveolens mottle virus, a novel potyvirus causing leaf mottling of Brugmansia suaveolens in Brazil. Arch Virol 153:1971–1976PubMedCrossRef Lucinda N, Nagata T, Inoue-Nagata AK, Salaroli RB, Kitajima EW (2008) Brugmansia suaveolens mottle virus, a novel potyvirus causing leaf mottling of Brugmansia suaveolens in Brazil. Arch Virol 153:1971–1976PubMedCrossRef
9.
go back to reference Nam M, Kim SM, Domier LL, Koh S, Moon JK, Choi HS, Kim HG, Moon JS, Lee SH (2009) Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean. Arch Virol 154:1679–1684PubMedCrossRef Nam M, Kim SM, Domier LL, Koh S, Moon JK, Choi HS, Kim HG, Moon JS, Lee SH (2009) Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean. Arch Virol 154:1679–1684PubMedCrossRef
10.
go back to reference Riechmann JL, Lain S, Garcia JA (1992) Highlights and prospects of potyvirus molecular biology. J Gen Virol 73:1–16PubMedCrossRef Riechmann JL, Lain S, Garcia JA (1992) Highlights and prospects of potyvirus molecular biology. J Gen Virol 73:1–16PubMedCrossRef
11.
go back to reference Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCrossRef Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCrossRef
12.
go back to reference Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680PubMedCrossRef Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680PubMedCrossRef
Metadata
Title
Complete genome sequence of a South Korean isolate of Brugmansia mosaic virus
Authors
Fumei Zhao
Seungmo Lim
Ran Hee Yoo
Hyoun-Sub Lim
Suk-Yoon Kwon
Su-Heon Lee
Jae Sun Moon
Publication date
01-09-2013
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 9/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1693-8

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