Skip to main content
Key Specialties
Cardiology Diabetology Endocrinology Gastroenterology Geriatrics and Gerontology Gynecology and Obstetrics Hematology Infectious Disease Internal Medicine Nephrology Neurology Oncology Pediatrics Respiratory Medicine Rheumatology Surgery
Congress Coverage
2024 ACC Congress 2023 ESMO Congress 2023 EASD Congress 2023 ERS Congress 2023 ESC Congress
Clinical Collections
Advances in Alzheimer’s

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.
ADVANCED SEARCH
Log in
Top
Archives of Virology
Published in: Archives of Virology 9/2013

01-09-2013 | Original Article

Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae

Authors: Dimitre Mollov, Ben Lockhart, David Zlesak

Published in: Archives of Virology | Issue 9/2013

Login to get access

Abstract

The complete genomic sequence of rose yellow mosaic virus (RoYMV) was determined and found to have all the features that are characteristic of members of the family Potyviridae. The RoYMV genome is 9508 nucleotides long excluding the 3′-poly-(A) tail and contains a single open reading frame encoding a polyprotein of 3067 amino acids. The RoYMV P3 and CI cistrons are shorter than those of other members of the family Potyviridae, and the 6K1 cistron is completely absent. Comparative sequence analysis revealed that RoYMV had highest amino acid sequence identity across the entire genome sequence to brome streak mosaic virus (33 %) and to turnip mosaic virus (30 %) at the coat protein level. Based on its low sequence similarity to known members of the family Potyviridae and phylogenetic analysis, RoYMV appears to be a distinct, previously undescribed, member of this family.
Literature
1.
Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487PubMedCrossRef
2.
Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef
3.
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402PubMedCrossRef
4.
Brigneti G, Vionnet O, Li WX, Ji LH, Ding SW, Baulcombe DC (1998) Viral pathogenicity determinants are supressors of transgene silencing in Nicotiana benthamiana. EMBO 17:6739–6746CrossRef
5.
Combet C, Blanchet C, Geourjon C, Deléage G (2000) Network protein sequence analysis. TIBS 25:147–150PubMed
6.
French R, Stenger DC (2005) Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus in the family Potyviridae. Arch Virol 150:299–312PubMedCrossRef
7.
Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acid Res 20:2900PubMedCrossRef
8.
Ghotbi T, Shahraeen N, Winter S (2005) Occurrence of Tospoviruses in ornamental and weed species in Markazi and Tehran provinces in Iran. Plant Dis 89:425–429CrossRef
9.
Gibbs AJ, Ohshima K, Phillips MJ, Gibbs MJ (2008) The prehistory of Potyviruses: their initial radiation was during the dawn of agriculture. PLoS One 3:e2523PubMedCrossRef
10.
Horst RK, Cloyd RD (eds) (2007) Compendium of rose diseases and pests, vol 2. APS Press, St. Paul
11.
Huet H, Gal-On A, Meir E, Lecoq H, Raccah B (1994) Mutations in the helper component protease gene of Zucchini yellow mosaic virus affects its ability to mediate aphid transmissibility. J Gen Virol 75:1407–1414PubMedCrossRef
12.
ICTV (2011) International Committee on Taxonomy of Viruses. Virus Taxonomy: 2011 Release
13.
Kadare G, Haenni AL (1997) Virus encoded RNA helicases. J Virol 71:2583–2590PubMed
14.
King AMQ, Lefkowitz E, Adams MJ, Castens EB (eds) (2012) Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses, vol 9. Academic Press, London
15.
Kondo T, Fujita T (2012) Complete nucleotide sequence and construction of an infectious clone of Chinese yam necrotic mosaic virus suggest that macluraviruses have the smallest genome among members of the family Potyviridae. Arch Virol 157:2299–2307PubMedCrossRef
16.
Krüssmann G (ed) (1981) The Complete Book of Roses. Timber Press, Portland
17.
Laney AG, Keller KE, Martin RR, Tzanetakis IE (2011) A discovery 70 years in the making: characterization of the Rose rosette virus. J Gen Virol 92:1727–1732PubMedCrossRef
18.
Li WX, Hilf ME, Webb SE, Baker CA, Adkins S (2008) Presence of P1b and absence of HC-Pro in Squash vein yellowing virus suggests a general feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135:213–219PubMedCrossRef
19.
Lockhart B, Zlesak D, Fetzer J (2011) Identification and partial characterization of six new viruses of cultivated roses in the USA. Acta Horticulturae 901:139–147
20.
Lopez-Moya JJ, Wang RY, Pirone TP (1999) Contex of the coat protein DAG motif affects potyvirus transmissibility by aphids. J Gen Virol 80:3281–3288PubMed
21.
Martin RR, Tzanetakis IE (2008) First Report of Rosa multiflora cryptic virus in Rosa multiflora in the Eastern United States. Plant Dis 92:1706CrossRef
22.
Rivera PA, Engel EA (2010) Presence of rose spring dwarf-associated virus in Chile: partial genome sequence and detection in roses and their colonizing aphids. Virus Genes 41:295–297PubMedCrossRef
23.
24.
Sabanadzovic S, Sabanadzovic NA (2008) Molecular characterization and detection of a tripartite cryptic virus from rose. J Plant Pathol 90:287–293
25.
Salem N, Rowhani A, Moyne AL, Sim ST, Golino DA (2007) Identification of a Luteovirus associated with rose spring dwarf disease in roses. Acta Horticulturae 751:213–216
26.
Salem NM, Golino DA, Falk BW, Rowhani A (2008) Complete nucleotide sequences and genome characterization of a novel double-stranded RNA virus infecting Rosa multiflora. Arch Virol 153:455–462PubMedCrossRef
27.
Shahraeen N, Ghotbi T, Mehraban AH (2002) Occurrence of Impatiens necrotic spot virus in ornamentals in Mahallat and Tehran provinces in Iran. Plant Dis 86:694CrossRef
28.
Stenger DC, French R (2004) Complete nucleotide sequence of Oat necrotic mottle virus: A distinct Tritimovirus species (family Potyviridae) most closely related to Wheat streak mosaic virus. Arch Virol 149:633–640PubMedCrossRef
29.
Susaimuthu J, Tzanetakis IE, Gergerich RC, Martin RR (2008) A member of a new genus in the Potyviridae infects Rubus. Virus Res 131:145–151PubMedCrossRef
30.
Takeshita M, Koizumi E, Noguchi M, Sueda K, Shimura H, Ishikawa N, Matsuura H, Ohshima K, Natsuaki T, Kuwata S, Furuya N, Tsuchiya K, Masuta C (2012) Infection dynamics in viral spread and interference under the synergism between Cucumber mosaic virus and Turnip mosaic virus. MPMI 25:18–27PubMedCrossRef
31.
Tamura K, Peterson D, Peterson N, Stecher G, MN M, Kumar S (2011) Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCrossRef
32.
Tatineni S, Ziems AD, Wegulo SN, French R (2009) Triticum mosaic virus: a distinct member of the family Potyviridae with an unusually long leader sequence. Phytopathology 99:943–950PubMedCrossRef
33.
Tatineni S, Qu F, Li R, Morris TJ, French R (2012) Triticum mosaic poacevirus enlists P1 rather than HC-Pro to suppress RNA silencing-mediated host defense. Virology 433:104–115PubMedCrossRef
34.
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res 22:4673–4680PubMedCrossRef
35.
Tzanetakis IE, Gergerich RC, Martin RR (2006) A new Ilarvirus found in rose. Plant Pathol 55:568CrossRef
36.
Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175PubMedCrossRef
37.
Vionnet O, Pinto YM, Baulcombe DC (1999) Supression of gene silencing: a general strategy used by diverse DNA and RNA viruses in plants. PNAS 96:14147–14152CrossRef
38.
Wittmann-Liebold B, Wittmann HG (1967) Coat proteins of strains of two RNA viruses: comparison of their amino acid sequences. Mol Gen Genetics 100:358–363CrossRef
39.
Young BA, Hein GL, French R, Stenger DC (2007) Substitution of conserved cysteine residues in wheat streak mosaic virus HC-Pro abolishes virus transmission by the wheat curl mite. Arch Virol 152:2107–2111PubMedCrossRef
40.
Young BA, Stenger DC, Qu F, Morris TJ, Tatineni S (2012) Tritimovirus P1 functions as a suppressor of RNA silencing and an enhancer of disease symptoms. Virus Res 163:672–677PubMedCrossRef
41.
Zheng T, Chen J, Chen JP, Adams MJ (2002) The complete sequence of Oat mosaic virus and evidence for deletion and duplication in RNA2. Arch Virol 147:635–642PubMedCrossRef
Metadata
Title
Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae
Authors
Dimitre Mollov
Ben Lockhart
David Zlesak
Publication date
01-09-2013
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 9/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1686-7

Other articles of this Issue 9/2013

Archives of Virology 9/2013 Go to the issue

Original Article

Identification and complete genome analysis of a virus variant or putative new foveavirus associated with apple green crinkle disease

Original Article

Simple and rapid detection of infectious myonecrosis virus using an immunochromatographic strip test

Brief Review

What contemporary viruses tell us about evolution: a personal view

Original Article

A two-tube multiplex real-time RT-PCR assay for the detection of four hemorrhagic fever viruses: severe fever with thrombocytopenia syndrome virus, Hantaan virus, Seoul virus, and dengue virus

Brief Report

Prevalence of porcine hokovirus and its co-infection with porcine circovirus 2 in China

Virology Division News

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013)
Obesity Clinical Trial Summary

At a glance: The STEP trials

Read more

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Pediatric Cardiology Video

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

Cardiopulmonary Comorbidity Video

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Valvular Heart Disease Video

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.

ACC 2024 Congress Coverage

Heart Failure Video

Year in Review: Heart failure and cardiomyopathies

Watch now

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

16-04-2024 Type 2 Diabetes News

Incentivised to exercise

11-04-2024 Lifestyle Modifications News

New intervention for STEMI-related cardiogenic shock

10-04-2024 Myocardial Infarction News

» View more highlights on the ACC 2024 congress hub page

Image Credits