Skip to main content
Key Specialties
Cardiology Diabetology Endocrinology Gastroenterology Geriatrics and Gerontology Gynecology and Obstetrics Hematology Infectious Disease Internal Medicine Nephrology Neurology Oncology Pediatrics Respiratory Medicine Rheumatology Surgery
Congress Coverage
2024 ACC Congress 2023 ESMO Congress 2023 EASD Congress 2023 ERS Congress 2023 ESC Congress
Clinical Collections
Advances in Alzheimer’s

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.
ADVANCED SEARCH
Log in
Top
Archives of Virology
Published in: Archives of Virology 10/2009

01-10-2009 | Brief Report

Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

Authors: Moon Nam, Sang Mok Kim, Leslie L. Domier, Serry Koh, Jung Kyung Moon, Hong Soo Choi, Hong Gi Kim, Jae Sun Moon, Su-Heon Lee

Published in: Archives of Virology | Issue 10/2009

Login to get access

Abstract

The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.
Literature
1.
2.
Boonham N, Henry CM, Wood KR (1998) The characterization of a subgenomic RNA and in vitro translation products of Oat chlorotic stunt virus. Virus Genes 16:141–145PubMedCrossRef
3.
Carrington JC, Heaton LA, Zuidema D, Hillman BI, Morris TJ (1989) The genome structure of Turnip crinkle virus. Virology 170:219–226PubMedCrossRef
4.
Ciuffreda P, Rubino L, Russo M (1998) Molecular cloning and complete nucleotide sequence of Galinsoga mosaic virus genomic RNA. Arch Virol 143:173–180PubMedCrossRef
5.
Cohen Y, Qu F, Gisel A, Morris TJ, Zambryski PC (2000) Nuclear localization of Turnip crinkle virus movement protein p8. Virology 273:276–285PubMedCrossRef
6.
Demski JW, Kuhn CW, Sinclair JB (1989) Virus diseases. In: Sinclair JB, Backman PA (eds) Compendium of soybean disease, 3rd edn. APS Press, St Paul, pp 50–51
7.
Diez J, Marcos JF, Pallas V (1998) Carmovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81. Plant virology protocols—from virus isolation to transgenic resistance. Humana Press, Totowa, pp 211–217
8.
Guilley H, Carrington JC, Balàzs E, Jonard G, Richards K, Morris TJ (1985) Nucleotide sequence and genome organization of Carnation mottle virus RNA. Nucleic Acids Res 13:6663–6677PubMedCrossRef
9.
Heame PQ, Knorr DA, Hillman BI, Morris TJ (1990) The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus. Virology 177:141–151CrossRef
10.
Huang M, Koh DCY, Weng LJ, Chang ML, Yap YK, Zhang L, Wong SM (2000) Complete nucleotide sequence and genome organization of Hibiscus chlorotic ringspot virus, a new member of the genus Carmovirus: evidence for the presence and expression of two novel open reading frames. J Virol 74:3149–3155PubMedCrossRef
11.
Navarro JA, Genoves A, Climent J, Sauri A, Martinez-Gil L, Mingarro I, Pallas V (2006) RNA-binding properties and membrane insertion of Melon necrotic spot virus (MNSV) double gene block movement proteins. Virology 356:57–67PubMedCrossRef
12.
Nutter RC, Scheets K, Panganiban LC, Lommel SA (1989) The complete nucleotide sequence of the Maize chlorotic mottle virus genome. Nucleic Acids Res 17:3163–3177PubMedCrossRef
13.
Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358PubMed
14.
Rico P, Hernandez C (2004) Complete nucleotide sequence and genome organization of Pelargonium flower break virus. Arch Virol 149:641–651PubMedCrossRef
15.
Riviere CJ, Rochon KM (1990) Nucleotide sequence and genomic organization of Melon necrotic spot virus. J Gen Virol 71:1887–1896PubMedCrossRef
16.
Rochon DM, Tremaine JH (1989) Complete nucleotide sequence of the Cucumber necrosis virus genome. Virology 169:251–259PubMedCrossRef
17.
Rubino L, Russo M (1997) Molecular analysis of the Pothos latent virus genome. J Gen Virol 78:1219–1226PubMed
18.
Ryabov EV, Generozov EV, Kendall TL, Lommel SA, Zavriev SK (1994) Nucleotide sequence of Carnation ringspot dianthovirus RNA-1. J Gen Virol 75:243–247PubMedCrossRef
19.
Skotnicki ML, Mackenzie AM, Torroen M, Gibbs AJ (1993) The genomic sequence of Cardamine chlorotic fleck carmovirus. J Gen Virol 74:1933–1937PubMedCrossRef
20.
Suzuki S, Hase S, Takahashi H, Ikegami M (2002) The genome organization of Pea stem necrosis virus and its assignment to the genus Carmovirus. Intervirology 45(3):160–163PubMedCrossRef
21.
Takemoto Y, Kanehira T, Shinohara M, Yamashita S, Hibi T (2000) The nucleotide sequence and genome organization of Japanese iris necrotic ring virus, a nep species in the genus Carmovirus. Arch Virol 145:651–657PubMedCrossRef
22.
Turina M, Maruoka M, Monis J, Jackson AO, Scholthof KG (1998) Nucleotide sequence and infectivity of a full-Length cDNA clone of Panicum mosaic virus. Virology 241:141–155PubMedCrossRef
23.
Wang J, Simon AE (1997) Analysis of the two subgenomic RNA promoters for Turnip crinkle virus in vivo and in vitro. Virology 232:174–186PubMedCrossRef
24.
Weng Z, Xiong Z (1997) Genome organization and gene expression of Saguaro cactus carmovirus. J Gen Virol 78:525–534PubMed
25.
White KA, Skuzeski JM, Li W, Wei N, Morris TJ (1982) Immunodetection, expression strategy and complementation of turnip crinkle virus p28 and p88 replication components. Virology 211:525–534CrossRef
26.
Xi D, Li J, Han C, Li D, Yu J, Zhou X (2008) Complete nucleotide sequence of a new strain of Tobacco necrosis virus A infecting soybean in China and infectivity of its full-length cDNA clone. Virus Genes 36:259–266PubMedCrossRef
27.
You XJ, Kim JW, Stuart GW, Bozarth RF (1995) The nucleotide sequence of Cowpea mottle virus and its assignment to the genus Carmovirus. J Gen Virol 76:2841–2845PubMedCrossRef
Metadata
Title
Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean
Authors
Moon Nam
Sang Mok Kim
Leslie L. Domier
Serry Koh
Jung Kyung Moon
Hong Soo Choi
Hong Gi Kim
Jae Sun Moon
Su-Heon Lee
Publication date
01-10-2009
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 10/2009
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0480-z

Other articles of this Issue 10/2009

Archives of Virology 10/2009 Go to the issue

Original Article

Molecular detection and prevalence of porcine caliciviruses in eastern China from 2008 to 2009

Annotated Sequence Record

A novel sugarcane-infecting mastrevirus from South Africa

Annotated Sequence Record

Insertion of large amino acid repeats and point mutations contribute to a high degree of sequence diversity in the X4 protein of tomato ringspot virus (genus Nepovirus)

Original Article

Genetic variation and pathogenicity of highly virulent porcine reproductive and respiratory syndrome virus emerging in China

Original Article

Polyomaviruses KI and WU in children with respiratory tract infection

Brief Report

Phylogenetic analysis of a near-full-length sequence of an erythrovirus genotype 3 strain isolated in Brazil
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Reserve your place

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

Read more

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Pediatric Cardiology Video

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

Cardiopulmonary Comorbidity Video

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Valvular Heart Disease Video

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

Watch now

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

16-04-2024 Type 2 Diabetes News

Incentivised to exercise

11-04-2024 Lifestyle Modifications News

New intervention for STEMI-related cardiogenic shock

10-04-2024 Myocardial Infarction News

» View more highlights on the ACC 2024 congress hub page

Image Credits