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Archives of Virology
Published in: Archives of Virology 3/2012

01-03-2012 | Annotated Sequence Record

Complete genome sequence of mandarin decline Citrus tristeza virus of the Northeastern Himalayan hill region of India: comparative analyses determine recombinant

Authors: Kajal K. Biswas, Avijit Tarafdar, Susheel K. Sharma

Published in: Archives of Virology | Issue 3/2012

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Abstract

The complete genome sequence of a mandarin (Citrus reticulata) decline CTV isolate, Kpg3, of the Darjeeling hills of the Northeastern Himalayan region of India is reported for the first time. The complete Kpg3 genome has 19253 nt, and its nucleotide sequence identity ranged from 79% with the Florida CTV isolate T36 to 94% with the Israel isolate VT, whereas its identity to B165, the other Indian isolate, was 89%. Phylogenetic analysis indicated that the Kpg3 genome is closely related to isolate VT and distantly to T36 and B165. Recombination analysis indicated that Kpg3 is recombinant and originated through multiple recombination events in which parts of the genome were exchanged between divergent CTV sequences.
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Metadata
Title
Complete genome sequence of mandarin decline Citrus tristeza virus of the Northeastern Himalayan hill region of India: comparative analyses determine recombinant
Authors
Kajal K. Biswas
Avijit Tarafdar
Susheel K. Sharma
Publication date
01-03-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1165-y

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