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Archives of Virology
Published in: Archives of Virology 3/2012

01-03-2012 | Brief Review

Genetic diversity in the 3′-terminal region of papaya ringspot virus (PRSV-W) isolates from watermelon in Oklahoma

Authors: Osama A. Abdalla, Akhtar Ali

Published in: Archives of Virology | Issue 3/2012

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Abstract

The 3′-terminal region (1191 nt) containing part of the NIb gene, complete coat protein (CP) and poly-A tail of 64 papaya ringspot virus (PRSV-W) isolates collected during 2008-2009 from watermelon in commercial fields of four different counties of Oklahoma were cloned and sequenced. Nucleotide and amino acid sequence identities ranged from 95.2-100% and 97.1-100%, respectively, among the Oklahoman PRSV-W isolates. Phylogenetic analysis showed that PRSW-W isolates clustered according to the locations where they were collected within Oklahoma, and each cluster contained two subgroups. All subgroups of Oklahoman PRSV-W isolates were on separate branches when compared to 35 known isolates originating from other parts of the world, including the one reported previously from the USA. This study helps in our understanding about the genetic diversity of PRSV-W isolates infecting cucurbits in Oklahoma.
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Metadata
Title
Genetic diversity in the 3′-terminal region of papaya ringspot virus (PRSV-W) isolates from watermelon in Oklahoma
Authors
Osama A. Abdalla
Akhtar Ali
Publication date
01-03-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1184-8

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