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01-09-2008 | Annotated Sequence Record

Molecular phylogenetic analysis of Barley yellow mosaic virus

Authors: H. Nishigawa, T. Hagiwara, M. Yumoto, T. Sotome, T. Kato, T. Natsuaki

Published in: Archives of Virology | Issue 9/2008

Abstract

Complete nucleotide sequences of three strains (I, III, and IV) of Barley yellow mosaic virus (BaYMV) isolated in Japan were determined. The length of the genome was the same among the three strains; RNA1 was 7,642 nt and RNA2 was 3,585 nt. The molecular phylogenetic analysis showed that strain I was most closely related to the Chinese isolate, and these two strains formed one cluster with European isolates. Strains II, III, and IV, and the Korean isolate formed another cluster. Amino acid sequences of each viral gene product were compared among strains. The sequences of the VPg protein showed less identity among almost strains (less than 92%) than the sequences of other proteins (more than 93%). VPg is thought to be involved in interactions with host factors, especially initiation factor 4E (eIF4E) or eIF(iso)4E, and infection. Therefore, the relationship between amino acid substitutions and infection of host plants is analyzed.

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Adams MJ (1991) The distribution of barley yellow mosaic virus (BaYMV) and barley mild mosaic virus (BaMMV) in UK winter barley samples, 1987–1990. Plant Pathol 40:53–58CrossRef

Chen J, Shi N, Cheng Y, Diao A, Chen J, Wilson TM, Antoniw JF, Adams MJ (1999) Molecular analysis of barley yellow mosaic virus isolates from China. Virus Res 64:13–21PubMedCrossRef

Chen J, Chen J, Adams MJ (2001) A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Arch Virol 146:757–766PubMedCrossRef

Davidson AD, Pröls M, Schell J, Steinbiss HH (1991) The nucleotide sequence of RNA2 of barley yellow mosaic virus. J Gen Virol 72:989–993PubMedCrossRef

Habekuss A, Kühne T, Krämer I, Rabenstein F, Ehrig F, Ruge-Wehling B, Huth W, Ordon F (2008) Identification of Barley mild mosaic virus isolates in Germany breaking rym5 resistance. J Phytopathol 156:36–41

Huth W (1989) Ein weiterer Stamm des Barley yellow mosaic virus (BaYMV) gefunden. Nachrichtenbl Deut Pflanzenschutzd 41:6–7

Inouye T, Saito Y (1975) Barley yellow mosaic virus. CMI/AAB Descriptions of Plant Viruses, No. 143

Kanyuka K, McGrann G, Alhudaib K, Hariri D, Adams MJ (2004) Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene. Arch Virol 149:1469–1480PubMedCrossRef

Kanyuka K, Druka A, Caldwell DG, Tymon A, Mccallum N, Waugh R, Adams MJ (2005) Evidence that the recessive bymovirus resistance locus rym4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Mol Plant Pathol 6:449–458CrossRef

10.

Kashiwazaki S, Ogawa K, Usugi T, Omura T, Tsuchizaki T (1989) Characterization of several strains of barley yellow mosaic virus. Ann Phytopath Soc Japan 55:16–25

11.

Kashiwazaki S, Minobe Y, Omura T, Hibino H (1990) Nucleotide sequence of barley yellow mosaic virus RNA1: a close evolutionary relationship with potyviruses. J Gen Virol 71:2781–2790PubMedCrossRef

12.

Kashiwazaki S, Minobe Y, Hibino H (1991) Nucleotide sequence of barley yellow mosaic virus RNA2. J Gen Virol 72:995–999PubMedCrossRef

13.

Kühne T, Shi N, Proeseler G, Adams MJ, Kanyuka K (2003) The ability of a bymovirus to overcome the rym4-mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1. J Gen Virol 84:2853–2859PubMedCrossRef

14.

Lee KJ, Choi MK, Lee WH, Rajkumar M (2006) Molecular analysis of Korean isolate of barley yellow mosaic virus. Virus Genes 32:171–176PubMedCrossRef

15.

Léonard S, Plante D, Wittmann S, Daigneault N, Fortin MG, Laliberté JF (2000) Complex formation between potyvirus VPg and translation eukaryotic initiation factor 4E correlates with virus infectivity. J Virol 74:7730–7737PubMedCrossRef

16.

Murphy JF, Rychlik W, Rhoads RE, Hunt AG, Shaw JG (1991) A tyrosine residue in the small nuclear inclusion protein of tobacco vein mottling virus links the VPg to the viral RNA. J Virol 65:511–513PubMed

17.

Okada Y, Kato T, Yoshida M, Saito A (2008) Identification of Japanese strains of Barley yellow mosaic virus by RT-PCR/RFLP analysis of the coat protein-coding region. J Gen Plant Pathol 74:258–263

18.

Peerenboom E, Pröls M, Schell J, Steinbiss HH, Davidson AD (1992) The complete nucleotide sequence of RNA1 of a German isolate of barley yellow mosaic virus and its comparison with a Japanese isolate. J Gen Virol 73:1303–1308PubMedCrossRef

19.

Robaglia C, Caranta C (2006) Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci 11:40–45PubMedCrossRef

20.

Roudet-Tavert G, Michon T, Walter J, Delaunay T, Redondo E, Le Gall O (2007) Central domain of a potyvirus VPg is involved in the interaction with the host translation initiation factor eIF4E and the viral protein HcPro. J Gen Virol 88:1029–1033PubMedCrossRef

21.

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed

22.

Stein N, Perovic D, Kumlehn J, Pellio B, Stracke S, Streng S, Ordon F, Graner A (2005) The eukaryotic translation initiation factor 4E confers multiallelic recessive Bymovirus resistance in Hordeum vulgare (L.). Plant J 42:912–922PubMedCrossRef

23.

Steyer S, Kummert J, Froidmont F (1995) Characterization of a resistance-breaking BaYMV isolate from Belgium. Agronomie 15:433–438CrossRef

24.

Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef

25.

Yoshii M, Nishikiori M, Tomita K, Yoshioka N, Kozuka R, Naito S, Ishikawa M (2004) The Arabidopsis cucumovirus multiplication 1 and 2 loci encode translation initiation factors 4E and 4G. J Virol 78:6102–6111PubMedCrossRef

Title: Molecular phylogenetic analysis of Barley yellow mosaic virus
Authors: H. Nishigawa
T. Hagiwara
M. Yumoto
T. Sotome
T. Kato
T. Natsuaki
Publication date: 01-09-2008
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 9/2008
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-008-0163-1

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