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Published in: Archives of Virology 9/2018

01-09-2018 | Brief Report

Development of a TaqMan MGB RT-PCR assay for the detection of type A and subtype H10 avian influenza viruses

Authors: Fan Yang, Bin Chen, Fumin Liu, Xiuming Peng, Tao Sun, Hangping Yao, Haibo Wu, Nanping Wu

Published in: Archives of Virology | Issue 9/2018

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Abstract

H10 subtype avian influenza viruses have caused several epidemics in poultry and mammals, and specific, rapid and sensitive methods for detection are urgently needed. Herein, TaqMan minor groove binder (MGB) probes and multiplex real-time RT-PCR primers were designed based on gene regions encoding conserved domains of the nucleoprotein and H10 hemagglutinin. The developed multiplex real-time RT-PCR assay displayed high specificity, repeatability, and a detection limit of 10 copies per reaction. This diagnostic method could prove valuable for the rapid detection of H10 subtype AIVs in China.
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Literature
1.
go back to reference Englund L, Segerstad CH (1998) Two avian H10 influenza A virus strains with different pathogenicity for mink (Mustela vison). Arch Virol 143(4):653–666CrossRefPubMed Englund L, Segerstad CH (1998) Two avian H10 influenza A virus strains with different pathogenicity for mink (Mustela vison). Arch Virol 143(4):653–666CrossRefPubMed
2.
go back to reference Ma C, Lam TTY, Chai YJ, Wang J, Fan XH, Hong WS, Zhang Y, Li LF, Liu YM, Smith DK, Webby RJ, Peiris JSM, Zhu HC, Guan Y (2015) Emergence and evolution of H10 subtype Influenza viruses in poultry in China. J Virol 89(7):3534–3541CrossRefPubMedPubMedCentral Ma C, Lam TTY, Chai YJ, Wang J, Fan XH, Hong WS, Zhang Y, Li LF, Liu YM, Smith DK, Webby RJ, Peiris JSM, Zhu HC, Guan Y (2015) Emergence and evolution of H10 subtype Influenza viruses in poultry in China. J Virol 89(7):3534–3541CrossRefPubMedPubMedCentral
3.
go back to reference Su C, Chen S, Liu X, Xu J, Huang K, Liu K, Huang J, Peng D, Liu X (2013) Genome sequence of a Novel H10N9 Avian Influenza Virus Isolated from Chickens in a live poultry market in Eastern China. Genome Announc 1(4):e00386-13CrossRefPubMedPubMedCentral Su C, Chen S, Liu X, Xu J, Huang K, Liu K, Huang J, Peng D, Liu X (2013) Genome sequence of a Novel H10N9 Avian Influenza Virus Isolated from Chickens in a live poultry market in Eastern China. Genome Announc 1(4):e00386-13CrossRefPubMedPubMedCentral
4.
go back to reference Zhang MM, Zhang XX, Xu KD, Teng QY, Liu QF, Li XS, Yang JM, Xu JQ, Chen HJ, Zhang XY, Li ZJ (2017) Characterization of the pathogenesis of H10N3, H10N7, and H10N8 subtype Avian Influenza viruses circulating in ducks. Sci Rep 6:34489CrossRef Zhang MM, Zhang XX, Xu KD, Teng QY, Liu QF, Li XS, Yang JM, Xu JQ, Chen HJ, Zhang XY, Li ZJ (2017) Characterization of the pathogenesis of H10N3, H10N7, and H10N8 subtype Avian Influenza viruses circulating in ducks. Sci Rep 6:34489CrossRef
5.
go back to reference Jia YN, Yang JY, Wang ZX, Du YY, Cui J, Wang L, Guo FF, Yang MJ, Han SF, Zhu QY (2017) Genetic properties and pathogenicity of a novel reassortant H10N5 influenza virus from wild birds. Arch Virol 162(5):1349–1353CrossRefPubMed Jia YN, Yang JY, Wang ZX, Du YY, Cui J, Wang L, Guo FF, Yang MJ, Han SF, Zhu QY (2017) Genetic properties and pathogenicity of a novel reassortant H10N5 influenza virus from wild birds. Arch Virol 162(5):1349–1353CrossRefPubMed
6.
go back to reference Englund L (2000) Studies on influenza viruses H10N4 and H10N7 of avian origin in mink. Vet Microbiol 74(1–2):101–107CrossRefPubMed Englund L (2000) Studies on influenza viruses H10N4 and H10N7 of avian origin in mink. Vet Microbiol 74(1–2):101–107CrossRefPubMed
7.
go back to reference Wang N, Zou W, Yang Y, Guo XB, Hua YF, Zhang Q, Zhao ZZ, Jin ML (2012) Complete genome sequence of an H10N5 Avian Influenza virus isolated from Pigs in Central China. J Virol 86(24):13865–13866CrossRefPubMedPubMedCentral Wang N, Zou W, Yang Y, Guo XB, Hua YF, Zhang Q, Zhao ZZ, Jin ML (2012) Complete genome sequence of an H10N5 Avian Influenza virus isolated from Pigs in Central China. J Virol 86(24):13865–13866CrossRefPubMedPubMedCentral
8.
go back to reference van den Brand JMA, Wohlsein P, Herfst S, Bodewes R, Pfankuche VM, van de Bildt MWG, Seehusen F, Puff C, Richard M, Siebert U, Lehnert K, Bestebroer T, Lexmond P, Fouchier RAM, Prenger-Berninghoff E, Herbst W, Koopmans M, Osterhaus ADME, Kuiken T, Baumgartner W (2016) Influenza A (H10N7) virus causes respiratory tract disease in Harbor Seals and Ferrets. PLoS One 11(7):e0159625CrossRefPubMedPubMedCentral van den Brand JMA, Wohlsein P, Herfst S, Bodewes R, Pfankuche VM, van de Bildt MWG, Seehusen F, Puff C, Richard M, Siebert U, Lehnert K, Bestebroer T, Lexmond P, Fouchier RAM, Prenger-Berninghoff E, Herbst W, Koopmans M, Osterhaus ADME, Kuiken T, Baumgartner W (2016) Influenza A (H10N7) virus causes respiratory tract disease in Harbor Seals and Ferrets. PLoS One 11(7):e0159625CrossRefPubMedPubMedCentral
9.
go back to reference Arzey GG, Kirkland PD, Arzey KE, Frost M, Maywood P, Conaty S, Hurt AC, Deng YM, Iannello P, Barr I, Dwyer DE, Ratnamohan M, McPhie K, Selleck P (2012) Influenza Virus A (H10N7) in Chickens and Poultry Abattoir Workers, Australia. Emerg Infect Dis 18(5):814–816CrossRefPubMedPubMedCentral Arzey GG, Kirkland PD, Arzey KE, Frost M, Maywood P, Conaty S, Hurt AC, Deng YM, Iannello P, Barr I, Dwyer DE, Ratnamohan M, McPhie K, Selleck P (2012) Influenza Virus A (H10N7) in Chickens and Poultry Abattoir Workers, Australia. Emerg Infect Dis 18(5):814–816CrossRefPubMedPubMedCentral
10.
go back to reference Chen H, Yuan H, Gao R, Zhang J, Wang D, Xiong Y, Fan G, Yang F, Li X, Zhou J, Zou S, Yang L, Chen T, Dong L, Bo H, Zhao X, Zhang Y, Lan Y, Bai T, Dong J, Li Q, Wang S, Zhang Y, Li H, Gong T, Shi Y, Ni X, Li J, Zhou J, Fan J, Wu J, Zhou X, Hu M, Wan J, Yang W, Li D, Wu G, Feng Z, Gao GF, Wang Y, Jin Q, Liu M, Shu Y (2014) Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study. Lancet 383(9918):714–721CrossRefPubMed Chen H, Yuan H, Gao R, Zhang J, Wang D, Xiong Y, Fan G, Yang F, Li X, Zhou J, Zou S, Yang L, Chen T, Dong L, Bo H, Zhao X, Zhang Y, Lan Y, Bai T, Dong J, Li Q, Wang S, Zhang Y, Li H, Gong T, Shi Y, Ni X, Li J, Zhou J, Fan J, Wu J, Zhou X, Hu M, Wan J, Yang W, Li D, Wu G, Feng Z, Gao GF, Wang Y, Jin Q, Liu M, Shu Y (2014) Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study. Lancet 383(9918):714–721CrossRefPubMed
11.
go back to reference Sutton TC, Lamirande EW, Czako R, Subbarao K (2017) Evaluation of the biological properties and cross-reactive antibody response to H10 Influenza viruses in Ferrets. J Virol 91(19):e00895-17CrossRefPubMedCentral Sutton TC, Lamirande EW, Czako R, Subbarao K (2017) Evaluation of the biological properties and cross-reactive antibody response to H10 Influenza viruses in Ferrets. J Virol 91(19):e00895-17CrossRefPubMedCentral
12.
go back to reference Wu HB, Peng XM, Peng XR, Cheng LF, Jin CZ, Lu XY, Xie TS, Yao HP, Wu NP (2016) Multiple amino acid substitutions involved in the adaptation of avian-origin influenza A (H10N7) virus in mice. Arch Virol 161(4):977–980CrossRefPubMed Wu HB, Peng XM, Peng XR, Cheng LF, Jin CZ, Lu XY, Xie TS, Yao HP, Wu NP (2016) Multiple amino acid substitutions involved in the adaptation of avian-origin influenza A (H10N7) virus in mice. Arch Virol 161(4):977–980CrossRefPubMed
13.
go back to reference Vemula SV, Zhao JQ, Liu JK, Wang X, Biswas S, Hewlett I (2016) Current approaches for diagnosis of influenza virus infections in humans. Viruses-Basel 8(4):96CrossRef Vemula SV, Zhao JQ, Liu JK, Wang X, Biswas S, Hewlett I (2016) Current approaches for diagnosis of influenza virus infections in humans. Viruses-Basel 8(4):96CrossRef
14.
go back to reference Wu HB, Lu RF, Peng XM, Liu FM, Cheng LF, Wu NP (2017) Characterization of reassortant H1-subtype avian influenza viruses isolated from poultry in Zhejiang Province in China from 2013 to 2015. Arch Virol 162(11):3493–3500CrossRefPubMed Wu HB, Lu RF, Peng XM, Liu FM, Cheng LF, Wu NP (2017) Characterization of reassortant H1-subtype avian influenza viruses isolated from poultry in Zhejiang Province in China from 2013 to 2015. Arch Virol 162(11):3493–3500CrossRefPubMed
15.
go back to reference Wu HB, Lu RF, Peng XM, Peng XR, Cheng LF, Liu FM, Wu NP (2017) Characterization of novel reassortant Influenza A (H5N2) viruses isolated from poultry in Eastern China, 2015. Front Microbiol 8:741CrossRefPubMedPubMedCentral Wu HB, Lu RF, Peng XM, Peng XR, Cheng LF, Liu FM, Wu NP (2017) Characterization of novel reassortant Influenza A (H5N2) viruses isolated from poultry in Eastern China, 2015. Front Microbiol 8:741CrossRefPubMedPubMedCentral
16.
go back to reference Wu HB, Peng XM, Peng XR, Cheng LF, Lu XY, Jin CZ, Xie TS, Yao HP, Wu NP (2015) Genetic and molecular characterization of H9N2 and H5 avian influenza viruses from live poultry markets in Zhejiang Province, eastern China. Sci Rep 5:17508CrossRefPubMedPubMedCentral Wu HB, Peng XM, Peng XR, Cheng LF, Lu XY, Jin CZ, Xie TS, Yao HP, Wu NP (2015) Genetic and molecular characterization of H9N2 and H5 avian influenza viruses from live poultry markets in Zhejiang Province, eastern China. Sci Rep 5:17508CrossRefPubMedPubMedCentral
17.
go back to reference Wu HB, Guo CT, Lu RF, Xu LH, Wo EK, You JB, Wang YT, Wang QG, Wu NP (2012) Characterization of a highly pathogenic H5N1 avian influenza virus isolated from ducks in Eastern China in 2011. Arch Virol 157(6):1131–1136CrossRef Wu HB, Guo CT, Lu RF, Xu LH, Wo EK, You JB, Wang YT, Wang QG, Wu NP (2012) Characterization of a highly pathogenic H5N1 avian influenza virus isolated from ducks in Eastern China in 2011. Arch Virol 157(6):1131–1136CrossRef
18.
go back to reference Yang F, Wu H, Liu F, Lu X, Peng X, Wu N (2018) Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses. Arch Virol 163(6):1671–1675CrossRefPubMed Yang F, Wu H, Liu F, Lu X, Peng X, Wu N (2018) Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses. Arch Virol 163(6):1671–1675CrossRefPubMed
19.
go back to reference Zhang Y, Mao H, Yan J, Wang X, Zhang L, Guus K, Li H, Li Z, Chen Y, Gong L, Chen Z, Xia S (2014) Development of novel AllGlo-probe-based one-step multiplex qRT-PCR assay for rapid identification of avian influenza virus H7N9. Arch Virol 159(7):1707–1713CrossRefPubMed Zhang Y, Mao H, Yan J, Wang X, Zhang L, Guus K, Li H, Li Z, Chen Y, Gong L, Chen Z, Xia S (2014) Development of novel AllGlo-probe-based one-step multiplex qRT-PCR assay for rapid identification of avian influenza virus H7N9. Arch Virol 159(7):1707–1713CrossRefPubMed
20.
go back to reference Sidoti F, Rizzo F, Costa C, Astegiano S, Curtoni A, Mandola ML, Cavallo R, Bergallo M (2010) Development of real time RT-PCR assays for detection of type A influenza virus and for subtyping of avian H5 and H7 hemagglutinin subtypes. Mol Biotechnol 44(1):41–50CrossRefPubMed Sidoti F, Rizzo F, Costa C, Astegiano S, Curtoni A, Mandola ML, Cavallo R, Bergallo M (2010) Development of real time RT-PCR assays for detection of type A influenza virus and for subtyping of avian H5 and H7 hemagglutinin subtypes. Mol Biotechnol 44(1):41–50CrossRefPubMed
21.
go back to reference Zhang Z, Liu D, Sun W, Liu J, He L, Hu J, Gu M, Wang X, Liu X, Hu S, Chen S, Peng D, Liu X (2017) Multiplex one-step real-time PCR by Taqman-MGB method for rapid detection of pan and H5 subtype avian influenza viruses. PLoS One 12(6):e0178634CrossRefPubMedPubMedCentral Zhang Z, Liu D, Sun W, Liu J, He L, Hu J, Gu M, Wang X, Liu X, Hu S, Chen S, Peng D, Liu X (2017) Multiplex one-step real-time PCR by Taqman-MGB method for rapid detection of pan and H5 subtype avian influenza viruses. PLoS One 12(6):e0178634CrossRefPubMedPubMedCentral
22.
go back to reference Wu H, Lu R, Wu X, Peng X, Xu L, Cheng L, Lu X, Jin C, Xie T, Yao H, Wu N (2015) Isolation and characterization of a novel H10N2 avian influenza virus from a domestic duck in Eastern China. Infect Genet Evol 29:1–5CrossRefPubMed Wu H, Lu R, Wu X, Peng X, Xu L, Cheng L, Lu X, Jin C, Xie T, Yao H, Wu N (2015) Isolation and characterization of a novel H10N2 avian influenza virus from a domestic duck in Eastern China. Infect Genet Evol 29:1–5CrossRefPubMed
23.
go back to reference Krog JS, Hansen MS, Holm E, Hjulsager CK, Chriel M, Pedersen K, Andresen LO, Abildstrom M, Jensen TH, Larsen LE (2015) Influenza A(H10N7) virus in dead harbor seals, Denmark. Emerg Infect Dis 21(4):684–687CrossRefPubMedPubMedCentral Krog JS, Hansen MS, Holm E, Hjulsager CK, Chriel M, Pedersen K, Andresen LO, Abildstrom M, Jensen TH, Larsen LE (2015) Influenza A(H10N7) virus in dead harbor seals, Denmark. Emerg Infect Dis 21(4):684–687CrossRefPubMedPubMedCentral
24.
go back to reference Luo SS, Xie ZX, Xie LJ, Liu JB, Xie ZQ, Deng XW, Huang L, Huang JL, Zeng TT, Khan MI (2015) Reverse-transcription, loop-mediated isothermal amplification assay for the sensitive and rapid detection of H10 subtype avian influenza viruses. Virol J 12:145CrossRefPubMedPubMedCentral Luo SS, Xie ZX, Xie LJ, Liu JB, Xie ZQ, Deng XW, Huang L, Huang JL, Zeng TT, Khan MI (2015) Reverse-transcription, loop-mediated isothermal amplification assay for the sensitive and rapid detection of H10 subtype avian influenza viruses. Virol J 12:145CrossRefPubMedPubMedCentral
25.
go back to reference Sun H, Xue JL, Bailey E, Xu Y, Hu G, Baroch J, Zhang Y, Pace L, DeLiberto TJ, Wan XF (2016) A quantitative RT-PCR assay for rapid detection of Eurasian-lineage H10 subtype influenza a virus. Virol Sin 31(5):444–447CrossRefPubMedPubMedCentral Sun H, Xue JL, Bailey E, Xu Y, Hu G, Baroch J, Zhang Y, Pace L, DeLiberto TJ, Wan XF (2016) A quantitative RT-PCR assay for rapid detection of Eurasian-lineage H10 subtype influenza a virus. Virol Sin 31(5):444–447CrossRefPubMedPubMedCentral
Metadata
Title
Development of a TaqMan MGB RT-PCR assay for the detection of type A and subtype H10 avian influenza viruses
Authors
Fan Yang
Bin Chen
Fumin Liu
Xiuming Peng
Tao Sun
Hangping Yao
Haibo Wu
Nanping Wu
Publication date
01-09-2018
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 9/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-3889-4

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