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Archives of Virology
Published in: Archives of Virology 4/2016

01-04-2016 | Annotated Sequence Record

The first complete genome sequence of iris severe mosaic virus

Authors: Yongqiang Li, Congliang Deng, Qiaoxia Shang, Xiaoli Zhao, Xingliang Liu, Qi Zhou

Published in: Archives of Virology | Issue 4/2016

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Abstract

The first complete genome sequence of ISMV was determined by deep sequencing of a small RNA library constructed from ISMV-infected samples and rapid amplification of cDNA ends (RACE) PCR. The ISMV genome consists of 10,403 nucleotides excluding the poly(A) tail and contains a large open reading frame encoding a polyprotein of 3316 amino acids. Putative proteolytic cleavage sites were identified by BLAST analysis. The ISMV polyprotein showed highest amino acid sequence identity to that encoded by onion yellow dwarf virus. Phylogenetic analysis of the polyprotein amino acid sequence confirmed that ISMV forms a cluster with shallot yellow stripe virus, Cyrtanthus elatus virus A, narcissus degeneration virus and onion yellow dwarf virus. These results confirm that ISMV is a distinct member of the genus Potyvirus.
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Literature
1.
Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487CrossRefPubMed
2.
Alper M, Salomon R, Loebenstein G (1984) Gel electrophoresis of virus-associated polypeptides for detecting viruses in bulbous irises. Phytopathology 74:960–962CrossRef
3.
Asjes CJ (1979) Viruses and virus diseases in Dutch bulbous irises (Iris hollandica) in the Netherlands. Neth J Plant Pathol 85:269–279CrossRef
4.
Atreya CD, Raccah B, Pirone TP (1990) A point mutation in the coat protein abolishes aphid transmissibility of a potyvirus. Virology 178:161–165CrossRefPubMed
5.
Atreya PL, Lopez-Moya JJ, Chu MH, Atreya CD, Pirone TP (1995) Mutational analysis of the coat protein N-terminal amino-acids involved in potyvirus transmission by aphids. J Gen Virol 76:265–270CrossRefPubMed
6.
Brierley P, McWhorter FP (1936) A mosaic disease of iris. J Agric Res 53:621–635
7.
Brunt AA, Phillips S (1980) The detection, separation from naturally occurring complexes, and partial characterisation of four aphid-borne viruses infecting bulbous iris. ISHS Acta Hortic 109:503–508CrossRef
8.
9.
Derks AFLM (1985) Recent advances in bulb virus research. Acta Hortic 164:281–289CrossRef
10.
Derks AFLM, Hollinger TC (1986) Similarities of and differences between potyviruses from bulbous and rhizomatous irises. ISHS Acta Hortic 177:555–561CrossRef
11.
Derks AFLM, Vink-van den Abeele JL, Muller PJ (1980) Bean yellow mosaic virus in some iridaceous plants. ISHS Acta Hortic 110:31–37CrossRef
12.
Hammond J, Derks AFLM, Barnett OW, Lawson RH, Brunt AA, Inouye N, Allen TC (1985) Viruses infecting bulbous iris: a clarification of nomenclature. ISHS Acta Hortic 164:395–397CrossRef
13.
Inouye N, Mitsuhata K (1978) Turnip mosaic virus isolated from Iris. Nogaku Kenkyu 57:1–16 (in Japanese)
14.
Kulshrestha S, Hallan V, Raikhy G, Kumar A, Ram R, Garg ID, Zaidi AA (2004) Molecular characterization of an Iris severe mosaic virus isolate from India. Acta Virol 48:65–67PubMed
15.
Lucinda N, Rocha WB, Inoue-Nagata AK, Nagata T (2012) Complete genome sequence of pepper yellow mosaic virus, a potyvirus, occurring in Brazil. Arch Virol 157:1397–1401CrossRefPubMed
16.
Nateqi M, Habibi MK, Dizadji A, Parizad S (2015) Detection and molecular characterization of the Iris severe mosaic virus-Ir isolate from Iran. J Plant Prot Res. doi:10.​1515/​jppr-2015-0032
17.
Park WM, Lee SS, Park SH, Ryu KH (2000) Sequence analysis of the coat protein gene of a Korean isolate of Iris severe mosaic potyvirus from Iris plant. Plant Pathol J16:36–42
18.
Revers F, Le Gall O, Candresse T, Maule AJ (1999) New advances in understanding the molecular biology of plant/potyvirus interactions. Mol Plant Microbe Interact 12:367–376CrossRef
19.
20.
Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175CrossRefPubMed
21.
Van der Vlugt CIM (1994) Distribution and multiplication of Iris severe mosaic potyvirus in bulbous Iris in relation to metabolic activity: implications for ISMV detection, Ph.D. thesis. Bulb Research Centre Lisse, Dutch Flower bulb Industry, The Netherlands
22.
Van der Vlugt CIM, Langeveld SA, Goldbach RW (1994) Molecular cloning and sequence analysis of the 3’-terminal region of iris severe mosaic virus RNA. Arch Virol 136:397–406CrossRefPubMed
23.
Wu QF, Wang Y, Cao MJ, Pantaleo V, Burgyan J, Li WX, Ding SW (2012) Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm. Proc Natl Acad Sci USA 109:3938–3943CrossRefPubMedPubMedCentral
24.
Yan SJ, Qin ZD, Jin LL, Chen JS (2010) A new isolate of Iris severe mosaic virus causing yellow mosaic in Iris ensata Thunb. J Nanosci Nanotechnol 10:726–730CrossRefPubMed
25.
Metadata
Title
The first complete genome sequence of iris severe mosaic virus
Authors
Yongqiang Li
Congliang Deng
Qiaoxia Shang
Xiaoli Zhao
Xingliang Liu
Qi Zhou
Publication date
01-04-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 4/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2743-1

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