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Published in: Clinical Reviews in Allergy & Immunology 2/2018

01-04-2018

Review: Diagnosing Common Variable Immunodeficiency Disorder in the Era of Genome Sequencing

Authors: Rohan Ameratunga, Klaus Lehnert, See-Tarn Woon, David Gillis, Vanessa L. Bryant, Charlotte A. Slade, Richard Steele

Published in: Clinical Reviews in Allergy & Immunology | Issue 2/2018

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Abstract

Common variable immunodeficiency disorders (CVID) are an enigmatic group of often heritable conditions, which may manifest for the first time in early childhood or as late as the eighth decade of life. In the last 5 years, next generation sequencing (NGS) has revolutionised identification of genetic disorders. However, despite the best efforts of researchers around the globe, CVID conditions have been slow to yield their molecular secrets. We have previously described the many clinical advantages of identifying the genetic basis of primary immunodeficiency disorders (PIDs). In a minority of CVID patients, monogenic defects have now been identified. If a causative mutation is identified, these conditions are reclassified as CVID-like disorders. Here we discuss recent advances in the genetics of CVID and discuss how NGS can be optimally deployed to identify the causal mutations responsible for the protean clinical manifestations of these conditions. Diagnostic criteria such as the Ameratunga et al. criteria will continue to play an important role in patient management as well as case selection and sequencing strategy design until the genetic conundrum of CVID is solved.
Literature
1.
go back to reference Gathmann B, Mahlaoui N, Gerard L et al (2014) Clinical picture and treatment of 2212 patients with common variable immunodeficiency. J Allergy Clin Immunol 134(1):116–126CrossRefPubMed Gathmann B, Mahlaoui N, Gerard L et al (2014) Clinical picture and treatment of 2212 patients with common variable immunodeficiency. J Allergy Clin Immunol 134(1):116–126CrossRefPubMed
2.
go back to reference Chapel H, Lucas M, Lee M et al (2008) Common variable immunodeficiency disorders: division into distinct clinical phenotypes. Blood 112(2):277–286CrossRefPubMed Chapel H, Lucas M, Lee M et al (2008) Common variable immunodeficiency disorders: division into distinct clinical phenotypes. Blood 112(2):277–286CrossRefPubMed
3.
go back to reference Ameratunga R, Becroft DM, Hunter W (2000) The simultaneous presentation of sarcoidosis and common variable immune deficiency. Pathology 32(4):280–282CrossRefPubMed Ameratunga R, Becroft DM, Hunter W (2000) The simultaneous presentation of sarcoidosis and common variable immune deficiency. Pathology 32(4):280–282CrossRefPubMed
4.
go back to reference Ameratunga R, Woon ST, Gillis D, Koopmans W, Steele R (2013) New diagnostic criteria for common variable immune deficiency (CVID), which may assist with decisions to treat with intravenous or subcutaneous immunoglobulin. Clin Exp Immunol 174(2):203–211PubMedPubMedCentral Ameratunga R, Woon ST, Gillis D, Koopmans W, Steele R (2013) New diagnostic criteria for common variable immune deficiency (CVID), which may assist with decisions to treat with intravenous or subcutaneous immunoglobulin. Clin Exp Immunol 174(2):203–211PubMedPubMedCentral
5.
go back to reference Ameratunga R, Woon ST, Gillis D, Koopmans W, Steele R (2014) New diagnostic criteria for CVID. Expert Rev Clin Immunol 10(2):183–186CrossRefPubMed Ameratunga R, Woon ST, Gillis D, Koopmans W, Steele R (2014) New diagnostic criteria for CVID. Expert Rev Clin Immunol 10(2):183–186CrossRefPubMed
6.
go back to reference Koopmans W, Woon ST, Zeng IS et al (2013) Variability of memory B cell markers in a cohort of common variable immune deficiency patients over six months. Scand J Immunol 77(6):470–475CrossRefPubMed Koopmans W, Woon ST, Zeng IS et al (2013) Variability of memory B cell markers in a cohort of common variable immune deficiency patients over six months. Scand J Immunol 77(6):470–475CrossRefPubMed
7.
go back to reference Ameratunga R, Barker R, Steele R et al (2015) Profound reversible hypogammaglobulinemia caused by celiac disease in the absence of protein losing enteropathy. J Clin Immunol 35(6):589–594CrossRefPubMed Ameratunga R, Barker R, Steele R et al (2015) Profound reversible hypogammaglobulinemia caused by celiac disease in the absence of protein losing enteropathy. J Clin Immunol 35(6):589–594CrossRefPubMed
8.
go back to reference Ameratunga R, Lindsay K, Woon S-T, Jordan A, Anderson NE, Koopmans W (2015) New diagnostic criteria could distinguish common variable immunodeficiency disorder from anticonvulsant-induced hypogammaglobulinemia. Clin Exp Neuroimmunol 6(1):83–88CrossRef Ameratunga R, Lindsay K, Woon S-T, Jordan A, Anderson NE, Koopmans W (2015) New diagnostic criteria could distinguish common variable immunodeficiency disorder from anticonvulsant-induced hypogammaglobulinemia. Clin Exp Neuroimmunol 6(1):83–88CrossRef
9.
go back to reference Ameratunga R, Storey P, Barker R, Jordan A, Koopmans W, Woon ST (2015) Application of diagnostic and treatment criteria for common variable immunodeficiency disorder. Expert Rev Clin Immunol 12(3):257–266CrossRef Ameratunga R, Storey P, Barker R, Jordan A, Koopmans W, Woon ST (2015) Application of diagnostic and treatment criteria for common variable immunodeficiency disorder. Expert Rev Clin Immunol 12(3):257–266CrossRef
10.
go back to reference Ameratunga RV, Parry S, Kenedi C (2013) Hypogammaglobulinemia factitia- Munchausen syndrome presenting as common variable immune deficiency. Allergy Asthma Clin Immunol. 9(36) Ameratunga RV, Parry S, Kenedi C (2013) Hypogammaglobulinemia factitia- Munchausen syndrome presenting as common variable immune deficiency. Allergy Asthma Clin Immunol. 9(36)
11.
12.
go back to reference Bonilla FA, Barlan I, Chapel H et al (2016) International Consensus Document (ICON): common variable immunodeficiency disorders. J Allergy Clin Immunol Pract 4(1):38–59CrossRefPubMed Bonilla FA, Barlan I, Chapel H et al (2016) International Consensus Document (ICON): common variable immunodeficiency disorders. J Allergy Clin Immunol Pract 4(1):38–59CrossRefPubMed
13.
go back to reference Oksenhendler E, Gerard L, Fieschi C et al (2008) Infections in 252 patients with common variable immunodeficiency. Clin Infect Dis 46(10):1547–1554CrossRefPubMed Oksenhendler E, Gerard L, Fieschi C et al (2008) Infections in 252 patients with common variable immunodeficiency. Clin Infect Dis 46(10):1547–1554CrossRefPubMed
14.
go back to reference Conley ME, Notarangelo LD, Etzioni A (1999) Diagnostic criteria for primary immunodeficiencies. Representing PAGID (Pan-American Group for Immunodeficiency) and ESID (European Society for Immunodeficiencies). Clin Immunol 93(3):190–197CrossRefPubMed Conley ME, Notarangelo LD, Etzioni A (1999) Diagnostic criteria for primary immunodeficiencies. Representing PAGID (Pan-American Group for Immunodeficiency) and ESID (European Society for Immunodeficiencies). Clin Immunol 93(3):190–197CrossRefPubMed
15.
go back to reference Empson M, Sinclair J, O'Donnell J, Ameratunga R, Fitzharris P, Steele R (2004) The assessment and management of primary antibody deficiency. N Z Med J 117(1195):U914PubMed Empson M, Sinclair J, O'Donnell J, Ameratunga R, Fitzharris P, Steele R (2004) The assessment and management of primary antibody deficiency. N Z Med J 117(1195):U914PubMed
16.
go back to reference Ameratunga R, Gillis D, Steele R (2016) Diagnostic criteria for common variable immunodeficiency disorders. J Allergy Clin Immunol Pract 4(5):1017–1018CrossRefPubMed Ameratunga R, Gillis D, Steele R (2016) Diagnostic criteria for common variable immunodeficiency disorders. J Allergy Clin Immunol Pract 4(5):1017–1018CrossRefPubMed
17.
go back to reference Richards S, Aziz N, Bale S et al (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med: Off J Am Coll Med Genet 17(5):405–424CrossRef Richards S, Aziz N, Bale S et al (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med: Off J Am Coll Med Genet 17(5):405–424CrossRef
18.
go back to reference Woon ST, Ameratunga R. Comprehensive genetic testing for primary immunodeficiency disorders in a tertiary hospital: 10-year experience in Auckland, New Zealand. Allergy Asthma Clin Immunol 2016;12:65 Woon ST, Ameratunga R. Comprehensive genetic testing for primary immunodeficiency disorders in a tertiary hospital: 10-year experience in Auckland, New Zealand. Allergy Asthma Clin Immunol 2016;12:65
19.
go back to reference Ameratunga R, Winkelstein JA, Brody L et al (1998) Molecular analysis of the third component of canine complement (C3) and identification of the mutation responsible for hereditary canine C3 deficiency. J Immunol 160(6):2824–2830PubMed Ameratunga R, Winkelstein JA, Brody L et al (1998) Molecular analysis of the third component of canine complement (C3) and identification of the mutation responsible for hereditary canine C3 deficiency. J Immunol 160(6):2824–2830PubMed
20.
go back to reference Bacchelli C, Buckland KF, Buckridge S et al (2011) The C76R transmembrane activator and calcium modulator cyclophilin ligand interactor mutation disrupts antibody production and B-cell homeostasis in heterozygous and homozygous mice. J Allergy Clin Immunol 127(5):1253–1259 e1213 CrossRefPubMed Bacchelli C, Buckland KF, Buckridge S et al (2011) The C76R transmembrane activator and calcium modulator cyclophilin ligand interactor mutation disrupts antibody production and B-cell homeostasis in heterozygous and homozygous mice. J Allergy Clin Immunol 127(5):1253–1259 e1213 CrossRefPubMed
21.
go back to reference Ameratunga R, Bartlett A, McCall J, Steele R, Woon ST, Katelaris CH (2016) Hereditary angioedema as a metabolic liver disorder: novel therapeutic options and prospects for cure. Front Immunol 7:547CrossRefPubMedPubMedCentral Ameratunga R, Bartlett A, McCall J, Steele R, Woon ST, Katelaris CH (2016) Hereditary angioedema as a metabolic liver disorder: novel therapeutic options and prospects for cure. Front Immunol 7:547CrossRefPubMedPubMedCentral
22.
go back to reference Fliegauf ML, Bryant V, Frede N et al (2015) Haploinsufficiency of the NF-κB1 subunit p50 in common variable immunodeficiency. Am J Hum Genet 97(3):389–403CrossRefPubMedPubMedCentral Fliegauf ML, Bryant V, Frede N et al (2015) Haploinsufficiency of the NF-κB1 subunit p50 in common variable immunodeficiency. Am J Hum Genet 97(3):389–403CrossRefPubMedPubMedCentral
24.
go back to reference Raje N, Soden S, Swanson D, Ciaccio CE, Kingsmore SF, Dinwiddie DL (2014) Utility of next generation sequencing in clinical primary immunodeficiencies. Curr Allergy Asthma Rep 14(10):468CrossRefPubMedPubMedCentral Raje N, Soden S, Swanson D, Ciaccio CE, Kingsmore SF, Dinwiddie DL (2014) Utility of next generation sequencing in clinical primary immunodeficiencies. Curr Allergy Asthma Rep 14(10):468CrossRefPubMedPubMedCentral
25.
go back to reference Grimbacher B, Warnatz K, Yong PF, Korganow AS, Peter HH (2016) The crossroads of autoimmunity and immunodeficiency: lessons from polygenic traits and monogenic defects. J Allergy Clin Immunol 137(1):3–17 quiz 18CrossRefPubMed Grimbacher B, Warnatz K, Yong PF, Korganow AS, Peter HH (2016) The crossroads of autoimmunity and immunodeficiency: lessons from polygenic traits and monogenic defects. J Allergy Clin Immunol 137(1):3–17 quiz 18CrossRefPubMed
26.
go back to reference Ameratunga R, Woon ST, Brewerton M et al (2011) Primary immune deficiency disorders in the South Pacific: the clinical utility of a customized genetic testing program in New Zealand. Ann N Y Acad Sci 1238:53–64CrossRefPubMed Ameratunga R, Woon ST, Brewerton M et al (2011) Primary immune deficiency disorders in the South Pacific: the clinical utility of a customized genetic testing program in New Zealand. Ann N Y Acad Sci 1238:53–64CrossRefPubMed
27.
go back to reference Ameratunga R, Woon ST, Neas K, Love DR (2010) The clinical utility of molecular diagnostic testing for primary immune deficiency disorders: a case based review. Allergy Asthma Clin Immunol 6(1):12CrossRefPubMedPubMedCentral Ameratunga R, Woon ST, Neas K, Love DR (2010) The clinical utility of molecular diagnostic testing for primary immune deficiency disorders: a case based review. Allergy Asthma Clin Immunol 6(1):12CrossRefPubMedPubMedCentral
28.
go back to reference Ameratunga R, Steele R, Jordan A et al (2016) The case for a national service for primary immune deficiency disorders in New Zealand. N Z Med J. 129(1436):75–90PubMed Ameratunga R, Steele R, Jordan A et al (2016) The case for a national service for primary immune deficiency disorders in New Zealand. N Z Med J. 129(1436):75–90PubMed
29.
go back to reference Ameratunga R, Woon ST (2009) Customised molecular diagnosis of primary immune deficiency disorders in New Zealand: an efficient strategy for a small developed country. N Z Med J 122(1304):46–53PubMed Ameratunga R, Woon ST (2009) Customised molecular diagnosis of primary immune deficiency disorders in New Zealand: an efficient strategy for a small developed country. N Z Med J 122(1304):46–53PubMed
30.
go back to reference Rodriguez-Cortez VC, Del Pino-Molina L, Rodriguez-Ubreva J et al (2015) Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naive-to-memory B-cell transition. Nat Commun 6:7335CrossRefPubMedPubMedCentral Rodriguez-Cortez VC, Del Pino-Molina L, Rodriguez-Ubreva J et al (2015) Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naive-to-memory B-cell transition. Nat Commun 6:7335CrossRefPubMedPubMedCentral
31.
go back to reference van Schouwenburg PA, Davenport EE, Kienzler AK et al (2015) Application of whole genome and RNA sequencing to investigate the genomic landscape of common variable immunodeficiency disorders. Clin Immunol 160(2):301–314CrossRefPubMedPubMedCentral van Schouwenburg PA, Davenport EE, Kienzler AK et al (2015) Application of whole genome and RNA sequencing to investigate the genomic landscape of common variable immunodeficiency disorders. Clin Immunol 160(2):301–314CrossRefPubMedPubMedCentral
32.
go back to reference Kienzler AK, Hargreaves CE, Patel SY (2017) The role of genomics in common variable immunodeficiency disorders. Clin Exp Immunol 188(3):326–332CrossRefPubMed Kienzler AK, Hargreaves CE, Patel SY (2017) The role of genomics in common variable immunodeficiency disorders. Clin Exp Immunol 188(3):326–332CrossRefPubMed
33.
go back to reference Ameratunga R, Koopmans W, Woon ST, et al. Epistatic interactions between mutations of TACI (TNFRS13B) and TCF3 result in a severe primary immunodeficiency disorder and systemic lupus erythematosus. Clin Transl Immunol (Nature). 2017;(in press) Ameratunga R, Koopmans W, Woon ST, et al. Epistatic interactions between mutations of TACI (TNFRS13B) and TCF3 result in a severe primary immunodeficiency disorder and systemic lupus erythematosus. Clin Transl Immunol (Nature). 2017;(in press)
34.
go back to reference Bateson (1909) Discussion on the influence of heredity on disease, with special reference to tuberculosis, cancer, and diseases of the nervous system: introductory address. Proc R Soc Med;2(Gen Rep):22–30 Bateson (1909) Discussion on the influence of heredity on disease, with special reference to tuberculosis, cancer, and diseases of the nervous system: introductory address. Proc R Soc Med;2(Gen Rep):22–30
35.
go back to reference Koopmans W, Woon ST, Brooks AE, Dunbar PR, Browett P, Ameratunga R (2013) Clinical variability of family members with the C104R mutation in transmembrane activator and calcium modulator and cyclophilin ligand interactor (TACI). J Clin Immunol 33(1):68–73CrossRefPubMed Koopmans W, Woon ST, Brooks AE, Dunbar PR, Browett P, Ameratunga R (2013) Clinical variability of family members with the C104R mutation in transmembrane activator and calcium modulator and cyclophilin ligand interactor (TACI). J Clin Immunol 33(1):68–73CrossRefPubMed
Metadata
Title
Review: Diagnosing Common Variable Immunodeficiency Disorder in the Era of Genome Sequencing
Authors
Rohan Ameratunga
Klaus Lehnert
See-Tarn Woon
David Gillis
Vanessa L. Bryant
Charlotte A. Slade
Richard Steele
Publication date
01-04-2018
Publisher
Springer US
Published in
Clinical Reviews in Allergy & Immunology / Issue 2/2018
Print ISSN: 1080-0549
Electronic ISSN: 1559-0267
DOI
https://doi.org/10.1007/s12016-017-8645-0

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