Skip to main content
Top
Published in: BMC Medical Research Methodology 1/2016

Open Access 01-12-2016 | Research article

Estimating time-varying exposure-outcome associations using case-control data: logistic and case-cohort analyses

Authors: Ruth H. Keogh, Punam Mangtani, Laura Rodrigues, Patrick Nguipdop Djomo

Published in: BMC Medical Research Methodology | Issue 1/2016

Login to get access

Abstract

Background

Traditional analyses of standard case-control studies using logistic regression do not allow estimation of time-varying associations between exposures and the outcome. We present two approaches which allow this. The motivation is a study of vaccine efficacy as a function of time since vaccination.

Methods

Our first approach is to estimate time-varying exposure-outcome associations by fitting a series of logistic regressions within successive time periods, reusing controls across periods. Our second approach treats the case-control sample as a case-cohort study, with the controls forming the subcohort. In the case-cohort analysis, controls contribute information at all times they are at risk. Extensions allow left truncation, frequency matching and, using the case-cohort analysis, time-varying exposures. Simulations are used to investigate the methods.

Results

The simulation results show that both methods give correct estimates of time-varying effects of exposures using standard case-control data. Using the logistic approach there are efficiency gains by reusing controls over time and care should be taken over the definition of controls within time periods. However, using the case-cohort analysis there is no ambiguity over the definition of controls.
The performance of the two analyses is very similar when controls are used most efficiently under the logistic approach.

Conclusions

Using our methods, case-control studies can be used to estimate time-varying exposure-outcome associations where they may not previously have been considered. The case-cohort analysis has several advantages, including that it allows estimation of time-varying associations as a continuous function of time, while the logistic regression approach is restricted to assuming a step function form for the time-varying association.
Literature
1.
go back to reference Breslow NE, Day NE. Statistical methods in cancer research. Volume 1: The analysis of case-control studies. Lyon: International Agency for Research on Cancer Scientific Publications No 32; 1980. Breslow NE, Day NE. Statistical methods in cancer research. Volume 1: The analysis of case-control studies. Lyon: International Agency for Research on Cancer Scientific Publications No 32; 1980.
2.
3.
go back to reference Keogh RH, Cox DR. Case-control studies. Cambridge: Cambridge University Press; 2014.CrossRef Keogh RH, Cox DR. Case-control studies. Cambridge: Cambridge University Press; 2014.CrossRef
4.
go back to reference Prentice RL. A case-cohort design for epidemiologic cohort studies and disease prevention trials. Biometrika. 1986;73:1–11.CrossRef Prentice RL. A case-cohort design for epidemiologic cohort studies and disease prevention trials. Biometrika. 1986;73:1–11.CrossRef
5.
go back to reference Onland-Moret NC, van der A DL, van der Schouw YT, Buschers W, Elias SG, van Gils CH, et al. Analysis of case-cohort data: a comparison of different methods. J Clin Epidemiol. 2007;60:350–5.PubMedCrossRef Onland-Moret NC, van der A DL, van der Schouw YT, Buschers W, Elias SG, van Gils CH, et al. Analysis of case-cohort data: a comparison of different methods. J Clin Epidemiol. 2007;60:350–5.PubMedCrossRef
6.
go back to reference Rodrigues LC, Smith PG. Use of the case-control approach in vaccine evaluation: efficacy and adverse effects. Epidemiological Reviews. 1999;21:56–72.CrossRef Rodrigues LC, Smith PG. Use of the case-control approach in vaccine evaluation: efficacy and adverse effects. Epidemiological Reviews. 1999;21:56–72.CrossRef
7.
go back to reference Prentice RL, Pyke R. Logistic disease incidence models and case-control studies. Biometrika. 1979;66:403–11.CrossRef Prentice RL, Pyke R. Logistic disease incidence models and case-control studies. Biometrika. 1979;66:403–11.CrossRef
8.
go back to reference Lubin JH, Gail MH. Biased selection of controls for case-control analyses of cohort studies. Biometrics. 1984;40:63–75.PubMedCrossRef Lubin JH, Gail MH. Biased selection of controls for case-control analyses of cohort studies. Biometrics. 1984;40:63–75.PubMedCrossRef
9.
go back to reference Robins LM, Gail MH, Lubin JH. More on "Biased selection of controls for case-control analyses of cohort studies". Biometrics. 1986;42:293–9.PubMedCrossRef Robins LM, Gail MH, Lubin JH. More on "Biased selection of controls for case-control analyses of cohort studies". Biometrics. 1986;42:293–9.PubMedCrossRef
10.
go back to reference Cox DR. Regression models and life tables. J Roy Stat Soc B. 1972;34:187–220. Cox DR. Regression models and life tables. J Roy Stat Soc B. 1972;34:187–220.
11.
go back to reference Hess K. Assessing time-by-covariate interactions in proportional hazards regression models using cubic spline functions. Stat Med. 1994;13:1045–62.PubMedCrossRef Hess K. Assessing time-by-covariate interactions in proportional hazards regression models using cubic spline functions. Stat Med. 1994;13:1045–62.PubMedCrossRef
12.
go back to reference Quantin C, Abrahamowicz M, Moreau T, Bartlett G, MacKenzie T, Tazi M, et al. Variation over time of the effects of prognostic factors in a population-based study of colon cancer: comparison of statistical methods. Am J Epidemiol. 1999;150:1188–200.PubMedCrossRef Quantin C, Abrahamowicz M, Moreau T, Bartlett G, MacKenzie T, Tazi M, et al. Variation over time of the effects of prognostic factors in a population-based study of colon cancer: comparison of statistical methods. Am J Epidemiol. 1999;150:1188–200.PubMedCrossRef
14.
go back to reference Breslow NE. Contribution to the discussion of the paper by D.R. Cox. J Roy Stat Soc B. 1972;34:216–7. Breslow NE. Contribution to the discussion of the paper by D.R. Cox. J Roy Stat Soc B. 1972;34:216–7.
15.
go back to reference Borgan Ø, Langholz B, Samuelsen SO, Goldstein L, Pogoda J. Exposure-stratified case-cohort designs. Lifetime Data Anal. 2000;6:39–58.PubMedCrossRef Borgan Ø, Langholz B, Samuelsen SO, Goldstein L, Pogoda J. Exposure-stratified case-cohort designs. Lifetime Data Anal. 2000;6:39–58.PubMedCrossRef
16.
go back to reference D'Agostino RB, Lee ML, Belanger AJ, Cupples LA, Anderson K, Kannel WB. Relation of pooled logistic regression to time dependent Cox regression analysis: the Framingham Heart Study. Stat Med. 1990;9:1501–15.PubMedCrossRef D'Agostino RB, Lee ML, Belanger AJ, Cupples LA, Anderson K, Kannel WB. Relation of pooled logistic regression to time dependent Cox regression analysis: the Framingham Heart Study. Stat Med. 1990;9:1501–15.PubMedCrossRef
17.
go back to reference Health Protection Agency . Tuberculosis in the UK: Annual report on tuberculosis surveillance in the UK 2008. Health Protection Agency 2008; ISBN 978-0-901144-96-6. Health Protection Agency . Tuberculosis in the UK: Annual report on tuberculosis surveillance in the UK 2008. Health Protection Agency 2008; ISBN 978-0-901144-96-6.
18.
go back to reference Niccolai LM, Ogden LG, Muehlenbein CE, Dziura JD, Vázquez M, Shapiro ED. Methodological Issues in Design and analysis of a matched case-control study of a vaccine’s effectiveness. J Clin Epidemiol. 2007;60:1127–31.PubMedPubMedCentralCrossRef Niccolai LM, Ogden LG, Muehlenbein CE, Dziura JD, Vázquez M, Shapiro ED. Methodological Issues in Design and analysis of a matched case-control study of a vaccine’s effectiveness. J Clin Epidemiol. 2007;60:1127–31.PubMedPubMedCentralCrossRef
19.
go back to reference Vazquez M, LaRussa PS, Gershon AA, Niccolai LM, Muehlenbein CE, Steinberg SP, et al. Effectiveness over time of varicella vaccine. JAMA. 2004;291:851–5.PubMedCrossRef Vazquez M, LaRussa PS, Gershon AA, Niccolai LM, Muehlenbein CE, Steinberg SP, et al. Effectiveness over time of varicella vaccine. JAMA. 2004;291:851–5.PubMedCrossRef
20.
go back to reference Suissa S, Dell'Aniello S, Martinez C. The multitime case-control design for time-varying exposures. Epidemiology. 2010;21:876–83.PubMedCrossRef Suissa S, Dell'Aniello S, Martinez C. The multitime case-control design for time-varying exposures. Epidemiology. 2010;21:876–83.PubMedCrossRef
21.
go back to reference Leffondre K, Abrahamowicz M, Siemiatycki J. Evaluation of Cox's model and logistic regression for matched case-control data with time-dependent covariates: a simulation study. Stat Med. 2003;22:3781–94.PubMedCrossRef Leffondre K, Abrahamowicz M, Siemiatycki J. Evaluation of Cox's model and logistic regression for matched case-control data with time-dependent covariates: a simulation study. Stat Med. 2003;22:3781–94.PubMedCrossRef
22.
go back to reference Freedman LS, Oberman B, Sadetzki S. Using time-dependent covariate analysis to elucidate the relation of smoking history to Warthin’s tumor risk. Am J Epidemiol. 2009;170:1178–85.PubMedCrossRef Freedman LS, Oberman B, Sadetzki S. Using time-dependent covariate analysis to elucidate the relation of smoking history to Warthin’s tumor risk. Am J Epidemiol. 2009;170:1178–85.PubMedCrossRef
23.
go back to reference Leffondre K, Wynant W, Cao Z, Abrahamowicz M, Heinze G, Siemiatycki J. A weighted Cox model for modelling time-dependent exposures in the analysis of case-control studies. Stat Med. 2010;29:839–50.PubMedCrossRef Leffondre K, Wynant W, Cao Z, Abrahamowicz M, Heinze G, Siemiatycki J. A weighted Cox model for modelling time-dependent exposures in the analysis of case-control studies. Stat Med. 2010;29:839–50.PubMedCrossRef
Metadata
Title
Estimating time-varying exposure-outcome associations using case-control data: logistic and case-cohort analyses
Authors
Ruth H. Keogh
Punam Mangtani
Laura Rodrigues
Patrick Nguipdop Djomo
Publication date
01-12-2016
Publisher
BioMed Central
Published in
BMC Medical Research Methodology / Issue 1/2016
Electronic ISSN: 1471-2288
DOI
https://doi.org/10.1186/s12874-015-0104-0

Other articles of this Issue 1/2016

BMC Medical Research Methodology 1/2016 Go to the issue