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Published in: BMC Medicine 1/2013

Open Access 01-12-2013 | Review

The sweet and sour of serological glycoprotein tumor biomarker quantification

Authors: Uros Kuzmanov, Hari Kosanam, Eleftherios P Diamandis

Published in: BMC Medicine | Issue 1/2013

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Abstract

Aberrant and dysregulated protein glycosylation is a well-established event in the process of oncogenesis and cancer progression. Years of study on the glycobiology of cancer have been focused on the development of clinically viable diagnostic applications of this knowledge. However, for a number of reasons, there has been only sparse and varied success. The causes of this range from technical to biological issues that arise when studying protein glycosylation and attempting to apply it to practical applications. This review focuses on the pitfalls, advances, and future directions to be taken in the development of clinically applicable quantitative assays using glycan moieties from serum-based proteins as analytes. Topics covered include the development and progress of applications of lectins, mass spectrometry, and other technologies towards this purpose. Slowly but surely, novel applications of established and development of new technologies will eventually provide us with the tools to reach the ultimate goal of quantification of the full scope of heterogeneity associated with the glycosylation of biomarker candidate glycoproteins in a clinically applicable fashion.
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Literature
1.
go back to reference Cunningham S, Gerlach JQ, Kane M, Joshi L: Glyco-biosensors: Recent advances and applications for the detection of free and bound carbohydrates. Analyst. 2010, 135: 2471-2480. 10.1039/c0an00276c.PubMed Cunningham S, Gerlach JQ, Kane M, Joshi L: Glyco-biosensors: Recent advances and applications for the detection of free and bound carbohydrates. Analyst. 2010, 135: 2471-2480. 10.1039/c0an00276c.PubMed
2.
go back to reference Dalpathado DS, Desaire H: Glycopeptide analysis by mass spectrometry. Analyst. 2008, 133: 731-738. 10.1039/b713816d.PubMed Dalpathado DS, Desaire H: Glycopeptide analysis by mass spectrometry. Analyst. 2008, 133: 731-738. 10.1039/b713816d.PubMed
3.
go back to reference Reinders J, Sickmann A: Modificomics: posttranslational modifications beyond protein phosphorylation and glycosylation. Biomol Eng. 2007, 24: 169-177. 10.1016/j.bioeng.2007.03.002.PubMed Reinders J, Sickmann A: Modificomics: posttranslational modifications beyond protein phosphorylation and glycosylation. Biomol Eng. 2007, 24: 169-177. 10.1016/j.bioeng.2007.03.002.PubMed
4.
go back to reference Walsh CT, Garneau-Tsodikova S, Gatto GJ: Protein posttranslational modifications: the chemistry of proteome diversifications. Angew Chem Int Ed Engl. 2005, 44: 7342-7372. 10.1002/anie.200501023.PubMed Walsh CT, Garneau-Tsodikova S, Gatto GJ: Protein posttranslational modifications: the chemistry of proteome diversifications. Angew Chem Int Ed Engl. 2005, 44: 7342-7372. 10.1002/anie.200501023.PubMed
5.
go back to reference Crocker PR, Feizi T: Carbohydrate recognition systems: functional triads in cell-cell interactions. Curr Opin Struct Biol. 1996, 6: 679-691. 10.1016/S0959-440X(96)80036-4.PubMed Crocker PR, Feizi T: Carbohydrate recognition systems: functional triads in cell-cell interactions. Curr Opin Struct Biol. 1996, 6: 679-691. 10.1016/S0959-440X(96)80036-4.PubMed
6.
go back to reference Feizi T: Carbohydrate-mediated recognition systems in innate immunity. Immunol Rev. 2000, 173: 79-88. 10.1034/j.1600-065X.2000.917310.x.PubMed Feizi T: Carbohydrate-mediated recognition systems in innate immunity. Immunol Rev. 2000, 173: 79-88. 10.1034/j.1600-065X.2000.917310.x.PubMed
7.
go back to reference Gabius HJ, Siebert HC, Andre S, Jimenez-Barbero J, Rudiger H: Chemical biology of the sugar code. Chembiochem. 2004, 5: 740-764. 10.1002/cbic.200300753.PubMed Gabius HJ, Siebert HC, Andre S, Jimenez-Barbero J, Rudiger H: Chemical biology of the sugar code. Chembiochem. 2004, 5: 740-764. 10.1002/cbic.200300753.PubMed
8.
go back to reference Helenius A, Aebi M: Intracellular functions of N-linked glycans. Science. 2001, 291: 2364-2369. 10.1126/science.291.5512.2364.PubMed Helenius A, Aebi M: Intracellular functions of N-linked glycans. Science. 2001, 291: 2364-2369. 10.1126/science.291.5512.2364.PubMed
9.
go back to reference Karlsson KA: Meaning and therapeutic potential of microbial recognition of host glycoconjugates. Mol Microbiol. 1998, 29: 1-11. 10.1046/j.1365-2958.1998.00854.x.PubMed Karlsson KA: Meaning and therapeutic potential of microbial recognition of host glycoconjugates. Mol Microbiol. 1998, 29: 1-11. 10.1046/j.1365-2958.1998.00854.x.PubMed
10.
go back to reference Apweiler R, Hermjakob H, Sharon N: On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim Biophys Acta. 1999, 1473: 4-8. 10.1016/S0304-4165(99)00165-8.PubMed Apweiler R, Hermjakob H, Sharon N: On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim Biophys Acta. 1999, 1473: 4-8. 10.1016/S0304-4165(99)00165-8.PubMed
11.
go back to reference Cummings RD: The repertoire of glycan determinants in the human glycome. Mol Biosyst. 2009, 5: 1087-1104. 10.1039/b907931a.PubMed Cummings RD: The repertoire of glycan determinants in the human glycome. Mol Biosyst. 2009, 5: 1087-1104. 10.1039/b907931a.PubMed
12.
go back to reference Schachter H, Freeze HH: Glycosylation diseases: quo vadis?. Biochim Biophys Acta. 2009, 1792: 925-930. 10.1016/j.bbadis.2008.11.002.PubMed Schachter H, Freeze HH: Glycosylation diseases: quo vadis?. Biochim Biophys Acta. 2009, 1792: 925-930. 10.1016/j.bbadis.2008.11.002.PubMed
13.
go back to reference Spiro RG: Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. Glycobiology. 2002, 12: 43R-56R. 10.1093/glycob/12.4.43R.PubMed Spiro RG: Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. Glycobiology. 2002, 12: 43R-56R. 10.1093/glycob/12.4.43R.PubMed
14.
go back to reference Meezan E, Wu HC, Black PH, Robbins PW: Comparative studies on the carbohydrate-containing membrane components of normal and virus-transformed mouse fibroblasts. II. Separation of glycoproteins and glycopeptides by sephadex chromatography. Biochemistry. 1969, 8: 2518-2524. 10.1021/bi00834a039.PubMed Meezan E, Wu HC, Black PH, Robbins PW: Comparative studies on the carbohydrate-containing membrane components of normal and virus-transformed mouse fibroblasts. II. Separation of glycoproteins and glycopeptides by sephadex chromatography. Biochemistry. 1969, 8: 2518-2524. 10.1021/bi00834a039.PubMed
15.
go back to reference Wu HC, Meezan E, Black PH, Robbins PW: Comparative studies on the carbohydrate-containing membrane components of normal and virus-transformed mouse fibroblasts. I. Glucosamine-labeling patterns in 3T3, spontaneously transformed 3T3, and SV-40-transformed 3T3 cells. Biochemistry. 1969, 8: 2509-2517. 10.1021/bi00834a038.PubMed Wu HC, Meezan E, Black PH, Robbins PW: Comparative studies on the carbohydrate-containing membrane components of normal and virus-transformed mouse fibroblasts. I. Glucosamine-labeling patterns in 3T3, spontaneously transformed 3T3, and SV-40-transformed 3T3 cells. Biochemistry. 1969, 8: 2509-2517. 10.1021/bi00834a038.PubMed
16.
go back to reference Brooks SA: Strategies for analysis of the glycosylation of proteins: current status and future perspectives. Mol Biotechnol. 2009, 43: 76-88. 10.1007/s12033-009-9184-6.PubMed Brooks SA: Strategies for analysis of the glycosylation of proteins: current status and future perspectives. Mol Biotechnol. 2009, 43: 76-88. 10.1007/s12033-009-9184-6.PubMed
17.
go back to reference Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson BW, Fisher SJ: Sweetening the pot: adding glycosylation to the biomarker discovery equation. Clin Chem. 2010, 56: 223-236. 10.1373/clinchem.2009.136333.PubMed Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson BW, Fisher SJ: Sweetening the pot: adding glycosylation to the biomarker discovery equation. Clin Chem. 2010, 56: 223-236. 10.1373/clinchem.2009.136333.PubMed
18.
go back to reference Arnold JN, Saldova R, Hamid UM, Rudd PM: Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation. Proteomics. 2008, 8: 3284-3293. 10.1002/pmic.200800163.PubMed Arnold JN, Saldova R, Hamid UM, Rudd PM: Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation. Proteomics. 2008, 8: 3284-3293. 10.1002/pmic.200800163.PubMed
19.
go back to reference Dennis JW, Granovsky M, Warren CE: Glycoprotein glycosylation and cancer progression. Biochim Biophys Acta. 1999, 1473: 21-34. 10.1016/S0304-4165(99)00167-1.PubMed Dennis JW, Granovsky M, Warren CE: Glycoprotein glycosylation and cancer progression. Biochim Biophys Acta. 1999, 1473: 21-34. 10.1016/S0304-4165(99)00167-1.PubMed
20.
go back to reference Dube DH, Bertozzi CR: Glycans in cancer and inflammation--potential for therapeutics and diagnostics. Nat Rev Drug Discov. 2005, 4: 477-488. 10.1038/nrd1751.PubMed Dube DH, Bertozzi CR: Glycans in cancer and inflammation--potential for therapeutics and diagnostics. Nat Rev Drug Discov. 2005, 4: 477-488. 10.1038/nrd1751.PubMed
21.
go back to reference Gorelik E, Galili U, Raz A: On the role of cell surface carbohydrates and their binding proteins (lectins) in tumor metastasis. Cancer Metastasis Rev. 2001, 20: 245-277. 10.1023/A:1015535427597.PubMed Gorelik E, Galili U, Raz A: On the role of cell surface carbohydrates and their binding proteins (lectins) in tumor metastasis. Cancer Metastasis Rev. 2001, 20: 245-277. 10.1023/A:1015535427597.PubMed
22.
go back to reference Hakomori S: Glycosylation defining cancer malignancy: new wine in an old bottle. Proc Natl Acad Sci USA. 2002, 99: 10231-10233. 10.1073/pnas.172380699.PubMedPubMedCentral Hakomori S: Glycosylation defining cancer malignancy: new wine in an old bottle. Proc Natl Acad Sci USA. 2002, 99: 10231-10233. 10.1073/pnas.172380699.PubMedPubMedCentral
23.
go back to reference Granovsky M, Fata J, Pawling J, Muller WJ, Khokha R, Dennis JW: Suppression of tumor growth and metastasis in Mgat5-deficient mice. Nat Med. 2000, 6: 306-312. 10.1038/73163.PubMed Granovsky M, Fata J, Pawling J, Muller WJ, Khokha R, Dennis JW: Suppression of tumor growth and metastasis in Mgat5-deficient mice. Nat Med. 2000, 6: 306-312. 10.1038/73163.PubMed
24.
go back to reference Guo HB, Lee I, Kamar M, Pierce M: N-acetylglucosaminyltransferase V expression levels regulate cadherin-associated homotypic cell-cell adhesion and intracellular signaling pathways. J Biol Chem. 2003, 278: 52412-52424. 10.1074/jbc.M308837200.PubMed Guo HB, Lee I, Kamar M, Pierce M: N-acetylglucosaminyltransferase V expression levels regulate cadherin-associated homotypic cell-cell adhesion and intracellular signaling pathways. J Biol Chem. 2003, 278: 52412-52424. 10.1074/jbc.M308837200.PubMed
25.
go back to reference Handerson T, Camp R, Harigopal M, Rimm D, Pawelek J: Beta1,6-branched oligosaccharides are increased in lymph node metastases and predict poor outcome in breast carcinoma. Clin Cancer Res. 2005, 11: 2969-2973. 10.1158/1078-0432.CCR-04-2211.PubMed Handerson T, Camp R, Harigopal M, Rimm D, Pawelek J: Beta1,6-branched oligosaccharides are increased in lymph node metastases and predict poor outcome in breast carcinoma. Clin Cancer Res. 2005, 11: 2969-2973. 10.1158/1078-0432.CCR-04-2211.PubMed
26.
go back to reference Pinho SS, Reis CA, Paredes J, Magalhaes AM, Ferreira AC, Figueiredo J: The role of N-acetylglucosaminyltransferase III and V in the post-transcriptional modifications of E-cadherin. Hum Mol Genet. 2009, 18: 2599-2608. 10.1093/hmg/ddp194.PubMed Pinho SS, Reis CA, Paredes J, Magalhaes AM, Ferreira AC, Figueiredo J: The role of N-acetylglucosaminyltransferase III and V in the post-transcriptional modifications of E-cadherin. Hum Mol Genet. 2009, 18: 2599-2608. 10.1093/hmg/ddp194.PubMed
27.
go back to reference Takahashi M, Kuroki Y, Ohtsubo K, Taniguchi N: Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: their functions and target proteins. Carbohydr Res. 2009, 344: 1387-1390. 10.1016/j.carres.2009.04.031.PubMed Takahashi M, Kuroki Y, Ohtsubo K, Taniguchi N: Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: their functions and target proteins. Carbohydr Res. 2009, 344: 1387-1390. 10.1016/j.carres.2009.04.031.PubMed
28.
go back to reference Burchell J, Poulsom R, Hanby A, Whitehouse C, Cooper L, Clausen H: An alpha2,3 sialyltransferase (ST3Gal I) is elevated in primary breast carcinomas. Glycobiology. 1999, 9: 1307-1311. 10.1093/glycob/9.12.1307.PubMed Burchell J, Poulsom R, Hanby A, Whitehouse C, Cooper L, Clausen H: An alpha2,3 sialyltransferase (ST3Gal I) is elevated in primary breast carcinomas. Glycobiology. 1999, 9: 1307-1311. 10.1093/glycob/9.12.1307.PubMed
29.
go back to reference Meany D, Chan D: Aberrant glycosylation associated with enzymes as cancer biomarkers. Clinical Proteomics. 2011, 8: 7-10.1186/1559-0275-8-7.PubMedPubMedCentral Meany D, Chan D: Aberrant glycosylation associated with enzymes as cancer biomarkers. Clinical Proteomics. 2011, 8: 7-10.1186/1559-0275-8-7.PubMedPubMedCentral
30.
go back to reference Ogawa JI, Inoue H, Koide S: alpha-2,3-Sialyltransferase type 3N and alpha-1,3-fucosyltransferase type VII are related to sialyl Lewis(x) synthesis and patient survival from lung carcinoma. Cancer. 1997, 79: 1678-1685. 10.1002/(SICI)1097-0142(19970501)79:9<1678::AID-CNCR7>3.0.CO;2-8.PubMed Ogawa JI, Inoue H, Koide S: alpha-2,3-Sialyltransferase type 3N and alpha-1,3-fucosyltransferase type VII are related to sialyl Lewis(x) synthesis and patient survival from lung carcinoma. Cancer. 1997, 79: 1678-1685. 10.1002/(SICI)1097-0142(19970501)79:9<1678::AID-CNCR7>3.0.CO;2-8.PubMed
31.
go back to reference Petretti T, Kemmner W, Schulze B, Schlag PM: Altered mRNA expression of glycosyltransferases in human colorectal carcinomas and liver metastases. Gut. 2000, 46: 359-366. 10.1136/gut.46.3.359.PubMedPubMedCentral Petretti T, Kemmner W, Schulze B, Schlag PM: Altered mRNA expression of glycosyltransferases in human colorectal carcinomas and liver metastases. Gut. 2000, 46: 359-366. 10.1136/gut.46.3.359.PubMedPubMedCentral
32.
go back to reference Picco G, Julien S, Brockhausen I, Beatson R, Antonopoulos A, Haslam S: Over-expression of ST3Gal-I promotes mammary tumorigenesis. Glycobiology. 2010, 20: 1241-1250. 10.1093/glycob/cwq085.PubMedPubMedCentral Picco G, Julien S, Brockhausen I, Beatson R, Antonopoulos A, Haslam S: Over-expression of ST3Gal-I promotes mammary tumorigenesis. Glycobiology. 2010, 20: 1241-1250. 10.1093/glycob/cwq085.PubMedPubMedCentral
33.
go back to reference Recchi MA, Hebbar M, Hornez L, Harduin-Lepers A, Peyrat JP, Delannoy P: Multiplex reverse transcription polymerase chain reaction assessment of sialyltransferase expression in human breast cancer. Cancer Res. 1998, 58: 4066-4070.PubMed Recchi MA, Hebbar M, Hornez L, Harduin-Lepers A, Peyrat JP, Delannoy P: Multiplex reverse transcription polymerase chain reaction assessment of sialyltransferase expression in human breast cancer. Cancer Res. 1998, 58: 4066-4070.PubMed
34.
go back to reference Fukushima K, Satoh T, Baba S, Yamashita K: alpha1,2-Fucosylated and beta-N-acetylgalactosaminylated prostate-specific antigen as an efficient marker of prostatic cancer. Glycobiology. 2010, 20: 452-460. 10.1093/glycob/cwp197.PubMed Fukushima K, Satoh T, Baba S, Yamashita K: alpha1,2-Fucosylated and beta-N-acetylgalactosaminylated prostate-specific antigen as an efficient marker of prostatic cancer. Glycobiology. 2010, 20: 452-460. 10.1093/glycob/cwp197.PubMed
35.
go back to reference Jankovic MM, Milutinovic BS: Glycoforms of CA125 antigen as a possible cancer marker. Cancer Biomark. 2008, 4: 35-42.PubMed Jankovic MM, Milutinovic BS: Glycoforms of CA125 antigen as a possible cancer marker. Cancer Biomark. 2008, 4: 35-42.PubMed
36.
go back to reference Valmu L, Alfthan H, Hotakainen K, Birken S, Stenman UH: Site-specific glycan analysis of human chorionic gonadotropin beta-subunit from malignancies and pregnancy by liquid chromatography--electrospray mass spectrometry. Glycobiology. 2006, 16: 1207-1218. 10.1093/glycob/cwl034.PubMed Valmu L, Alfthan H, Hotakainen K, Birken S, Stenman UH: Site-specific glycan analysis of human chorionic gonadotropin beta-subunit from malignancies and pregnancy by liquid chromatography--electrospray mass spectrometry. Glycobiology. 2006, 16: 1207-1218. 10.1093/glycob/cwl034.PubMed
37.
go back to reference Saeland E, Belo AI, Mongera S, van Die I, Meijer GA, van Kooyk Y: Differential glycosylation of MUC1 and CEACAM5 between normal mucosa and tumour tissue of colon cancer patients. Int J Cancer. 2012, 131: 117-128. 10.1002/ijc.26354.PubMed Saeland E, Belo AI, Mongera S, van Die I, Meijer GA, van Kooyk Y: Differential glycosylation of MUC1 and CEACAM5 between normal mucosa and tumour tissue of colon cancer patients. Int J Cancer. 2012, 131: 117-128. 10.1002/ijc.26354.PubMed
38.
go back to reference Narimatsu H, Sawaki H, Kuno A, Kaji H, Ito H, Ikehara Y: A strategy for discovery of cancer glyco-biomarkers in serum using newly developed technologies for glycoproteomics. FEBS J. 2010, 277: 95-105. 10.1111/j.1742-4658.2009.07430.x.PubMed Narimatsu H, Sawaki H, Kuno A, Kaji H, Ito H, Ikehara Y: A strategy for discovery of cancer glyco-biomarkers in serum using newly developed technologies for glycoproteomics. FEBS J. 2010, 277: 95-105. 10.1111/j.1742-4658.2009.07430.x.PubMed
39.
go back to reference Pan S, Chen R, Aebersold R, Brentnall TA: Mass spectrometry based glycoproteomics - from a proteomics perspective. Mol Cell Proteomics. 2011, 10. Pan S, Chen R, Aebersold R, Brentnall TA: Mass spectrometry based glycoproteomics - from a proteomics perspective. Mol Cell Proteomics. 2011, 10.
40.
go back to reference Hua S, An HJ: Glycoscience aids in biomarker discovery. BMB Rep. 2012, 45: 323-330. 10.5483/BMBRep.2012.45.6.132.PubMed Hua S, An HJ: Glycoscience aids in biomarker discovery. BMB Rep. 2012, 45: 323-330. 10.5483/BMBRep.2012.45.6.132.PubMed
41.
go back to reference Adamczyk B, Tharmalingam T, Rudd PM: Glycans as cancer biomarkers. Biochim Biophys Acta. 2011 Adamczyk B, Tharmalingam T, Rudd PM: Glycans as cancer biomarkers. Biochim Biophys Acta. 2011
42.
go back to reference Goonetilleke KS, Siriwardena AK: Systematic review of carbohydrate antigen (CA 19-9) as a biochemical marker in the diagnosis of pancreatic cancer. Eur J Surg Oncol. 2007, 33: 266-270. 10.1016/j.ejso.2006.10.004.PubMed Goonetilleke KS, Siriwardena AK: Systematic review of carbohydrate antigen (CA 19-9) as a biochemical marker in the diagnosis of pancreatic cancer. Eur J Surg Oncol. 2007, 33: 266-270. 10.1016/j.ejso.2006.10.004.PubMed
43.
go back to reference Donati M, Brancato G, Donati A: Clinical biomarkers in hepatocellular carcinoma (HCC). Front Biosci (Schol Ed). 2010, 2: 571-577. Donati M, Brancato G, Donati A: Clinical biomarkers in hepatocellular carcinoma (HCC). Front Biosci (Schol Ed). 2010, 2: 571-577.
44.
go back to reference Li D, Mallory T, Satomura S: AFP-L3: a new generation of tumor marker for hepatocellular carcinoma. Clin Chim Acta. 2001, 313: 15-19. 10.1016/S0009-8981(01)00644-1.PubMed Li D, Mallory T, Satomura S: AFP-L3: a new generation of tumor marker for hepatocellular carcinoma. Clin Chim Acta. 2001, 313: 15-19. 10.1016/S0009-8981(01)00644-1.PubMed
45.
go back to reference Gamblin DP, Scanlan EM, Davis BG: Glycoprotein synthesis: an update. Chem Rev. 2009, 109: 131-163. 10.1021/cr078291i.PubMed Gamblin DP, Scanlan EM, Davis BG: Glycoprotein synthesis: an update. Chem Rev. 2009, 109: 131-163. 10.1021/cr078291i.PubMed
46.
go back to reference Peracaula R, Tabares G, Royle L, Harvey DJ, Dwek RA, Rudd PM, de Llorens R: Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins. Glycobiology. 2003, 13: 457-470. 10.1093/glycob/cwg041.PubMed Peracaula R, Tabares G, Royle L, Harvey DJ, Dwek RA, Rudd PM, de Llorens R: Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins. Glycobiology. 2003, 13: 457-470. 10.1093/glycob/cwg041.PubMed
47.
go back to reference Anderson NL, Anderson NG: The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics. 2002, 1: 845-867. 10.1074/mcp.R200007-MCP200.PubMed Anderson NL, Anderson NG: The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics. 2002, 1: 845-867. 10.1074/mcp.R200007-MCP200.PubMed
48.
go back to reference Sharon N, Lis H: History of lectins: from hemagglutinins to biological recognition molecules. Glycobiology. 2004, 14: 53R-62R. 10.1093/glycob/cwh122.PubMed Sharon N, Lis H: History of lectins: from hemagglutinins to biological recognition molecules. Glycobiology. 2004, 14: 53R-62R. 10.1093/glycob/cwh122.PubMed
49.
go back to reference Bies C, Lehr CM, Woodley JF: Lectin-mediated drug targeting: history and applications. Adv Drug Deliv Rev. 2004, 56: 425-435. 10.1016/j.addr.2003.10.030.PubMed Bies C, Lehr CM, Woodley JF: Lectin-mediated drug targeting: history and applications. Adv Drug Deliv Rev. 2004, 56: 425-435. 10.1016/j.addr.2003.10.030.PubMed
50.
go back to reference Sharon N, Lis H: Lectins: cell-agglutinating and sugar-specific proteins. Science. 1972, 177: 949-959. 10.1126/science.177.4053.949.PubMed Sharon N, Lis H: Lectins: cell-agglutinating and sugar-specific proteins. Science. 1972, 177: 949-959. 10.1126/science.177.4053.949.PubMed
51.
go back to reference McCoy JP, Varani J, Goldstein IJ: Enzyme-linked lectin assay (ELLA): use of alkaline phosphatase-conjugated Griffonia simplicifolia B4 isolectin for the detection of alpha-D-galactopyranosyl end groups. Anal Biochem. 1983, 130: 437-444. 10.1016/0003-2697(83)90613-9.PubMed McCoy JP, Varani J, Goldstein IJ: Enzyme-linked lectin assay (ELLA): use of alkaline phosphatase-conjugated Griffonia simplicifolia B4 isolectin for the detection of alpha-D-galactopyranosyl end groups. Anal Biochem. 1983, 130: 437-444. 10.1016/0003-2697(83)90613-9.PubMed
52.
go back to reference McCoy JP, Goldstein IJ, Varani J: A review of studies in our laboratory regarding ELLA methodology for the study of cell surface carbohydrates from tumors of varying metastatic potential. Tumour Biol. 1985, 6: 99-114.PubMed McCoy JP, Goldstein IJ, Varani J: A review of studies in our laboratory regarding ELLA methodology for the study of cell surface carbohydrates from tumors of varying metastatic potential. Tumour Biol. 1985, 6: 99-114.PubMed
53.
go back to reference Reddi AL, Sankaranarayanan K, Arulraj HS, Devaraj N, Devaraj H: Enzyme-linked PNA lectin-binding assay of serum T-antigen in patients with SCC of the uterine cervix. Cancer Lett. 2000, 149: 207-211. 10.1016/S0304-3835(99)00363-8.PubMed Reddi AL, Sankaranarayanan K, Arulraj HS, Devaraj N, Devaraj H: Enzyme-linked PNA lectin-binding assay of serum T-antigen in patients with SCC of the uterine cervix. Cancer Lett. 2000, 149: 207-211. 10.1016/S0304-3835(99)00363-8.PubMed
54.
go back to reference Zhang SL, Liang YR, Li JL, Dai YR, Huang D: Preliminary studies of serum glycoconjugates in patients with cancer using the enzyme-linked lectin assay. Cancer Biochem Biophys. 1990, 11: 211-216.PubMed Zhang SL, Liang YR, Li JL, Dai YR, Huang D: Preliminary studies of serum glycoconjugates in patients with cancer using the enzyme-linked lectin assay. Cancer Biochem Biophys. 1990, 11: 211-216.PubMed
55.
go back to reference Graham K, Keller K, Ezzell J, Doyle R: Enzyme-linked lectinosorbent assay (ELLA) for detecting Bacillus anthracis. Eur J Clin Microbiol. 1984, 3: 210-212. 10.1007/BF02014881.PubMed Graham K, Keller K, Ezzell J, Doyle R: Enzyme-linked lectinosorbent assay (ELLA) for detecting Bacillus anthracis. Eur J Clin Microbiol. 1984, 3: 210-212. 10.1007/BF02014881.PubMed
56.
go back to reference Leriche V, Sibille P, Carpentier B: Use of an enzyme-linked lectinsorbent assay to monitor the shift in polysaccharide composition in bacterial biofilms. Appl Environ Microbiol. 2000, 66: 1851-1856. 10.1128/AEM.66.5.1851-1856.2000.PubMedPubMedCentral Leriche V, Sibille P, Carpentier B: Use of an enzyme-linked lectinsorbent assay to monitor the shift in polysaccharide composition in bacterial biofilms. Appl Environ Microbiol. 2000, 66: 1851-1856. 10.1128/AEM.66.5.1851-1856.2000.PubMedPubMedCentral
57.
go back to reference Thomas VL, Sanford BA, Moreno R, Ramsay MA: Enzyme-linked lectinsorbent assay measures N-acetyl-D-glucosamine in matrix of biofilm produced by Staphylococcus epidermidis. Curr Microbiol. 1997, 35: 249-254. 10.1007/s002849900248.PubMed Thomas VL, Sanford BA, Moreno R, Ramsay MA: Enzyme-linked lectinsorbent assay measures N-acetyl-D-glucosamine in matrix of biofilm produced by Staphylococcus epidermidis. Curr Microbiol. 1997, 35: 249-254. 10.1007/s002849900248.PubMed
58.
go back to reference Parker N, Makin CA, Ching CK, Eccleston D, Taylor OM, Milton JD, Rhodes JM: A new enzyme-linked lectin/mucin antibody sandwich assay (CAM 17.1/WGA) assessed in combination with CA 19-9 and peanut lectin binding assay for the diagnosis of pancreatic cancer. Cancer. 1992, 70: 1062-1068. 10.1002/1097-0142(19920901)70:5<1062::AID-CNCR2820700509>3.0.CO;2-P.PubMed Parker N, Makin CA, Ching CK, Eccleston D, Taylor OM, Milton JD, Rhodes JM: A new enzyme-linked lectin/mucin antibody sandwich assay (CAM 17.1/WGA) assessed in combination with CA 19-9 and peanut lectin binding assay for the diagnosis of pancreatic cancer. Cancer. 1992, 70: 1062-1068. 10.1002/1097-0142(19920901)70:5<1062::AID-CNCR2820700509>3.0.CO;2-P.PubMed
59.
go back to reference Gornik O, Lauc G: Enzyme linked lectin assay (ELLA) for direct analysis of transferrin sialylation in serum samples. Clin Biochem. 2007, 40: 718-723. 10.1016/j.clinbiochem.2007.01.010.PubMed Gornik O, Lauc G: Enzyme linked lectin assay (ELLA) for direct analysis of transferrin sialylation in serum samples. Clin Biochem. 2007, 40: 718-723. 10.1016/j.clinbiochem.2007.01.010.PubMed
60.
go back to reference Dwek MV, Jenks A, Leathem AJ: A sensitive assay to measure biomarker glycosylation demonstrates increased fucosylation of prostate specific antigen (PSA) in patients with prostate cancer compared with benign prostatic hyperplasia. Clin Chim Acta. 2010, 411: 1935-1939. 10.1016/j.cca.2010.08.009.PubMed Dwek MV, Jenks A, Leathem AJ: A sensitive assay to measure biomarker glycosylation demonstrates increased fucosylation of prostate specific antigen (PSA) in patients with prostate cancer compared with benign prostatic hyperplasia. Clin Chim Acta. 2010, 411: 1935-1939. 10.1016/j.cca.2010.08.009.PubMed
61.
go back to reference Kim HJ, Lee SJ: Antibody-based enzyme-linked lectin assay (ABELLA) for the sialylated recombinant human erythropoietin present in culture supernatant. J Pharm Biomed Anal. 2008, 48: 716-721. 10.1016/j.jpba.2008.07.004.PubMed Kim HJ, Lee SJ: Antibody-based enzyme-linked lectin assay (ABELLA) for the sialylated recombinant human erythropoietin present in culture supernatant. J Pharm Biomed Anal. 2008, 48: 716-721. 10.1016/j.jpba.2008.07.004.PubMed
62.
go back to reference Cook DB, Bustamam AA, Brotherick I, Shenton BK, Self CH: Lectin ELISA for the c-erb-B2 tumor marker protein p185 in patients with breast cancer and controls. Clin Chem. 1999, 45: 292-295.PubMed Cook DB, Bustamam AA, Brotherick I, Shenton BK, Self CH: Lectin ELISA for the c-erb-B2 tumor marker protein p185 in patients with breast cancer and controls. Clin Chem. 1999, 45: 292-295.PubMed
63.
go back to reference Matsumoto H, Shinzaki S, Narisada M, Kawamoto S, Kuwamoto K, Moriwaki K, Kanke F, Satomura S, Kumada T, Miyoshi E: Clinical application of a lectin-antibody ELISA to measure fucosylated haptoglobin in sera of patients with pancreatic cancer. Clin Chem Lab Med. 2010, 48: 505-512.PubMed Matsumoto H, Shinzaki S, Narisada M, Kawamoto S, Kuwamoto K, Moriwaki K, Kanke F, Satomura S, Kumada T, Miyoshi E: Clinical application of a lectin-antibody ELISA to measure fucosylated haptoglobin in sera of patients with pancreatic cancer. Clin Chem Lab Med. 2010, 48: 505-512.PubMed
64.
go back to reference Chen S, Haab BB: Analysis of glycans on serum proteins using antibody microarrays. Methods Mol Biol. 2009, 520: 39-58. 10.1007/978-1-60327-811-9_4.PubMedPubMedCentral Chen S, Haab BB: Analysis of glycans on serum proteins using antibody microarrays. Methods Mol Biol. 2009, 520: 39-58. 10.1007/978-1-60327-811-9_4.PubMedPubMedCentral
65.
go back to reference Li C, Lubman DM: Analysis of serum protein glycosylation with antibody-lectin microarray for high-throughput biomarker screening. Methods Mol Biol. 2011, 723: 15-28. 10.1007/978-1-61779-043-0_2.PubMed Li C, Lubman DM: Analysis of serum protein glycosylation with antibody-lectin microarray for high-throughput biomarker screening. Methods Mol Biol. 2011, 723: 15-28. 10.1007/978-1-61779-043-0_2.PubMed
66.
go back to reference Thompson R, Creavin A, O'Connell M, O'Connor B, Clarke P: Optimization of the enzyme-linked lectin assay for enhanced glycoprotein and glycoconjugate analysis. Anal Biochem. 2011, 413: 114-122. 10.1016/j.ab.2011.02.013.PubMed Thompson R, Creavin A, O'Connell M, O'Connor B, Clarke P: Optimization of the enzyme-linked lectin assay for enhanced glycoprotein and glycoconjugate analysis. Anal Biochem. 2011, 413: 114-122. 10.1016/j.ab.2011.02.013.PubMed
67.
go back to reference Meany DL, Sokoll LJ, Chan DW: Early Detection of Cancer: Immunoassays for Plasma Tumor Markers. Expert Opin Med Diagn. 2009, 3: 597-605. 10.1517/17530050903266830.PubMedPubMedCentral Meany DL, Sokoll LJ, Chan DW: Early Detection of Cancer: Immunoassays for Plasma Tumor Markers. Expert Opin Med Diagn. 2009, 3: 597-605. 10.1517/17530050903266830.PubMedPubMedCentral
68.
go back to reference Yoshida S, Kurokohchi K, Arima K, Masaki T, Hosomi N, Funaki T, Murota M, Kita Y, Watanabe S, Kuriyama S: Clinical significance of lens culinaris agglutinin-reactive fraction of serum alpha-fetoprotein in patients with hepatocellular carcinoma. Int J Oncol. 2002, 20: 305-309.PubMed Yoshida S, Kurokohchi K, Arima K, Masaki T, Hosomi N, Funaki T, Murota M, Kita Y, Watanabe S, Kuriyama S: Clinical significance of lens culinaris agglutinin-reactive fraction of serum alpha-fetoprotein in patients with hepatocellular carcinoma. Int J Oncol. 2002, 20: 305-309.PubMed
69.
go back to reference Johnson PJ, Poon TC, Hjelm NM, Ho CS, Ho SK, Welby C, Stevenson D, Patel T, Parekh R, Townsend RR: Glycan composition of serum alpha-fetoprotein in patients with hepatocellular carcinoma and non-seminomatous germ cell tumour. Br J Cancer. 1999, 81: 1188-1195. 10.1038/sj.bjc.6690828.PubMedPubMedCentral Johnson PJ, Poon TC, Hjelm NM, Ho CS, Ho SK, Welby C, Stevenson D, Patel T, Parekh R, Townsend RR: Glycan composition of serum alpha-fetoprotein in patients with hepatocellular carcinoma and non-seminomatous germ cell tumour. Br J Cancer. 1999, 81: 1188-1195. 10.1038/sj.bjc.6690828.PubMedPubMedCentral
70.
go back to reference Nakagawa T, Miyoshi E, Yakushijin T, Hiramatsu N, Igura T, Hayashi N, Taniguchi N, Kondo A: Glycomic analysis of alpha-fetoprotein L3 in hepatoma cell lines and hepatocellular carcinoma patients. J Proteome Res. 2008, 7: 2222-2233. 10.1021/pr700841q.PubMed Nakagawa T, Miyoshi E, Yakushijin T, Hiramatsu N, Igura T, Hayashi N, Taniguchi N, Kondo A: Glycomic analysis of alpha-fetoprotein L3 in hepatoma cell lines and hepatocellular carcinoma patients. J Proteome Res. 2008, 7: 2222-2233. 10.1021/pr700841q.PubMed
71.
go back to reference Haab BB, Yue T: High-throughput studies of protein glycoforms using antibody-lectin sandwich arrays. Methods Mol Biol. 2011, 785: 223-236. 10.1007/978-1-61779-286-1_15.PubMedPubMedCentral Haab BB, Yue T: High-throughput studies of protein glycoforms using antibody-lectin sandwich arrays. Methods Mol Biol. 2011, 785: 223-236. 10.1007/978-1-61779-286-1_15.PubMedPubMedCentral
72.
go back to reference Katrlik J, Svitel J, Gemeiner P, Kozar T, Tkac J: Glycan and lectin microarrays for glycomics and medicinal applications. Med Res Rev. 2010, 30: 394-418.PubMed Katrlik J, Svitel J, Gemeiner P, Kozar T, Tkac J: Glycan and lectin microarrays for glycomics and medicinal applications. Med Res Rev. 2010, 30: 394-418.PubMed
73.
go back to reference Patwa T, Li C, Simeone DM, Lubman DM: Glycoprotein analysis using protein microarrays and mass spectrometry. Mass Spectrom Rev. 2010, 29: 830-844. 10.1002/mas.20269.PubMedPubMedCentral Patwa T, Li C, Simeone DM, Lubman DM: Glycoprotein analysis using protein microarrays and mass spectrometry. Mass Spectrom Rev. 2010, 29: 830-844. 10.1002/mas.20269.PubMedPubMedCentral
74.
go back to reference Haab BB, Porter A, Yue T, Li L, Scheiman J, Anderson MA, Barnes D, Schmidt CM, Feng Z, Simeone DM: Glycosylation variants of mucins and CEACAMs as candidate biomarkers for the diagnosis of pancreatic cystic neoplasms. Ann Surg. 2010, 251: 937-945. 10.1097/SLA.0b013e3181d7738d.PubMedPubMedCentral Haab BB, Porter A, Yue T, Li L, Scheiman J, Anderson MA, Barnes D, Schmidt CM, Feng Z, Simeone DM: Glycosylation variants of mucins and CEACAMs as candidate biomarkers for the diagnosis of pancreatic cystic neoplasms. Ann Surg. 2010, 251: 937-945. 10.1097/SLA.0b013e3181d7738d.PubMedPubMedCentral
75.
go back to reference Li C, Simeone DM, Brenner DE, Anderson MA, Shedden KA, Ruffin MT, Lubman DM: Pancreatic cancer serum detection using a lectin/glyco-antibody array method. J Proteome Res. 2009, 8: 483-492. 10.1021/pr8007013.PubMedPubMedCentral Li C, Simeone DM, Brenner DE, Anderson MA, Shedden KA, Ruffin MT, Lubman DM: Pancreatic cancer serum detection using a lectin/glyco-antibody array method. J Proteome Res. 2009, 8: 483-492. 10.1021/pr8007013.PubMedPubMedCentral
76.
go back to reference Yue T, Goldstein IJ, Hollingsworth MA, Kaul K, Brand RE, Haab BB: The prevalence and nature of glycan alterations on specific proteins in pancreatic cancer patients revealed using antibody-lectin sandwich arrays. Mol Cell Proteomics. 2009, 8: 1697-1707. 10.1074/mcp.M900135-MCP200.PubMedPubMedCentral Yue T, Goldstein IJ, Hollingsworth MA, Kaul K, Brand RE, Haab BB: The prevalence and nature of glycan alterations on specific proteins in pancreatic cancer patients revealed using antibody-lectin sandwich arrays. Mol Cell Proteomics. 2009, 8: 1697-1707. 10.1074/mcp.M900135-MCP200.PubMedPubMedCentral
78.
go back to reference Meany DL, Zhang Z, Sokoll LJ, Zhang H, Chan DW: Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns. J Proteome Res. 2009, 8: 613-619. 10.1021/pr8007539.PubMedPubMedCentral Meany DL, Zhang Z, Sokoll LJ, Zhang H, Chan DW: Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns. J Proteome Res. 2009, 8: 613-619. 10.1021/pr8007539.PubMedPubMedCentral
79.
go back to reference Arnold JN, Saldova R, Galligan MC, Murphy TB, Mimura-Kimura Y, Telford JE, Godwin AK, Rudd PM: Novel glycan biomarkers for the detection of lung cancer. J Proteome Res. 2011, 10: 1755-1764. 10.1021/pr101034t.PubMed Arnold JN, Saldova R, Galligan MC, Murphy TB, Mimura-Kimura Y, Telford JE, Godwin AK, Rudd PM: Novel glycan biomarkers for the detection of lung cancer. J Proteome Res. 2011, 10: 1755-1764. 10.1021/pr101034t.PubMed
80.
go back to reference Bones J, Mittermayr S, O'Donoghue N, Guttman A, Rudd PM: Ultra performance liquid chromatographic profiling of serum N-glycans for fast and efficient identification of cancer associated alterations in glycosylation. Anal Chem. 2010, 82: 10208-10215. 10.1021/ac102860w.PubMed Bones J, Mittermayr S, O'Donoghue N, Guttman A, Rudd PM: Ultra performance liquid chromatographic profiling of serum N-glycans for fast and efficient identification of cancer associated alterations in glycosylation. Anal Chem. 2010, 82: 10208-10215. 10.1021/ac102860w.PubMed
81.
go back to reference Zauner G, Koeleman CA, Deelder AM, Wuhrer M: Protein glycosylation analysis by HILIC-LC-MS of proteinase K-generated N- and O-glycopeptides. J Sep Sci. 2010, 33: 903-910. 10.1002/jssc.200900850.PubMed Zauner G, Koeleman CA, Deelder AM, Wuhrer M: Protein glycosylation analysis by HILIC-LC-MS of proteinase K-generated N- and O-glycopeptides. J Sep Sci. 2010, 33: 903-910. 10.1002/jssc.200900850.PubMed
82.
go back to reference Li B, An HJ, Kirmiz C, Lebrilla CB, Lam KS, Miyamoto S: Glycoproteomic analyses of ovarian cancer cell lines and sera from ovarian cancer patients show distinct glycosylation changes in individual proteins. J Proteome Res. 2008, 7: 3776-3788. 10.1021/pr800297u.PubMed Li B, An HJ, Kirmiz C, Lebrilla CB, Lam KS, Miyamoto S: Glycoproteomic analyses of ovarian cancer cell lines and sera from ovarian cancer patients show distinct glycosylation changes in individual proteins. J Proteome Res. 2008, 7: 3776-3788. 10.1021/pr800297u.PubMed
83.
go back to reference Ruhaak LR, Miyamoto S, Kelly K, Lebrilla CB: N-Glycan profiling of dried blood spots. Anal Chem. 2012, 84: 396-402. 10.1021/ac202775t.PubMed Ruhaak LR, Miyamoto S, Kelly K, Lebrilla CB: N-Glycan profiling of dried blood spots. Anal Chem. 2012, 84: 396-402. 10.1021/ac202775t.PubMed
84.
go back to reference Alley WR, Madera M, Mechref Y, Novotny MV: Chip-based reversed-phase liquid chromatography-mass spectrometry of permethylated N-linked glycans: a potential methodology for cancer-biomarker discovery. Anal Chem. 2011, 82: 5095-5106. Alley WR, Madera M, Mechref Y, Novotny MV: Chip-based reversed-phase liquid chromatography-mass spectrometry of permethylated N-linked glycans: a potential methodology for cancer-biomarker discovery. Anal Chem. 2011, 82: 5095-5106.
85.
go back to reference Mechref Y: Analysis of glycans derived from glycoconjugates by capillary electrophoresis-mass spectrometry. Electrophoresis. 2011, 32: 3467-3481. 10.1002/elps.201100342.PubMedPubMedCentral Mechref Y: Analysis of glycans derived from glycoconjugates by capillary electrophoresis-mass spectrometry. Electrophoresis. 2011, 32: 3467-3481. 10.1002/elps.201100342.PubMedPubMedCentral
86.
go back to reference Kita Y, Miura Y, Furukawa J, Nakano M, Shinohara Y, Ohno M, Takimoto A, Nishimura S: Quantitative glycomics of human whole serum glycoproteins based on the standardized protocol for liberating N-glycans. Mol Cell Proteomics. 2007, 6: 1437-1445. 10.1074/mcp.T600063-MCP200.PubMed Kita Y, Miura Y, Furukawa J, Nakano M, Shinohara Y, Ohno M, Takimoto A, Nishimura S: Quantitative glycomics of human whole serum glycoproteins based on the standardized protocol for liberating N-glycans. Mol Cell Proteomics. 2007, 6: 1437-1445. 10.1074/mcp.T600063-MCP200.PubMed
87.
go back to reference Kyselova Z, Mechref Y, Kang P, Goetz JA, Dobrolecki LE, Sledge GW, Schnaper L, Hickey RJ, Malkas LH, Novotny MV: Breast cancer diagnosis and prognosis through quantitative measurements of serum glycan profiles. Clin Chem. 2008, 54: 1166-1175. 10.1373/clinchem.2007.087148.PubMed Kyselova Z, Mechref Y, Kang P, Goetz JA, Dobrolecki LE, Sledge GW, Schnaper L, Hickey RJ, Malkas LH, Novotny MV: Breast cancer diagnosis and prognosis through quantitative measurements of serum glycan profiles. Clin Chem. 2008, 54: 1166-1175. 10.1373/clinchem.2007.087148.PubMed
88.
go back to reference Imre T, Kremmer T, Heberger K, Molnar-Szollosi E, Ludanyi K, Pocsfalvi G, Malorni A, Drahos L, Vekey K: Mass spectrometric and linear discriminant analysis of N-glycans of human serum alpha-1-acid glycoprotein in cancer patients and healthy individuals. J Proteomics. 2008, 71: 186-197. 10.1016/j.jprot.2008.04.005.PubMed Imre T, Kremmer T, Heberger K, Molnar-Szollosi E, Ludanyi K, Pocsfalvi G, Malorni A, Drahos L, Vekey K: Mass spectrometric and linear discriminant analysis of N-glycans of human serum alpha-1-acid glycoprotein in cancer patients and healthy individuals. J Proteomics. 2008, 71: 186-197. 10.1016/j.jprot.2008.04.005.PubMed
89.
go back to reference Tsai HY, Boonyapranai K, Sriyam S, Yu CJ, Wu SW, Khoo KH, Phutrakul S, Chen ST: Glycoproteomics analysis to identify a glycoform on haptoglobin associated with lung cancer. Proteomics. 2011, 11: 2162-2170. 10.1002/pmic.201000319.PubMed Tsai HY, Boonyapranai K, Sriyam S, Yu CJ, Wu SW, Khoo KH, Phutrakul S, Chen ST: Glycoproteomics analysis to identify a glycoform on haptoglobin associated with lung cancer. Proteomics. 2011, 11: 2162-2170. 10.1002/pmic.201000319.PubMed
90.
go back to reference Zhang S, Shu H, Luo K, Kang X, Zhang Y, Lu H, Liu Y: N-linked glycan changes of serum haptoglobin beta chain in liver disease patients. Mol Biosyst. 2011, 7: 1621-1628. 10.1039/c1mb05020f.PubMed Zhang S, Shu H, Luo K, Kang X, Zhang Y, Lu H, Liu Y: N-linked glycan changes of serum haptoglobin beta chain in liver disease patients. Mol Biosyst. 2011, 7: 1621-1628. 10.1039/c1mb05020f.PubMed
91.
go back to reference Drabovich AP, Diamandis EP: Combinatorial peptide libraries facilitate development of multiple reaction monitoring assays for low-abundance proteins. J Proteome Res. 2010, 9: 1236-1245. 10.1021/pr900729g.PubMed Drabovich AP, Diamandis EP: Combinatorial peptide libraries facilitate development of multiple reaction monitoring assays for low-abundance proteins. J Proteome Res. 2010, 9: 1236-1245. 10.1021/pr900729g.PubMed
92.
go back to reference Keshishian H, Addona T, Burgess M, Kuhn E, Carr SA: Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol Cell Proteomics. 2007, 6: 2212-2229. 10.1074/mcp.M700354-MCP200.PubMedPubMedCentral Keshishian H, Addona T, Burgess M, Kuhn E, Carr SA: Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol Cell Proteomics. 2007, 6: 2212-2229. 10.1074/mcp.M700354-MCP200.PubMedPubMedCentral
93.
go back to reference Keshishian H, Addona T, Burgess M, Mani DR, Shi X, Kuhn E, Sabatine MS, Gerszten RE, Carr SA: Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution. Mol Cell Proteomics. 2009, 8: 2339-2349. 10.1074/mcp.M900140-MCP200.PubMedPubMedCentral Keshishian H, Addona T, Burgess M, Mani DR, Shi X, Kuhn E, Sabatine MS, Gerszten RE, Carr SA: Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution. Mol Cell Proteomics. 2009, 8: 2339-2349. 10.1074/mcp.M900140-MCP200.PubMedPubMedCentral
94.
go back to reference Kulasingam V, Smith CR, Batruch I, Buckler A, Jeffery DA, Diamandis EP: "Product ion monitoring" assay for prostate-specific antigen in serum using a linear ion-trap. J Proteome Res. 2008, 7: 640-647. 10.1021/pr7005999.PubMed Kulasingam V, Smith CR, Batruch I, Buckler A, Jeffery DA, Diamandis EP: "Product ion monitoring" assay for prostate-specific antigen in serum using a linear ion-trap. J Proteome Res. 2008, 7: 640-647. 10.1021/pr7005999.PubMed
95.
go back to reference Anderson NL, Anderson NG, Haines LR, Hardie DB, Olafson RW, Pearson TW: Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J Proteome Res. 2004, 3: 235-244. 10.1021/pr034086h.PubMed Anderson NL, Anderson NG, Haines LR, Hardie DB, Olafson RW, Pearson TW: Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J Proteome Res. 2004, 3: 235-244. 10.1021/pr034086h.PubMed
96.
go back to reference Anderson NL, Jackson A, Smith D, Hardie D, Borchers C, Pearson TW: SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device. Mol Cell Proteomics. 2009, 8: 995-1005. 10.1074/mcp.M800446-MCP200.PubMedPubMedCentral Anderson NL, Jackson A, Smith D, Hardie D, Borchers C, Pearson TW: SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device. Mol Cell Proteomics. 2009, 8: 995-1005. 10.1074/mcp.M800446-MCP200.PubMedPubMedCentral
97.
go back to reference Kulasingam V, Smith CR, Batruch I, Diamandis EP: Immuno-mass spectrometry: quantification of low-abundance proteins in biological fluids. Methods Mol Biol. 2011, 728: 207-218. 10.1007/978-1-61779-068-3_13.PubMed Kulasingam V, Smith CR, Batruch I, Diamandis EP: Immuno-mass spectrometry: quantification of low-abundance proteins in biological fluids. Methods Mol Biol. 2011, 728: 207-218. 10.1007/978-1-61779-068-3_13.PubMed
98.
go back to reference Whiteaker JR, Zhao L, Anderson L, Paulovich AG: An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Mol Cell Proteomics. 2010, 9: 184-196. 10.1074/mcp.M900254-MCP200.PubMed Whiteaker JR, Zhao L, Anderson L, Paulovich AG: An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Mol Cell Proteomics. 2010, 9: 184-196. 10.1074/mcp.M900254-MCP200.PubMed
99.
go back to reference Zhao L, Whiteaker JR, Pope ME, Kuhn E, Jackson A, Anderson NL, Pearson TW, Carr SA, Paulovich AG: Quantification of proteins using peptide immunoaffinity enrichment coupled with mass spectrometry. J Vis Exp. 2011 Zhao L, Whiteaker JR, Pope ME, Kuhn E, Jackson A, Anderson NL, Pearson TW, Carr SA, Paulovich AG: Quantification of proteins using peptide immunoaffinity enrichment coupled with mass spectrometry. J Vis Exp. 2011
100.
go back to reference Ahn YH, Kim YS, Ji ES, Lee JY, Jung JA, Ko JH, Yoo JS: Comparative quantitation of aberrant glycoforms by lectin-based glycoprotein enrichment coupled with multiple-reaction monitoring mass spectrometry. Anal Chem. 2010, 82: 4441-4447. 10.1021/ac1001965.PubMed Ahn YH, Kim YS, Ji ES, Lee JY, Jung JA, Ko JH, Yoo JS: Comparative quantitation of aberrant glycoforms by lectin-based glycoprotein enrichment coupled with multiple-reaction monitoring mass spectrometry. Anal Chem. 2010, 82: 4441-4447. 10.1021/ac1001965.PubMed
101.
go back to reference Ahn YH, Lee JY, Kim YS, Ko JH, Yoo JS: Quantitative analysis of an aberrant glycoform of TIMP1 from colon cancer serum by L-PHA-enrichment and SISCAPA with MRM mass spectrometry. J Proteome Res. 2009, 8: 4216-4224. 10.1021/pr900269s.PubMed Ahn YH, Lee JY, Kim YS, Ko JH, Yoo JS: Quantitative analysis of an aberrant glycoform of TIMP1 from colon cancer serum by L-PHA-enrichment and SISCAPA with MRM mass spectrometry. J Proteome Res. 2009, 8: 4216-4224. 10.1021/pr900269s.PubMed
102.
go back to reference Ahn YH, Shin PM, Oh NR, Park GW, Kim H, Yoo JS: A lectin-coupled, targeted proteomic mass spectrometry (MRM MS) platform for identification of multiple liver cancer biomarkers in human plasma. J Proteomics. 2012, 75: 5507-5515. 10.1016/j.jprot.2012.06.027.PubMed Ahn YH, Shin PM, Oh NR, Park GW, Kim H, Yoo JS: A lectin-coupled, targeted proteomic mass spectrometry (MRM MS) platform for identification of multiple liver cancer biomarkers in human plasma. J Proteomics. 2012, 75: 5507-5515. 10.1016/j.jprot.2012.06.027.PubMed
103.
go back to reference Li Y, Tian Y, Rezai T, Prakash A, Lopez MF, Chan DW, Zhang H: Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues. Anal Chem. 2011, 83: 240-245. 10.1021/ac102319g.PubMed Li Y, Tian Y, Rezai T, Prakash A, Lopez MF, Chan DW, Zhang H: Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues. Anal Chem. 2011, 83: 240-245. 10.1021/ac102319g.PubMed
104.
go back to reference Song E, Pyreddy S, Mechref Y: Quantification of glycopeptides by multiple reaction monitoring liquid chromatography/tandem mass spectrometry. Rapid Commun Mass Spectrom. 2012, 26: 1941-1954. 10.1002/rcm.6290.PubMedPubMedCentral Song E, Pyreddy S, Mechref Y: Quantification of glycopeptides by multiple reaction monitoring liquid chromatography/tandem mass spectrometry. Rapid Commun Mass Spectrom. 2012, 26: 1941-1954. 10.1002/rcm.6290.PubMedPubMedCentral
105.
go back to reference Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N: Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycobiology. 2007, 17: 411-422. 10.1093/glycob/cwl086.PubMed Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N: Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycobiology. 2007, 17: 411-422. 10.1093/glycob/cwl086.PubMed
106.
go back to reference Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. J Proteome Res. 2009, 8: 651-661. 10.1021/pr8008012.PubMed Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. J Proteome Res. 2009, 8: 651-661. 10.1021/pr8008012.PubMed
107.
go back to reference Cutalo JM, Deterding LJ, Tomer KB: Characterization of glycopeptides from HIV-I(SF2) gp120 by liquid chromatography mass spectrometry. J Am Soc Mass Spectrom. 2004, 15: 1545-1555. 10.1016/j.jasms.2004.07.008.PubMedPubMedCentral Cutalo JM, Deterding LJ, Tomer KB: Characterization of glycopeptides from HIV-I(SF2) gp120 by liquid chromatography mass spectrometry. J Am Soc Mass Spectrom. 2004, 15: 1545-1555. 10.1016/j.jasms.2004.07.008.PubMedPubMedCentral
108.
go back to reference Leymarie N, Zaia J: Effective use of mass spectrometry for glycan and glycopeptide structural analysis. Anal Chem. 2012, 84: 3040-3048. 10.1021/ac3000573.PubMedPubMedCentral Leymarie N, Zaia J: Effective use of mass spectrometry for glycan and glycopeptide structural analysis. Anal Chem. 2012, 84: 3040-3048. 10.1021/ac3000573.PubMedPubMedCentral
109.
go back to reference Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S: Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay. Mol Cell Proteomics. 2010, 9: 2354-2368. 10.1074/mcp.M110.000430.PubMedPubMedCentral Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S: Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay. Mol Cell Proteomics. 2010, 9: 2354-2368. 10.1074/mcp.M110.000430.PubMedPubMedCentral
110.
go back to reference Rebecchi KR, Wenke JL, Go EP, Desaire H: Label-free quantitation: a new glycoproteomics approach. J Am Soc Mass Spectrom. 2009, 20: 1048-1059. 10.1016/j.jasms.2009.01.013.PubMed Rebecchi KR, Wenke JL, Go EP, Desaire H: Label-free quantitation: a new glycoproteomics approach. J Am Soc Mass Spectrom. 2009, 20: 1048-1059. 10.1016/j.jasms.2009.01.013.PubMed
111.
go back to reference Maresca B, Cigliano L, Corsaro MM, Pieretti G, Natale M, Bucci EM, Dal Piaz F, Balato N, Nino M, Ayala F, Abrescia P: Quantitative determination of haptoglobin glycoform variants in psoriasis. Biol Chem. 2010, 391: 1429-1439.PubMed Maresca B, Cigliano L, Corsaro MM, Pieretti G, Natale M, Bucci EM, Dal Piaz F, Balato N, Nino M, Ayala F, Abrescia P: Quantitative determination of haptoglobin glycoform variants in psoriasis. Biol Chem. 2010, 391: 1429-1439.PubMed
112.
go back to reference Nakano M, Nakagawa T, Ito T, Kitada T, Hijioka T, Kasahara A, Tajiri M, Wada Y, Taniguchi N, Miyoshi E: Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: a novel approach for the development of tumor markers. Int J Cancer. 2008, 122: 2301-2309. 10.1002/ijc.23364.PubMed Nakano M, Nakagawa T, Ito T, Kitada T, Hijioka T, Kasahara A, Tajiri M, Wada Y, Taniguchi N, Miyoshi E: Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: a novel approach for the development of tumor markers. Int J Cancer. 2008, 122: 2301-2309. 10.1002/ijc.23364.PubMed
113.
go back to reference Ivancic MM, Gadgil HS, Halsall HB, Treuheit MJ: LC/MS analysis of complex multiglycosylated human alpha(1)-acid glycoprotein as a model for developing identification and quantitation methods for intact glycopeptide analysis. Anal Biochem. 2010, 400: 25-32. 10.1016/j.ab.2010.01.026.PubMed Ivancic MM, Gadgil HS, Halsall HB, Treuheit MJ: LC/MS analysis of complex multiglycosylated human alpha(1)-acid glycoprotein as a model for developing identification and quantitation methods for intact glycopeptide analysis. Anal Biochem. 2010, 400: 25-32. 10.1016/j.ab.2010.01.026.PubMed
114.
go back to reference Zhao Y, Jia W, Wang J, Ying W, Zhang Y, Qian X: Fragmentation and site-specific quantification of core fucosylated glycoprotein by multiple reaction monitoring-mass spectrometry. Anal Chem. 2011, 83: 8802-8809. 10.1021/ac201676a.PubMed Zhao Y, Jia W, Wang J, Ying W, Zhang Y, Qian X: Fragmentation and site-specific quantification of core fucosylated glycoprotein by multiple reaction monitoring-mass spectrometry. Anal Chem. 2011, 83: 8802-8809. 10.1021/ac201676a.PubMed
115.
go back to reference Lopez MF, Rezai T, Sarracino DA, Prakash A, Krastins B, Athanas M, Singh RJ, Barnidge DR, Oran P, Borges C, Nelson RW: Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants. Clin Chem. 2010, 56: 281-290. 10.1373/clinchem.2009.137323.PubMed Lopez MF, Rezai T, Sarracino DA, Prakash A, Krastins B, Athanas M, Singh RJ, Barnidge DR, Oran P, Borges C, Nelson RW: Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants. Clin Chem. 2010, 56: 281-290. 10.1373/clinchem.2009.137323.PubMed
116.
go back to reference Hua S, Lebrilla C, An HJ: Application of nano-LC-based glycomics towards biomarker discovery. Bioanalysis. 2011, 3: 2573-2585. 10.4155/bio.11.263.PubMed Hua S, Lebrilla C, An HJ: Application of nano-LC-based glycomics towards biomarker discovery. Bioanalysis. 2011, 3: 2573-2585. 10.4155/bio.11.263.PubMed
117.
go back to reference Ikegami T, Tomomatsu K, Takubo H, Horie K, Tanaka N: Separation efficiencies in hydrophilic interaction chromatography. J Chromatogr A. 2008, 1184: 474-503. 10.1016/j.chroma.2008.01.075.PubMed Ikegami T, Tomomatsu K, Takubo H, Horie K, Tanaka N: Separation efficiencies in hydrophilic interaction chromatography. J Chromatogr A. 2008, 1184: 474-503. 10.1016/j.chroma.2008.01.075.PubMed
118.
go back to reference Zauner G, Deelder AM, Wuhrer M: Recent advances in hydrophilic interaction liquid chromatography (HILIC) for structural glycomics. Electrophoresis. 2011, 32: 3456-3466. 10.1002/elps.201100247.PubMed Zauner G, Deelder AM, Wuhrer M: Recent advances in hydrophilic interaction liquid chromatography (HILIC) for structural glycomics. Electrophoresis. 2011, 32: 3456-3466. 10.1002/elps.201100247.PubMed
119.
go back to reference Manimala JC, Li Z, Jain A, VedBrat S, Gildersleeve JC: Carbohydrate array analysis of anti-Tn antibodies and lectins reveals unexpected specificities: implications for diagnostic and vaccine development. Chembiochem. 2005, 6: 2229-2241. 10.1002/cbic.200500165.PubMed Manimala JC, Li Z, Jain A, VedBrat S, Gildersleeve JC: Carbohydrate array analysis of anti-Tn antibodies and lectins reveals unexpected specificities: implications for diagnostic and vaccine development. Chembiochem. 2005, 6: 2229-2241. 10.1002/cbic.200500165.PubMed
120.
go back to reference Manimala JC, Roach TA, Li Z, Gildersleeve JC: High-throughput carbohydrate microarray profiling of 27 antibodies demonstrates widespread specificity problems. Glycobiology. 2007, 17: 17C-23C. 10.1093/glycob/cwm047.PubMed Manimala JC, Roach TA, Li Z, Gildersleeve JC: High-throughput carbohydrate microarray profiling of 27 antibodies demonstrates widespread specificity problems. Glycobiology. 2007, 17: 17C-23C. 10.1093/glycob/cwm047.PubMed
121.
go back to reference Magnani JL, Nilsson B, Brockhaus M, Zopf D, Steplewski Z, Koprowski H, Ginsburg V: A monoclonal antibody-defined antigen associated with gastrointestinal cancer is a ganglioside containing sialylated lacto-N-fucopentaose II. J Biol Chem. 1982, 257: 14365-14369.PubMed Magnani JL, Nilsson B, Brockhaus M, Zopf D, Steplewski Z, Koprowski H, Ginsburg V: A monoclonal antibody-defined antigen associated with gastrointestinal cancer is a ganglioside containing sialylated lacto-N-fucopentaose II. J Biol Chem. 1982, 257: 14365-14369.PubMed
122.
go back to reference Safi F, Schlosser W, Kolb G, Beger HG: Diagnostic value of CA 19-9 in patients with pancreatic cancer and nonspecific gastrointestinal symptoms. J Gastrointest Surg. 1997, 1: 106-112. 10.1016/S1091-255X(97)80097-2.PubMed Safi F, Schlosser W, Kolb G, Beger HG: Diagnostic value of CA 19-9 in patients with pancreatic cancer and nonspecific gastrointestinal symptoms. J Gastrointest Surg. 1997, 1: 106-112. 10.1016/S1091-255X(97)80097-2.PubMed
123.
go back to reference Duffy MJ, Evoy D, McDermott EW: CA 15-3: uses and limitation as a biomarker for breast cancer. Clin Chim Acta. 2010, 411: 1869-1874. 10.1016/j.cca.2010.08.039.PubMed Duffy MJ, Evoy D, McDermott EW: CA 15-3: uses and limitation as a biomarker for breast cancer. Clin Chim Acta. 2010, 411: 1869-1874. 10.1016/j.cca.2010.08.039.PubMed
124.
go back to reference von Mensdorff-Pouilly S, Gourevitch MM, Kenemans P, Verstraeten AA, van Kamp GJ, Kok A, van Uffelen K, Snijdewint FG, Paul MA, Meijer S, Hilgers J: An enzyme-linked immunosorbent assay for the measurement of circulating antibodies to polymorphic epithelial mucin (MUC1). Tumour Biol. 1998, 19: 186-195. 10.1159/000030006.PubMed von Mensdorff-Pouilly S, Gourevitch MM, Kenemans P, Verstraeten AA, van Kamp GJ, Kok A, van Uffelen K, Snijdewint FG, Paul MA, Meijer S, Hilgers J: An enzyme-linked immunosorbent assay for the measurement of circulating antibodies to polymorphic epithelial mucin (MUC1). Tumour Biol. 1998, 19: 186-195. 10.1159/000030006.PubMed
125.
go back to reference Babovic-Vuksanovic D, O'Brien JF: Laboratory diagnosis of congenital disorders of glycosylation type I by analysis of transferrin glycoforms. Mol Diagn Ther. 2007, 11: 303-311. 10.1007/BF03256251.PubMed Babovic-Vuksanovic D, O'Brien JF: Laboratory diagnosis of congenital disorders of glycosylation type I by analysis of transferrin glycoforms. Mol Diagn Ther. 2007, 11: 303-311. 10.1007/BF03256251.PubMed
126.
go back to reference Helander A, Bergstrom J, Freeze HH: Testing for congenital disorders of glycosylation by HPLC measurement of serum transferrin glycoforms. Clin Chem. 2004, 50: 954-958. 10.1373/clinchem.2003.029629.PubMed Helander A, Bergstrom J, Freeze HH: Testing for congenital disorders of glycosylation by HPLC measurement of serum transferrin glycoforms. Clin Chem. 2004, 50: 954-958. 10.1373/clinchem.2003.029629.PubMed
127.
go back to reference Kuzmanov U, Smith CR, Batruch I, Soosaipillai A, Diamandis A, Diamandis EP: Separation of kallikrein 6 glycoprotein subpopulations in biological fluids by anion-exchange chromatography coupled to ELISA and identification by mass spectrometry. Proteomics. 2012, 12: 799-809. 10.1002/pmic.201100371.PubMed Kuzmanov U, Smith CR, Batruch I, Soosaipillai A, Diamandis A, Diamandis EP: Separation of kallikrein 6 glycoprotein subpopulations in biological fluids by anion-exchange chromatography coupled to ELISA and identification by mass spectrometry. Proteomics. 2012, 12: 799-809. 10.1002/pmic.201100371.PubMed
128.
go back to reference Gullfot F, Tan TC, von Schantz L, Karlsson EN, Ohlin M, Brumer H, Divne C: The crystal structure of XG-34, an evolved xyloglucan-specific carbohydrate-binding module. Proteins. 2010, 78: 785-789.PubMed Gullfot F, Tan TC, von Schantz L, Karlsson EN, Ohlin M, Brumer H, Divne C: The crystal structure of XG-34, an evolved xyloglucan-specific carbohydrate-binding module. Proteins. 2010, 78: 785-789.PubMed
129.
go back to reference Gunnarsson LC, Dexlin L, Karlsson EN, Holst O, Ohlin M: Evolution of a carbohydrate binding module into a protein-specific binder. Biomol Eng. 2006, 23: 111-117. 10.1016/j.bioeng.2005.12.002.PubMed Gunnarsson LC, Dexlin L, Karlsson EN, Holst O, Ohlin M: Evolution of a carbohydrate binding module into a protein-specific binder. Biomol Eng. 2006, 23: 111-117. 10.1016/j.bioeng.2005.12.002.PubMed
130.
go back to reference Matsubara T, Iida M, Tsumuraya T, Fujii I, Sato T: Selection of a carbohydrate-binding domain with a helix-loop-helix structure. Biochemistry. 2008, 47: 6745-6751. 10.1021/bi8000837.PubMed Matsubara T, Iida M, Tsumuraya T, Fujii I, Sato T: Selection of a carbohydrate-binding domain with a helix-loop-helix structure. Biochemistry. 2008, 47: 6745-6751. 10.1021/bi8000837.PubMed
131.
go back to reference Matsubara T, Sumi M, Kubota H, Taki T, Okahata Y, Sato T: Inhibition of influenza virus infections by sialylgalactose-binding peptides selected from a phage library. J Med Chem. 2009, 52: 4247-4256. 10.1021/jm801570y.PubMed Matsubara T, Sumi M, Kubota H, Taki T, Okahata Y, Sato T: Inhibition of influenza virus infections by sialylgalactose-binding peptides selected from a phage library. J Med Chem. 2009, 52: 4247-4256. 10.1021/jm801570y.PubMed
132.
go back to reference von Schantz L, Gullfot F, Scheer S, Filonova L, Cicortas Gunnarsson L, Flint JE, Daniel G, Nordberg-Karlsson E, Brumer H, Ohlin M: Affinity maturation generates greatly improved xyloglucan-specific carbohydrate binding modules. BMC Biotechnol. 2009, 9: 92-10.1186/1472-6750-9-92.PubMedPubMedCentral von Schantz L, Gullfot F, Scheer S, Filonova L, Cicortas Gunnarsson L, Flint JE, Daniel G, Nordberg-Karlsson E, Brumer H, Ohlin M: Affinity maturation generates greatly improved xyloglucan-specific carbohydrate binding modules. BMC Biotechnol. 2009, 9: 92-10.1186/1472-6750-9-92.PubMedPubMedCentral
133.
go back to reference Boese BJ, Breaker RR: In vitro selection and characterization of cellulose-binding DNA aptamers. Nucleic Acids Res. 2007, 35: 6378-6388. 10.1093/nar/gkm708.PubMedPubMedCentral Boese BJ, Breaker RR: In vitro selection and characterization of cellulose-binding DNA aptamers. Nucleic Acids Res. 2007, 35: 6378-6388. 10.1093/nar/gkm708.PubMedPubMedCentral
134.
go back to reference Boese BJ, Corbino K, Breaker RR: In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification. Nucleosides Nucleotides Nucleic Acids. 2008, 27: 949-966. 10.1080/15257770802257903.PubMed Boese BJ, Corbino K, Breaker RR: In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification. Nucleosides Nucleotides Nucleic Acids. 2008, 27: 949-966. 10.1080/15257770802257903.PubMed
135.
go back to reference Ferreira CS, Cheung MC, Missailidis S, Bisland S, Gariepy J: Phototoxic aptamers selectively enter and kill epithelial cancer cells. Nucleic Acids Res. 2009, 37: 866-876. 10.1093/nar/gkn967.PubMed Ferreira CS, Cheung MC, Missailidis S, Bisland S, Gariepy J: Phototoxic aptamers selectively enter and kill epithelial cancer cells. Nucleic Acids Res. 2009, 37: 866-876. 10.1093/nar/gkn967.PubMed
136.
go back to reference Li M, Lin N, Huang Z, Du L, Altier C, Fang H, Wang B: Selecting aptamers for a glycoprotein through the incorporation of the boronic acid moiety. J Am Chem Soc. 2008, 130: 12636-12638. 10.1021/ja801510d.PubMedPubMedCentral Li M, Lin N, Huang Z, Du L, Altier C, Fang H, Wang B: Selecting aptamers for a glycoprotein through the incorporation of the boronic acid moiety. J Am Chem Soc. 2008, 130: 12636-12638. 10.1021/ja801510d.PubMedPubMedCentral
137.
go back to reference Rose CM, Hayes MJ, Stettler GR, Hickey SF, Axelrod TM, Giustini NP, Suljak SW: Capillary electrophoretic development of aptamers for a glycosylated VEGF peptide fragment. Analyst. 2010, 135: 2945-2951. 10.1039/c0an00445f.PubMedPubMedCentral Rose CM, Hayes MJ, Stettler GR, Hickey SF, Axelrod TM, Giustini NP, Suljak SW: Capillary electrophoretic development of aptamers for a glycosylated VEGF peptide fragment. Analyst. 2010, 135: 2945-2951. 10.1039/c0an00445f.PubMedPubMedCentral
138.
go back to reference Gerlach JQ, Cunningham S, Kane M, Joshi L: Glycobiomimics and glycobiosensors. Biochem Soc Trans. 2010, 38: 1333-1336. 10.1042/BST0381333.PubMed Gerlach JQ, Cunningham S, Kane M, Joshi L: Glycobiomimics and glycobiosensors. Biochem Soc Trans. 2010, 38: 1333-1336. 10.1042/BST0381333.PubMed
139.
go back to reference Jelinek R, Kolusheva S: Carbohydrate biosensors. Chem Rev. 2004, 104: 5987-6015. 10.1021/cr0300284.PubMed Jelinek R, Kolusheva S: Carbohydrate biosensors. Chem Rev. 2004, 104: 5987-6015. 10.1021/cr0300284.PubMed
140.
go back to reference Cheng W, Ding L, Lei J, Ding S, Ju H: Effective cell capture with tetrapeptide-functionalized carbon nanotubes and dual signal amplification for cytosensing and evaluation of cell surface carbohydrate. Anal Chem. 2008, 80: 3867-3872. 10.1021/ac800199t.PubMed Cheng W, Ding L, Lei J, Ding S, Ju H: Effective cell capture with tetrapeptide-functionalized carbon nanotubes and dual signal amplification for cytosensing and evaluation of cell surface carbohydrate. Anal Chem. 2008, 80: 3867-3872. 10.1021/ac800199t.PubMed
141.
go back to reference Ding L, Cheng W, Wang X, Ding S, Ju H: Carbohydrate monolayer strategy for electrochemical assay of cell surface carbohydrate. J Am Chem Soc. 2008, 130: 7224-7225. 10.1021/ja801468b.PubMed Ding L, Cheng W, Wang X, Ding S, Ju H: Carbohydrate monolayer strategy for electrochemical assay of cell surface carbohydrate. J Am Chem Soc. 2008, 130: 7224-7225. 10.1021/ja801468b.PubMed
142.
go back to reference La Belle JT, Gerlach JQ, Svarovsky S, Joshi L: Label-free impedimetric detection of glycan-lectin interactions. Anal Chem. 2007, 79: 6959-6964. 10.1021/ac070651e.PubMed La Belle JT, Gerlach JQ, Svarovsky S, Joshi L: Label-free impedimetric detection of glycan-lectin interactions. Anal Chem. 2007, 79: 6959-6964. 10.1021/ac070651e.PubMed
143.
go back to reference Oliveira MD, Correia MT, Diniz FB: Concanavalin A and polyvinyl butyral use as a potential dengue electrochemical biosensor. Biosens Bioelectron. 2009, 25: 728-732. 10.1016/j.bios.2009.08.009.PubMed Oliveira MD, Correia MT, Diniz FB: Concanavalin A and polyvinyl butyral use as a potential dengue electrochemical biosensor. Biosens Bioelectron. 2009, 25: 728-732. 10.1016/j.bios.2009.08.009.PubMed
144.
go back to reference Phillips MD, Fyles TM, Barwell NP, James TD: Carbohydrate sensing using a fluorescent molecular tweezer. Chem Commun (Camb). 2009, 6557-6559. Phillips MD, Fyles TM, Barwell NP, James TD: Carbohydrate sensing using a fluorescent molecular tweezer. Chem Commun (Camb). 2009, 6557-6559.
145.
go back to reference Dai Z, Kawde AN, Xiang Y, La Belle JT, Gerlach J, Bhavanandan VP, Joshi L, Wang J: Nanoparticle-based sensing of glycan-lectin interactions. J Am Chem Soc. 2006, 128: 10018-10019. 10.1021/ja063565p.PubMed Dai Z, Kawde AN, Xiang Y, La Belle JT, Gerlach J, Bhavanandan VP, Joshi L, Wang J: Nanoparticle-based sensing of glycan-lectin interactions. J Am Chem Soc. 2006, 128: 10018-10019. 10.1021/ja063565p.PubMed
146.
go back to reference Pei Z, Anderson H, Aastrup T, Ramstrom O: Study of real-time lectin-carbohydrate interactions on the surface of a quartz crystal microbalance. Biosens Bioelectron. 2005, 21: 60-66. 10.1016/j.bios.2004.10.006.PubMed Pei Z, Anderson H, Aastrup T, Ramstrom O: Study of real-time lectin-carbohydrate interactions on the surface of a quartz crystal microbalance. Biosens Bioelectron. 2005, 21: 60-66. 10.1016/j.bios.2004.10.006.PubMed
147.
go back to reference Shen Z, Huang M, Xiao C, Zhang Y, Zeng X, Wang PG: Nonlabeled quartz crystal microbalance biosensor for bacterial detection using carbohydrate and lectin recognitions. Anal Chem. 2007, 79: 2312-2319. 10.1021/ac061986j.PubMedPubMedCentral Shen Z, Huang M, Xiao C, Zhang Y, Zeng X, Wang PG: Nonlabeled quartz crystal microbalance biosensor for bacterial detection using carbohydrate and lectin recognitions. Anal Chem. 2007, 79: 2312-2319. 10.1021/ac061986j.PubMedPubMedCentral
148.
go back to reference Astrom E, Ohlson S: Detection of weakly interacting anti-carbohydrate scFv phages using surface plasmon resonance. J Mol Recognit. 2006, 19: 282-286. 10.1002/jmr.786.PubMed Astrom E, Ohlson S: Detection of weakly interacting anti-carbohydrate scFv phages using surface plasmon resonance. J Mol Recognit. 2006, 19: 282-286. 10.1002/jmr.786.PubMed
149.
go back to reference Foley KJ, Forzani ES, Joshi L, Tao N: Detection of lectin-glycan interaction using high resolution surface plasmon resonance. Analyst. 2008, 133: 744-746. 10.1039/b719321a.PubMed Foley KJ, Forzani ES, Joshi L, Tao N: Detection of lectin-glycan interaction using high resolution surface plasmon resonance. Analyst. 2008, 133: 744-746. 10.1039/b719321a.PubMed
150.
go back to reference Mercey E, Sadir R, Maillart E, Roget A, Baleux F, Lortat-Jacob H, Livache T: Polypyrrole oligosaccharide array and surface plasmon resonance imaging for the measurement of glycosaminoglycan binding interactions. Anal Chem. 2008, 80: 3476-3482. 10.1021/ac800226k.PubMed Mercey E, Sadir R, Maillart E, Roget A, Baleux F, Lortat-Jacob H, Livache T: Polypyrrole oligosaccharide array and surface plasmon resonance imaging for the measurement of glycosaminoglycan binding interactions. Anal Chem. 2008, 80: 3476-3482. 10.1021/ac800226k.PubMed
151.
go back to reference Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, Su AI: BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol. 2009, 10: R130-10.1186/gb-2009-10-11-r130.PubMedPubMedCentral Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, Su AI: BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol. 2009, 10: R130-10.1186/gb-2009-10-11-r130.PubMedPubMedCentral
152.
go back to reference Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB: A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA. 2004, 101: 6062-6067. 10.1073/pnas.0400782101.PubMedPubMedCentral Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB: A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA. 2004, 101: 6062-6067. 10.1073/pnas.0400782101.PubMedPubMedCentral
153.
go back to reference Abelev GI: Production of embryonal alpha-globulin by transplantable mouse hepatomas. Transplantation. 1963, 1: 174-180. 10.1097/00007890-196301020-00004.PubMed Abelev GI: Production of embryonal alpha-globulin by transplantable mouse hepatomas. Transplantation. 1963, 1: 174-180. 10.1097/00007890-196301020-00004.PubMed
154.
go back to reference Tumor markers: physiology, pathobiology, technology, and clinical applications. 2002, Washington, DC: AACC Press Tumor markers: physiology, pathobiology, technology, and clinical applications. 2002, Washington, DC: AACC Press
155.
go back to reference Bagshawe KD: Markers in gynaecological cancer. Arch Gynecol. 1980, 229: 303-310. 10.1007/BF02108581.PubMed Bagshawe KD: Markers in gynaecological cancer. Arch Gynecol. 1980, 229: 303-310. 10.1007/BF02108581.PubMed
156.
go back to reference Bast RC: Reactivity of a monoclonal antibody with human ovarian carcinoma. J Clin Invest. 1981, 68: 1331-1337. 10.1172/JCI110380.PubMedPubMedCentral Bast RC: Reactivity of a monoclonal antibody with human ovarian carcinoma. J Clin Invest. 1981, 68: 1331-1337. 10.1172/JCI110380.PubMedPubMedCentral
157.
go back to reference Bast RC: 2000 update of recommendations for the use of tumor markers in breast and colorectal cancer: clinical practice guidelines of the American Society of Clinical Oncology. J Clin Oncol. 2001, 19: 1865-1878.PubMed Bast RC: 2000 update of recommendations for the use of tumor markers in breast and colorectal cancer: clinical practice guidelines of the American Society of Clinical Oncology. J Clin Oncol. 2001, 19: 1865-1878.PubMed
158.
go back to reference Hilkens J: Monoclonal antibodies against human milk-fat globule membranes detecting differentiation antigens of the mammary gland and its tumors. Int J Cancer. 1984, 34: 197-206. 10.1002/ijc.2910340210.PubMed Hilkens J: Monoclonal antibodies against human milk-fat globule membranes detecting differentiation antigens of the mammary gland and its tumors. Int J Cancer. 1984, 34: 197-206. 10.1002/ijc.2910340210.PubMed
159.
go back to reference Kufe D: Differential reactivity of a novel monoclonal antibody (DF3) with human malignant versus benign breast tumors. Hybridoma. 1984, 3: 223-232. 10.1089/hyb.1984.3.223.PubMed Kufe D: Differential reactivity of a novel monoclonal antibody (DF3) with human malignant versus benign breast tumors. Hybridoma. 1984, 3: 223-232. 10.1089/hyb.1984.3.223.PubMed
160.
go back to reference Koprowski H: Colorectal carcinoma antigens detected by hybridoma antibodies. Somatic Cell Genet. 1979, 5: 957-971. 10.1007/BF01542654.PubMed Koprowski H: Colorectal carcinoma antigens detected by hybridoma antibodies. Somatic Cell Genet. 1979, 5: 957-971. 10.1007/BF01542654.PubMed
161.
go back to reference Ludwig JA, Weinstein JN: Biomarkers in cancer staging, prognosis and treatment selection. Nat Rev Cancer. 2005, 5: 845-856. 10.1038/nrc1739.PubMed Ludwig JA, Weinstein JN: Biomarkers in cancer staging, prognosis and treatment selection. Nat Rev Cancer. 2005, 5: 845-856. 10.1038/nrc1739.PubMed
162.
go back to reference Coussens L: Tyrosine kinase receptor with extensive homology to EGF receptor shares chromosomal location with neu oncogene. Science. 1985, 230: 1132-1139. 10.1126/science.2999974.PubMed Coussens L: Tyrosine kinase receptor with extensive homology to EGF receptor shares chromosomal location with neu oncogene. Science. 1985, 230: 1132-1139. 10.1126/science.2999974.PubMed
163.
go back to reference Yamamoto T: Similarity of protein encoded by the human c-erb-B-2 gene to epidermal growth factor receptor. Nature. 1986, 319: 230-234. 10.1038/319230a0.PubMed Yamamoto T: Similarity of protein encoded by the human c-erb-B-2 gene to epidermal growth factor receptor. Nature. 1986, 319: 230-234. 10.1038/319230a0.PubMed
164.
go back to reference Wang MC: Purification of a human prostate specific antigen. Invest Urol. 1979, 17: 159-163.PubMed Wang MC: Purification of a human prostate specific antigen. Invest Urol. 1979, 17: 159-163.PubMed
165.
go back to reference Carayanniotis G, Rao VP: Searching for pathogenic epitopes in thyroglobulin: parameters and caveats. Immunol Today. 1977, 18: 83-88. Carayanniotis G, Rao VP: Searching for pathogenic epitopes in thyroglobulin: parameters and caveats. Immunol Today. 1977, 18: 83-88.
166.
go back to reference Sturgeon C: Practice guidelines for tumor marker use in the clinic. Clin Chem. 2002, 48: 1151-1159.PubMed Sturgeon C: Practice guidelines for tumor marker use in the clinic. Clin Chem. 2002, 48: 1151-1159.PubMed
167.
go back to reference Beveridge RA: Review of clinical studies of CA 27.29 in breast cancer management. Int J Biol Markers. 1999, 14: 36-39.PubMed Beveridge RA: Review of clinical studies of CA 27.29 in breast cancer management. Int J Biol Markers. 1999, 14: 36-39.PubMed
168.
go back to reference Kulasingam V, Diamandis EP: Strategies for discovering novel cancer biomarkers through utilization of emerging technologies. Nat Clin Pract Oncol. 2008, 5: 588-599.PubMed Kulasingam V, Diamandis EP: Strategies for discovering novel cancer biomarkers through utilization of emerging technologies. Nat Clin Pract Oncol. 2008, 5: 588-599.PubMed
Metadata
Title
The sweet and sour of serological glycoprotein tumor biomarker quantification
Authors
Uros Kuzmanov
Hari Kosanam
Eleftherios P Diamandis
Publication date
01-12-2013
Publisher
BioMed Central
Published in
BMC Medicine / Issue 1/2013
Electronic ISSN: 1741-7015
DOI
https://doi.org/10.1186/1741-7015-11-31

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