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Published in: Journal of Translational Medicine 2/2014

Open Access 01-12-2014 | Introduction

Synergy-COPD: a systems approach for understanding and managing chronic diseases

Authors: David Gomez-Cabrero, Magi Lluch-Ariet, Jesper Tegnér, Marta Cascante, Felip Miralles, Josep Roca, the Synergy-COPD consortium

Published in: Journal of Translational Medicine | Special Issue 2/2014

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Abstract

Chronic diseases (CD) are generating a dramatic societal burden worldwide that is expected to persist over the next decades. The challenges posed by the epidemics of CD have triggered a novel health paradigm with major consequences on the traditional concept of disease and with a profound impact on key aspects of healthcare systems.
We hypothesized that the development of a systems approach to understand CD together with the generation of an ecosystem to transfer the acquired knowledge into the novel healthcare scenario may contribute to a cost-effective enhancement of health outcomes. To this end, we designed the Synergy-COPD project wherein the heterogeneity of chronic obstructive pulmonary disease (COPD) was addressed as a use case representative of CD.
The current manuscript describes main features of the project design and the strategies put in place for its development, as well the expected outcomes during the project life-span. Moreover, the manuscript serves as introductory and unifying chapter of the different papers associated to the Supplement describing the characteristics, tools and the objectives of Synergy-COPD
Literature
1.
go back to reference Murray CJ, Lopez AD: Mortality by cause for eight regions of the world: Global Burden of Disease Study. Lancet. 1997, 349: 1269-1276. 10.1016/S0140-6736(96)07493-4.CrossRefPubMed Murray CJ, Lopez AD: Mortality by cause for eight regions of the world: Global Burden of Disease Study. Lancet. 1997, 349: 1269-1276. 10.1016/S0140-6736(96)07493-4.CrossRefPubMed
2.
go back to reference Murray CJ, Lopez AD: Regional patterns of disability-free life expectancy and disability-adjusted life expectancy: global Burden of Disease Study. Lancet. 1997, 349: 1347-1352. 10.1016/S0140-6736(96)07494-6.CrossRefPubMed Murray CJ, Lopez AD: Regional patterns of disability-free life expectancy and disability-adjusted life expectancy: global Burden of Disease Study. Lancet. 1997, 349: 1347-1352. 10.1016/S0140-6736(96)07494-6.CrossRefPubMed
3.
go back to reference Murray CJ, Lopez AD: Measuring the global burden of disease. N Engl J Med. 2013, 369: 448-457. 10.1056/NEJMra1201534.CrossRefPubMed Murray CJ, Lopez AD: Measuring the global burden of disease. N Engl J Med. 2013, 369: 448-457. 10.1056/NEJMra1201534.CrossRefPubMed
6.
go back to reference Charlson MEP, Ales P, MacKenzie KL, Ronald C: A new method of classifying prognostic comorbidity in longitudinal studies: Development and validation. Journal of Chronic Diseases. 1987, 40: 373-383. 10.1016/0021-9681(87)90171-8.CrossRefPubMed Charlson MEP, Ales P, MacKenzie KL, Ronald C: A new method of classifying prognostic comorbidity in longitudinal studies: Development and validation. Journal of Chronic Diseases. 1987, 40: 373-383. 10.1016/0021-9681(87)90171-8.CrossRefPubMed
7.
go back to reference Menendez ME, Neuhaus V, van Dijk CN, Ring D: The Elixhauser Comorbidity Method Outperforms the Charlson Index in Predicting Inpatient Death After Orthopaedic Surgery. Clin Orthop Relat Res. 2014, 28: 28- Menendez ME, Neuhaus V, van Dijk CN, Ring D: The Elixhauser Comorbidity Method Outperforms the Charlson Index in Predicting Inpatient Death After Orthopaedic Surgery. Clin Orthop Relat Res. 2014, 28: 28-
8.
go back to reference Ng SK, Holden L, Sun J: Identifying comorbidity patterns of health conditions via cluster analysis of pairwise concordance statistics. Stat Med. 2012, 31: 3393-3405. 10.1002/sim.5426.CrossRefPubMed Ng SK, Holden L, Sun J: Identifying comorbidity patterns of health conditions via cluster analysis of pairwise concordance statistics. Stat Med. 2012, 31: 3393-3405. 10.1002/sim.5426.CrossRefPubMed
9.
go back to reference Rogliani P, Calzetta L, Segreti A, Barrile A, Cazzola M: Diabetes mellitus among outpatients with COPD attending a university hospital. Acta Diabetol. 2014, 13: 13- Rogliani P, Calzetta L, Segreti A, Barrile A, Cazzola M: Diabetes mellitus among outpatients with COPD attending a university hospital. Acta Diabetol. 2014, 13: 13-
10.
go back to reference Epping-Jordan JE, Galea G, Tukuitonga C, Beaglehole R: Preventing chronic diseases: taking stepwise action. The Lancet. 2005, 366: 1667-1671. 10.1016/S0140-6736(05)67342-4.CrossRef Epping-Jordan JE, Galea G, Tukuitonga C, Beaglehole R: Preventing chronic diseases: taking stepwise action. The Lancet. 2005, 366: 1667-1671. 10.1016/S0140-6736(05)67342-4.CrossRef
11.
go back to reference Epping-Jordan JE, Pruitt SD, Bengoa R, Wagner EH: Improving the quality of health care for chronic conditions. Quality & safety in health care. 2004, 13: 299-305. 10.1136/qshc.2004.010744.CrossRef Epping-Jordan JE, Pruitt SD, Bengoa R, Wagner EH: Improving the quality of health care for chronic conditions. Quality & safety in health care. 2004, 13: 299-305. 10.1136/qshc.2004.010744.CrossRef
12.
go back to reference Pruitt S, Canny J, Epping-Jordan JA: Preparing A Health Care Workforce For The 21st Century: The Challenge Of Chronic Conditions. 2005, World Health Organization, Noncommunicable Diseases and Mental Health Cluster, Chronic Diseases and Health Promotion Department Pruitt S, Canny J, Epping-Jordan JA: Preparing A Health Care Workforce For The 21st Century: The Challenge Of Chronic Conditions. 2005, World Health Organization, Noncommunicable Diseases and Mental Health Cluster, Chronic Diseases and Health Promotion Department
13.
14.
go back to reference Barabási AL: Network medicine--from obesity to the "diseasome". The New England journal of medicine. 2007, 357: 404-407. 10.1056/NEJMe078114.CrossRefPubMed Barabási AL: Network medicine--from obesity to the "diseasome". The New England journal of medicine. 2007, 357: 404-407. 10.1056/NEJMe078114.CrossRefPubMed
15.
go back to reference Licastro F, Caruso C: Predictive diagnostics and personalized medicine for the prevention of chronic degenerative diseases. Immun Ageing. 2010, 16: 1742-4933. Licastro F, Caruso C: Predictive diagnostics and personalized medicine for the prevention of chronic degenerative diseases. Immun Ageing. 2010, 16: 1742-4933.
16.
go back to reference Evangelista D, Colonna G, Miele M, Cutugno F, Castello G, Desantis S, Costantini S: CDMS (Clinical Data Mining Software): a cytokinome data mining system for a predictive medicine of chronic inflammatory diseases. Protein Eng Des Sel. 2010, 23: 899-902. 10.1093/protein/gzq068.CrossRefPubMed Evangelista D, Colonna G, Miele M, Cutugno F, Castello G, Desantis S, Costantini S: CDMS (Clinical Data Mining Software): a cytokinome data mining system for a predictive medicine of chronic inflammatory diseases. Protein Eng Des Sel. 2010, 23: 899-902. 10.1093/protein/gzq068.CrossRefPubMed
17.
go back to reference Vestbo J, Hurd SS, Agusti AG, Jones PW, Vogelmeier C, Anzueto A, Barnes PJ, Fabbri LM, Martinez FJ, Nishimura M, Stockley RA, Sin DD, Rodriguez-Roisin R: Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease: GOLD executive summary. American journal of respiratory and critical care medicine. 2013, 187: 347-365. 10.1164/rccm.201204-0596PP.CrossRefPubMed Vestbo J, Hurd SS, Agusti AG, Jones PW, Vogelmeier C, Anzueto A, Barnes PJ, Fabbri LM, Martinez FJ, Nishimura M, Stockley RA, Sin DD, Rodriguez-Roisin R: Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease: GOLD executive summary. American journal of respiratory and critical care medicine. 2013, 187: 347-365. 10.1164/rccm.201204-0596PP.CrossRefPubMed
18.
go back to reference Vestbo J, Agusti A, Wouters EF, Bakke P, Calverley PM, Celli B, Coxson H, Crim C, Edwards LD, Locantore N, Lomas DA, Macnee W, Miller B, Rennard SI, Silverman EK, Yates JC, Tal-Singer R, on behalf of the ECLIPSE Study Investigators: Should We View Chronic Obstructive Pulmonary Disease Differently after ECLIPSE?. A Clinical Perspective from the Study Team. Am J Respir Crit Care Med. 2014, 189: 1022-1030. 10.1164/rccm.201311-2006PP.CrossRefPubMed Vestbo J, Agusti A, Wouters EF, Bakke P, Calverley PM, Celli B, Coxson H, Crim C, Edwards LD, Locantore N, Lomas DA, Macnee W, Miller B, Rennard SI, Silverman EK, Yates JC, Tal-Singer R, on behalf of the ECLIPSE Study Investigators: Should We View Chronic Obstructive Pulmonary Disease Differently after ECLIPSE?. A Clinical Perspective from the Study Team. Am J Respir Crit Care Med. 2014, 189: 1022-1030. 10.1164/rccm.201311-2006PP.CrossRefPubMed
19.
go back to reference Sinden NJ, Stockley RA: Systemic inflammation and comorbidity in COPD: a result of 'overspill' of inflammatory mediators from the lungs? Review of the evidence. Thorax. 2010, 65: 930-936. 10.1136/thx.2009.130260.CrossRefPubMed Sinden NJ, Stockley RA: Systemic inflammation and comorbidity in COPD: a result of 'overspill' of inflammatory mediators from the lungs? Review of the evidence. Thorax. 2010, 65: 930-936. 10.1136/thx.2009.130260.CrossRefPubMed
22.
go back to reference Barnes PJ, Celli BR: Systemic manifestations and comorbidities of COPD. Eur Respir J. 2009, 33: 1165-1185. 10.1183/09031936.00128008.CrossRefPubMed Barnes PJ, Celli BR: Systemic manifestations and comorbidities of COPD. Eur Respir J. 2009, 33: 1165-1185. 10.1183/09031936.00128008.CrossRefPubMed
23.
go back to reference Garcia-Aymerich J, Gómez FP, Benet M, Farrero E, Basagaña X, Gayete À, Paré C, Freixa X, Ferrer J, Ferrer A, Roca J, Gáldiz JB, Sauleda J, Monsó E, Gea J, Barberà JA, Agustí À, Antó JM, PAC-COPD Study Group.: Identification and prospective validation of clinically relevant chronic obstructive pulmonary disease (COPD) subtypes. Thorax. 2011, 66: 430-437. 10.1136/thx.2010.154484.CrossRefPubMed Garcia-Aymerich J, Gómez FP, Benet M, Farrero E, Basagaña X, Gayete À, Paré C, Freixa X, Ferrer J, Ferrer A, Roca J, Gáldiz JB, Sauleda J, Monsó E, Gea J, Barberà JA, Agustí À, Antó JM, PAC-COPD Study Group.: Identification and prospective validation of clinically relevant chronic obstructive pulmonary disease (COPD) subtypes. Thorax. 2011, 66: 430-437. 10.1136/thx.2010.154484.CrossRefPubMed
24.
go back to reference Agusti A, Edwards LD, Rennard SI, MacNee W, Tal-Singer R, Miller BE, Vestbo J, Lomas DA, Calverley PM, Wouters E, Crim C, Yates JC, Silverman EK, Coxson HO, Bakke P, Mayer RJ, Celli B, Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE) Investigators.: Persistent systemic inflammation is associated with poor clinical outcomes in COPD: a novel phenotype. PloS one. 2012, 7: 18-CrossRef Agusti A, Edwards LD, Rennard SI, MacNee W, Tal-Singer R, Miller BE, Vestbo J, Lomas DA, Calverley PM, Wouters E, Crim C, Yates JC, Silverman EK, Coxson HO, Bakke P, Mayer RJ, Celli B, Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE) Investigators.: Persistent systemic inflammation is associated with poor clinical outcomes in COPD: a novel phenotype. PloS one. 2012, 7: 18-CrossRef
25.
go back to reference Mathur S, Brooks D, Carvalho CR: Structural alterations of skeletal muscle in copd. Front Physiol. 2014, 5: Mathur S, Brooks D, Carvalho CR: Structural alterations of skeletal muscle in copd. Front Physiol. 2014, 5:
26.
go back to reference Barreiro E, Gea J: Epigenetics and muscle dysfunction in chronic obstructive pulmonary disease. Transl Res. 2014, 10.1016/j.trsl.2014.04.006. Barreiro E, Gea J: Epigenetics and muscle dysfunction in chronic obstructive pulmonary disease. Transl Res. 2014, 10.1016/j.trsl.2014.04.006.
27.
go back to reference Turan N, Kalko S, Stincone A, Clarke K, Sabah A, Howlett K, Curnow SJ, Rodriguez DA, Cascante M, O'Neill L, Egginton S, Roca J, Falciani F: A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput Biol. 2011, 7: e1002129-10.1371/journal.pcbi.1002129.PubMedCentralCrossRefPubMed Turan N, Kalko S, Stincone A, Clarke K, Sabah A, Howlett K, Curnow SJ, Rodriguez DA, Cascante M, O'Neill L, Egginton S, Roca J, Falciani F: A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput Biol. 2011, 7: e1002129-10.1371/journal.pcbi.1002129.PubMedCentralCrossRefPubMed
28.
go back to reference Hare JM: Nitroso-Redox Balance in the Cardiovascular System. New England Journal of Medicine. 2004, 351: 2112-2114. 10.1056/NEJMe048269.CrossRefPubMed Hare JM: Nitroso-Redox Balance in the Cardiovascular System. New England Journal of Medicine. 2004, 351: 2112-2114. 10.1056/NEJMe048269.CrossRefPubMed
29.
go back to reference Poole DC, Hirai DM, Copp SW, Musch TI: Muscle oxygen transport and utilization in heart failure: implications for exercise (in)tolerance. American journal of physiology Heart and circulatory physiology. 2012, 302: 18-CrossRef Poole DC, Hirai DM, Copp SW, Musch TI: Muscle oxygen transport and utilization in heart failure: implications for exercise (in)tolerance. American journal of physiology Heart and circulatory physiology. 2012, 302: 18-CrossRef
31.
go back to reference Josep Roca, Claudia Vargas, Isaac Cano, Vitaly Selivanov, Esther Barreiro, Dieter Maier, Francesco Falciani, Peter Wagner, Marta Cascante, Judith Garcia-Aymerich, Susana Kalko, Igor Marin, Jesper Tegner, Joan Escarrabill, Alvar Agustí, David Gomez-Cabrero, the Synergy-COPD consortium: Chronic Obstructive Pulmonary Disease Heterogeneity. Challenges for Health Risk Assessment, Stratification and Management. Journal of Translational Medicine. 2014, 12 (Suppl 2): S3-10.1186/1479-5876-12-S2-S3.CrossRef Josep Roca, Claudia Vargas, Isaac Cano, Vitaly Selivanov, Esther Barreiro, Dieter Maier, Francesco Falciani, Peter Wagner, Marta Cascante, Judith Garcia-Aymerich, Susana Kalko, Igor Marin, Jesper Tegner, Joan Escarrabill, Alvar Agustí, David Gomez-Cabrero, the Synergy-COPD consortium: Chronic Obstructive Pulmonary Disease Heterogeneity. Challenges for Health Risk Assessment, Stratification and Management. Journal of Translational Medicine. 2014, 12 (Suppl 2): S3-10.1186/1479-5876-12-S2-S3.CrossRef
32.
go back to reference David Gomez-Cabrero, Jörg Menche, Isaac Cano, Imad Abugessaisa, Mercedes Huertas-Migueláñez, Akos Tenyi, Igor Marin de Mas , Narsis Kiani, Francesco Marabita, Francesco Falciani, Kelly Burrowes, Dieter Maier, Peter Wagner, Vitaly Selivanov, Marta Cascante, Josep Roca, Albert-László Barabási, Jesper Tegnér: Systems Medicine: from molecular features and models to the clinic in COPD. Journal of Translational Medicine. 2014, 12 (Suppl 2): S4-10.1186/1479-5876-12-S2-S4.CrossRef David Gomez-Cabrero, Jörg Menche, Isaac Cano, Imad Abugessaisa, Mercedes Huertas-Migueláñez, Akos Tenyi, Igor Marin de Mas , Narsis Kiani, Francesco Marabita, Francesco Falciani, Kelly Burrowes, Dieter Maier, Peter Wagner, Vitaly Selivanov, Marta Cascante, Josep Roca, Albert-László Barabási, Jesper Tegnér: Systems Medicine: from molecular features and models to the clinic in COPD. Journal of Translational Medicine. 2014, 12 (Suppl 2): S4-10.1186/1479-5876-12-S2-S4.CrossRef
33.
go back to reference Burrowes Kelly S, Doel T, Brightling C: Computational modeling of the obstructive lung diseases asthma and COPD. Journal of Translational Medicine. 2014, 12 (Suppl 2): S5-10.1186/1479-5876-12-S2-S5.PubMedCentralCrossRefPubMed Burrowes Kelly S, Doel T, Brightling C: Computational modeling of the obstructive lung diseases asthma and COPD. Journal of Translational Medicine. 2014, 12 (Suppl 2): S5-10.1186/1479-5876-12-S2-S5.PubMedCentralCrossRefPubMed
34.
go back to reference Isaac Cano, Ákos Tényi, Christine Schueller, Martin Wolff, Mercedes Huertas Migueláñez M, David Gomez-Cabrero, Philipp Antczak, Josep Roca, Marta Cascante, Francesco Falicani, Dieter Maier: The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research. Journal of Translational Medicine. 2014, 12 (Suppl 2): S6-10.1186/1479-5876-12-S2-S6.CrossRef Isaac Cano, Ákos Tényi, Christine Schueller, Martin Wolff, Mercedes Huertas Migueláñez M, David Gomez-Cabrero, Philipp Antczak, Josep Roca, Marta Cascante, Francesco Falicani, Dieter Maier: The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research. Journal of Translational Medicine. 2014, 12 (Suppl 2): S6-10.1186/1479-5876-12-S2-S6.CrossRef
35.
go back to reference Mercedes Huertas Migueláñez M, Daniel Mora, Isaac Cano, Dieter Maier, David Gomez-Cabrero, Magi Lluch-Ariet, Felip Miralles: Simulation Environment and Graphical Visualization Environment: a COPD use-case. Journal of Translational Medicine. 2014, 12 (Suppl 2): S7-10.1186/1479-5876-12-S2-S7.CrossRef Mercedes Huertas Migueláñez M, Daniel Mora, Isaac Cano, Dieter Maier, David Gomez-Cabrero, Magi Lluch-Ariet, Felip Miralles: Simulation Environment and Graphical Visualization Environment: a COPD use-case. Journal of Translational Medicine. 2014, 12 (Suppl 2): S7-10.1186/1479-5876-12-S2-S7.CrossRef
36.
go back to reference Filip Velickovski, Luigi Ceccaroni, Josep Roca, Felip Burgos, Galdiz Juan B, Marina Nueria, Magi Lluch-Ariet: Clinical Decision Support Systems (CDSS) for preventive management of COPD patients. Journal of Translational Medicine. 2014, 12 (Suppl 2): S9-10.1186/1479-5876-12-S2-S9.CrossRef Filip Velickovski, Luigi Ceccaroni, Josep Roca, Felip Burgos, Galdiz Juan B, Marina Nueria, Magi Lluch-Ariet: Clinical Decision Support Systems (CDSS) for preventive management of COPD patients. Journal of Translational Medicine. 2014, 12 (Suppl 2): S9-10.1186/1479-5876-12-S2-S9.CrossRef
37.
go back to reference Isaac Cano, Magi Lluch-Ariet, David Gomez-Cabrero, Dieter Maier, Kalko Susana G, Marta Cascante Marta, Jesper Tégner, Felip Miralles, Daniel Herrera, Josep Roca, the Synergy-COPD consortium: Biomedical Research in a Digital Health Framework. Journal of Translational Medicine. 2014, 12 (Suppl 2): S10-10.1186/1479-5876-12-S2-S10.CrossRef Isaac Cano, Magi Lluch-Ariet, David Gomez-Cabrero, Dieter Maier, Kalko Susana G, Marta Cascante Marta, Jesper Tégner, Felip Miralles, Daniel Herrera, Josep Roca, the Synergy-COPD consortium: Biomedical Research in a Digital Health Framework. Journal of Translational Medicine. 2014, 12 (Suppl 2): S10-10.1186/1479-5876-12-S2-S10.CrossRef
38.
go back to reference Magi Lluch-Ariet, Albert Brugués de la Torre, Francesc Vallverdu, Josep Pegueroles-Valles: Knowledge sharing in the health scenario. Journal of Translational Medicine. 2014, 12 (Suppl 2): S8-10.1186/1479-5876-12-S2-S8.CrossRef Magi Lluch-Ariet, Albert Brugués de la Torre, Francesc Vallverdu, Josep Pegueroles-Valles: Knowledge sharing in the health scenario. Journal of Translational Medicine. 2014, 12 (Suppl 2): S8-10.1186/1479-5876-12-S2-S8.CrossRef
39.
go back to reference Marta Cascante, de Atauri P, David Gomez-Cabrero, Peter Wagner, Centelles JJ, Marin S, Isaac Cano, Felip Velickovski, Igor Marin de Mas, Dieter Maier, Josep Roca, Philippe Sabatier: Workforce preparation: The Biohealth Computing Model for Master and PhD students. Journal of Translational Medicine. 2014, 12 (Suppl 2): S11-10.1186/1479-5876-12-S2-S11.CrossRef Marta Cascante, de Atauri P, David Gomez-Cabrero, Peter Wagner, Centelles JJ, Marin S, Isaac Cano, Felip Velickovski, Igor Marin de Mas, Dieter Maier, Josep Roca, Philippe Sabatier: Workforce preparation: The Biohealth Computing Model for Master and PhD students. Journal of Translational Medicine. 2014, 12 (Suppl 2): S11-10.1186/1479-5876-12-S2-S11.CrossRef
40.
go back to reference Felip Miralles, David Gomez-Cabrero, Magi Lluch-Ariet, Jesper Tegnér, Marta Cascante, Josep Roca, the Synergy-COPD consortium: Predictive Medicine: Outcomes, Challenges and Opportunities in the Synergy-COPD project. Journal of Translational Medicine. 2014, 12 (Suppl 2): S12-10.1186/1479-5876-12-S2-S12.CrossRef Felip Miralles, David Gomez-Cabrero, Magi Lluch-Ariet, Jesper Tegnér, Marta Cascante, Josep Roca, the Synergy-COPD consortium: Predictive Medicine: Outcomes, Challenges and Opportunities in the Synergy-COPD project. Journal of Translational Medicine. 2014, 12 (Suppl 2): S12-10.1186/1479-5876-12-S2-S12.CrossRef
41.
go back to reference Auffray C, Charron D, Hood L: Predictive, preventive, personalized and participatory medicine: back to the future. Genome Medicine. 2010, 2: 57-10.1186/gm178.PubMedCentralCrossRefPubMed Auffray C, Charron D, Hood L: Predictive, preventive, personalized and participatory medicine: back to the future. Genome Medicine. 2010, 2: 57-10.1186/gm178.PubMedCentralCrossRefPubMed
42.
go back to reference Hood L, Friend SH: Predictive, personalized, preventive, participatory (P4) cancer medicine. Nat Rev Clin Oncol. 2011, 8: 184-187. 10.1038/nrclinonc.2010.227.CrossRefPubMed Hood L, Friend SH: Predictive, personalized, preventive, participatory (P4) cancer medicine. Nat Rev Clin Oncol. 2011, 8: 184-187. 10.1038/nrclinonc.2010.227.CrossRefPubMed
43.
go back to reference Hood L, Auffray C: Participatory medicine: a driving force for revolutionizing healthcare. Genome Med. 2013, 5: Hood L, Auffray C: Participatory medicine: a driving force for revolutionizing healthcare. Genome Med. 2013, 5:
44.
go back to reference Maltais F, Decramer M, Casaburi R, Barreiro E, Burelle Y, Debigare R, Dekhuijzen PN, Franssen F, Gayan-Ramirez G, Gea J, Gosker HR, Gosselink R, Hayot M, Hussain SN, Janssens W, Polkey MI, Roca J, Saey D, Schols AM, Spruit MA, Steiner M, Taivassalo T, Troosters T, Vogiatzis I, Wagner PD, ATS/ERS Ad Hoc Committee on Limb Muscle Dysfunction in COPD: An Official American Thoracic Society/European Respiratory Society Statement: Update on Limb Muscle Dysfunction in Chronic Obstructive Pulmonary Disease. American journal of respiratory and critical care medicine. 2014, 189: e15-e62. 10.1164/rccm.201402-0373ST.PubMedCentralCrossRefPubMed Maltais F, Decramer M, Casaburi R, Barreiro E, Burelle Y, Debigare R, Dekhuijzen PN, Franssen F, Gayan-Ramirez G, Gea J, Gosker HR, Gosselink R, Hayot M, Hussain SN, Janssens W, Polkey MI, Roca J, Saey D, Schols AM, Spruit MA, Steiner M, Taivassalo T, Troosters T, Vogiatzis I, Wagner PD, ATS/ERS Ad Hoc Committee on Limb Muscle Dysfunction in COPD: An Official American Thoracic Society/European Respiratory Society Statement: Update on Limb Muscle Dysfunction in Chronic Obstructive Pulmonary Disease. American journal of respiratory and critical care medicine. 2014, 189: e15-e62. 10.1164/rccm.201402-0373ST.PubMedCentralCrossRefPubMed
45.
go back to reference Vanfleteren LE, Spruit MA, Groenen M, Gaffron S, van Empel VP, Bruijnzeel PL, Rutten EP, Op 't Roodt J, Wouters EF, Franssen FM: Clusters of comorbidities based on validated objective measurements and systemic inflammation in patients with chronic obstructive pulmonary disease. American journal of respiratory and critical care medicine. 2013, 187: 728-735. 10.1164/rccm.201209-1665OC.CrossRefPubMed Vanfleteren LE, Spruit MA, Groenen M, Gaffron S, van Empel VP, Bruijnzeel PL, Rutten EP, Op 't Roodt J, Wouters EF, Franssen FM: Clusters of comorbidities based on validated objective measurements and systemic inflammation in patients with chronic obstructive pulmonary disease. American journal of respiratory and critical care medicine. 2013, 187: 728-735. 10.1164/rccm.201209-1665OC.CrossRefPubMed
46.
go back to reference Divo M, Cote C, de Torres JP, Casanova C, Marin JM, Pinto-Plata V, Zulueta J, Cabrera C, Zagaceta J, Hunninghake G, Celli B: Comorbidities and risk of mortality in patients with chronic obstructive pulmonary disease. American journal of respiratory and critical care medicine. 2012, 186: 155-161. 10.1164/rccm.201201-0034OC.CrossRefPubMed Divo M, Cote C, de Torres JP, Casanova C, Marin JM, Pinto-Plata V, Zulueta J, Cabrera C, Zagaceta J, Hunninghake G, Celli B: Comorbidities and risk of mortality in patients with chronic obstructive pulmonary disease. American journal of respiratory and critical care medicine. 2012, 186: 155-161. 10.1164/rccm.201201-0034OC.CrossRefPubMed
47.
go back to reference Miller J, Edwards LD, Agusti A, Bakke P, Calverley PM, Celli B, Coxson HO, Crim C, Lomas DA, Miller BE, Rennard S, Silverman EK, Tal-Singer R, Vestbo J, Wouters E, Yates JC, Macnee W, Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE) Investigators: Comorbidity, systemic inflammation and outcomes in the ECLIPSE cohort. Respiratory medicine. 2013, 107: 1376-1384. 10.1016/j.rmed.2013.05.001.CrossRefPubMed Miller J, Edwards LD, Agusti A, Bakke P, Calverley PM, Celli B, Coxson HO, Crim C, Lomas DA, Miller BE, Rennard S, Silverman EK, Tal-Singer R, Vestbo J, Wouters E, Yates JC, Macnee W, Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints (ECLIPSE) Investigators: Comorbidity, systemic inflammation and outcomes in the ECLIPSE cohort. Respiratory medicine. 2013, 107: 1376-1384. 10.1016/j.rmed.2013.05.001.CrossRefPubMed
48.
go back to reference Fabbri LM, Beghe B, Agusti A: COPD and the solar system: introducing the chronic obstructive pulmonary disease comorbidome. Am J Respir Crit Care Med. 2012, 186 (2): 117-9. 10.1164/rccm.201205-0906ED. Jul 15; doi: 10.1164/rccm.201205-0906EDCrossRefPubMed Fabbri LM, Beghe B, Agusti A: COPD and the solar system: introducing the chronic obstructive pulmonary disease comorbidome. Am J Respir Crit Care Med. 2012, 186 (2): 117-9. 10.1164/rccm.201205-0906ED. Jul 15; doi: 10.1164/rccm.201205-0906EDCrossRefPubMed
49.
go back to reference Burrowes KS, De Backer J, Smallwood R, Sterk PJ, Gut I, Wirix-Speetjens R, Siddiqui S, Owers-Bradley J, Wild J, Maier D, Brightling C: Multi-scale computational models of the airways to unravel the pathophysiological mechanisms in asthma and chronic obstructive pulmonary disease (AirPROM). Interface Focus. 2013, 3: Burrowes KS, De Backer J, Smallwood R, Sterk PJ, Gut I, Wirix-Speetjens R, Siddiqui S, Owers-Bradley J, Wild J, Maier D, Brightling C: Multi-scale computational models of the airways to unravel the pathophysiological mechanisms in asthma and chronic obstructive pulmonary disease (AirPROM). Interface Focus. 2013, 3:
50.
go back to reference Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Marin de Mas I, Turan N, Cascante M, Falciani F, Hernandez M, Villà-Freixa J, Losko S: Knowledge management for Systems Biology a general and visually driven framework applied to translational medicine. BMC systems biology. 2011, 5: 38-10.1186/1752-0509-5-38.PubMedCentralCrossRefPubMed Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Marin de Mas I, Turan N, Cascante M, Falciani F, Hernandez M, Villà-Freixa J, Losko S: Knowledge management for Systems Biology a general and visually driven framework applied to translational medicine. BMC systems biology. 2011, 5: 38-10.1186/1752-0509-5-38.PubMedCentralCrossRefPubMed
51.
go back to reference Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ: STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013, 41: 29-CrossRef Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ: STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013, 41: 29-CrossRef
53.
go back to reference Westerhoff HV, Kelt DB: Matrix method for determining steps most rate-limiting to metabolic fluxes in biotechnological processes 1987. Biotechnol Bioeng. 2009, 104: 1-9. 10.1002/bit.22458.CrossRefPubMed Westerhoff HV, Kelt DB: Matrix method for determining steps most rate-limiting to metabolic fluxes in biotechnological processes 1987. Biotechnol Bioeng. 2009, 104: 1-9. 10.1002/bit.22458.CrossRefPubMed
54.
go back to reference Westerhoff HV, Winder C, Messiha H, Simeonidis E, Adamczyk M, Verma M, Bruggeman FJ, Dunn W: Systems biology: the elements and principles of life. FEBS Lett. 2009, 583: 3882-3890. 10.1016/j.febslet.2009.11.018.CrossRefPubMed Westerhoff HV, Winder C, Messiha H, Simeonidis E, Adamczyk M, Verma M, Bruggeman FJ, Dunn W: Systems biology: the elements and principles of life. FEBS Lett. 2009, 583: 3882-3890. 10.1016/j.febslet.2009.11.018.CrossRefPubMed
55.
go back to reference Chen W, Liu M: Research on SOA for hospital information system. Zhongguo Yi Liao Qi Xie Za Zhi. 2010, 34: 378-380.PubMed Chen W, Liu M: Research on SOA for hospital information system. Zhongguo Yi Liao Qi Xie Za Zhi. 2010, 34: 378-380.PubMed
56.
go back to reference Cano I, Mickael M, Gomez-Cabrero D, Tegnér J, Roca J, Wagner P: Importance of mitochondrial PO2 in maximal O2 transport and utilization: a theoretical analysis. Resp Physiol and Neurology. 2013, 189 (3): 477-83. 10.1016/j.resp.2013.08.020.CrossRef Cano I, Mickael M, Gomez-Cabrero D, Tegnér J, Roca J, Wagner P: Importance of mitochondrial PO2 in maximal O2 transport and utilization: a theoretical analysis. Resp Physiol and Neurology. 2013, 189 (3): 477-83. 10.1016/j.resp.2013.08.020.CrossRef
57.
go back to reference Wagner P: A theoretical analysis of factors determining VO2max at sea level and altitude. 1996 Wagner P: A theoretical analysis of factors determining VO2max at sea level and altitude. 1996
58.
go back to reference Wagner P: Algebraic analysis of the determinants of VO2,max. 1993 Wagner P: Algebraic analysis of the determinants of VO2,max. 1993
59.
go back to reference Selivanov VA, Votyakova TV, Zeak JA, Trucco M, Roca J, Cascante M: Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia. PLoS Comput Biol. 2009, 5: e1000619-10.1371/journal.pcbi.1000619.PubMedCentralCrossRefPubMed Selivanov VA, Votyakova TV, Zeak JA, Trucco M, Roca J, Cascante M: Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia. PLoS Comput Biol. 2009, 5: e1000619-10.1371/journal.pcbi.1000619.PubMedCentralCrossRefPubMed
60.
go back to reference Cano I, Alonso A, Hernandez C, Burgos F, Martinez-Roldan J, Roca J: A Multi-tier ICT Framework to Deploy Integrated Care Services. Submitted to BMC Medical Informatics and Decision Making. 2014 Cano I, Alonso A, Hernandez C, Burgos F, Martinez-Roldan J, Roca J: A Multi-tier ICT Framework to Deploy Integrated Care Services. Submitted to BMC Medical Informatics and Decision Making. 2014
61.
go back to reference Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U: COPASI--a COmplex PAthway SImulator. Bioinformatics. 2006, 22: 3067-3074. 10.1093/bioinformatics/btl485.CrossRefPubMed Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U: COPASI--a COmplex PAthway SImulator. Bioinformatics. 2006, 22: 3067-3074. 10.1093/bioinformatics/btl485.CrossRefPubMed
62.
go back to reference Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, Corrias A, Davit Y, Dunn SJ, Fletcher AG, Harvey DG, Marsh ME, Osborne JM, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan DJ: Chaste: an open source C++ library for computational physiology and biology. PLoS Comput Biol. 2013, 9: 14- Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, Corrias A, Davit Y, Dunn SJ, Fletcher AG, Harvey DG, Marsh ME, Osborne JM, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan DJ: Chaste: an open source C++ library for computational physiology and biology. PLoS Comput Biol. 2013, 9: 14-
63.
go back to reference Chaouiya C, Berenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Drager A, Buchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst Biol. 2013, 7: 135-10.1186/1752-0509-7-135.PubMedCentralCrossRefPubMed Chaouiya C, Berenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Drager A, Buchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst Biol. 2013, 7: 135-10.1186/1752-0509-7-135.PubMedCentralCrossRefPubMed
64.
go back to reference Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielson PM, Nomura T, Subramanium S, Wilmalaratne SM, Yu T: CellML metadata standards, associated tools and repositories. Philos Trans A Math Phys Eng Sci. 2009, 367: 1845-1867. 10.1098/rsta.2008.0310.PubMedCentralCrossRefPubMed Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielson PM, Nomura T, Subramanium S, Wilmalaratne SM, Yu T: CellML metadata standards, associated tools and repositories. Philos Trans A Math Phys Eng Sci. 2009, 367: 1845-1867. 10.1098/rsta.2008.0310.PubMedCentralCrossRefPubMed
65.
go back to reference Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol. 2010, 4: 92-10.1186/1752-0509-4-92.PubMedCentralCrossRefPubMed Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol. 2010, 4: 92-10.1186/1752-0509-4-92.PubMedCentralCrossRefPubMed
66.
go back to reference Miller AK, Yu T, Britten R, Cooling MT, Lawson J, Cowan D, Garny A, Halstead MD, Hunter PJ, Nickerson DP, Nunns G, Wimalaratne SM, Nielson PM: Revision history aware repositories of computational models of biological systems. BMC Bioinformatics. 2011, 12: 22-10.1186/1471-2105-12-22.PubMedCentralCrossRefPubMed Miller AK, Yu T, Britten R, Cooling MT, Lawson J, Cowan D, Garny A, Halstead MD, Hunter PJ, Nickerson DP, Nunns G, Wimalaratne SM, Nielson PM: Revision history aware repositories of computational models of biological systems. BMC Bioinformatics. 2011, 12: 22-10.1186/1471-2105-12-22.PubMedCentralCrossRefPubMed
67.
go back to reference Kitano H: Systems biology: a brief overview. Science. 2002, (New York, NY), 295: 1662-1664. 10.1126/science.1069492. Kitano H: Systems biology: a brief overview. Science. 2002, (New York, NY), 295: 1662-1664. 10.1126/science.1069492.
68.
go back to reference Chen B, Chen M, Paisley J, Zaas A, Woods C, Ginsburg GS, Hero A, Lucas J, Dunson D, Carin L: Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies. BMC Bioinformatics. 2010, 11: 552-10.1186/1471-2105-11-552.PubMedCentralCrossRefPubMed Chen B, Chen M, Paisley J, Zaas A, Woods C, Ginsburg GS, Hero A, Lucas J, Dunson D, Carin L: Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies. BMC Bioinformatics. 2010, 11: 552-10.1186/1471-2105-11-552.PubMedCentralCrossRefPubMed
69.
go back to reference van Riel NA: Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. Brief Bioinform. 2006, 7: 364-374. 10.1093/bib/bbl040.CrossRefPubMed van Riel NA: Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. Brief Bioinform. 2006, 7: 364-374. 10.1093/bib/bbl040.CrossRefPubMed
70.
go back to reference Hodgkin AL, Huxley AF: Currents carried by sodium and potassium ions through the membrane of the giant axon of Loligo. The Journal of physiology. 1952, 116: 449-472. 10.1113/jphysiol.1952.sp004717.PubMedCentralCrossRefPubMed Hodgkin AL, Huxley AF: Currents carried by sodium and potassium ions through the membrane of the giant axon of Loligo. The Journal of physiology. 1952, 116: 449-472. 10.1113/jphysiol.1952.sp004717.PubMedCentralCrossRefPubMed
71.
go back to reference Wolkenhauer O: The role of theory and modeling in medical research. Front Physiol. 2013, 4: Wolkenhauer O: The role of theory and modeling in medical research. Front Physiol. 2013, 4:
73.
go back to reference Bousquet J, Anto J, Sterk P, Adcock I, Chung K, Roca J, Agusti A, Brightling C, Cambon-Thomsen A, Cesario A, Abdelhak S, Antonarakis SE, Avignon A, Ballabio A, Baraldi E, Baranov A, Bieber T, Bockaert J, Brahmachari S, Brambilla C, Bringer J, Dauzat M, Ernberg I, Fabbri L, Froquel P, Galas D, Gojobori T, Hunter P, Jorgensen C, Kauffmann F: Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. 2011, 3: 43-10.1186/gm259.PubMedCentralCrossRefPubMed Bousquet J, Anto J, Sterk P, Adcock I, Chung K, Roca J, Agusti A, Brightling C, Cambon-Thomsen A, Cesario A, Abdelhak S, Antonarakis SE, Avignon A, Ballabio A, Baraldi E, Baranov A, Bieber T, Bockaert J, Brahmachari S, Brambilla C, Bringer J, Dauzat M, Ernberg I, Fabbri L, Froquel P, Galas D, Gojobori T, Hunter P, Jorgensen C, Kauffmann F: Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. 2011, 3: 43-10.1186/gm259.PubMedCentralCrossRefPubMed
74.
go back to reference Garcia-Aymerich J, Gomez FP, Benet M, Farrero E, Basagana X, Gayete A, Pare C, Freixa X, Ferrer J, Ferrer A, Roca J, Gáldiz JB, Sauleda J, Monsó E, Gea J, Barberà JA, Agustí À, Antó JM, PAC-COPD Study Group: Identification and prospective validation of clinically relevant chronic obstructive pulmonary disease (COPD) subtypes. Thorax. 2011, 66: 430-437. 10.1136/thx.2010.154484.CrossRefPubMed Garcia-Aymerich J, Gomez FP, Benet M, Farrero E, Basagana X, Gayete A, Pare C, Freixa X, Ferrer J, Ferrer A, Roca J, Gáldiz JB, Sauleda J, Monsó E, Gea J, Barberà JA, Agustí À, Antó JM, PAC-COPD Study Group: Identification and prospective validation of clinically relevant chronic obstructive pulmonary disease (COPD) subtypes. Thorax. 2011, 66: 430-437. 10.1136/thx.2010.154484.CrossRefPubMed
75.
go back to reference Wardlaw AJ, Silverman M, Siva R, Pavord ID, Green R: Multi-dimensional phenotyping: towards a new taxonomy for airway disease. Clin Exp Allergy. 2005, 35: 1254-1262. 10.1111/j.1365-2222.2005.02344.x.CrossRefPubMed Wardlaw AJ, Silverman M, Siva R, Pavord ID, Green R: Multi-dimensional phenotyping: towards a new taxonomy for airway disease. Clin Exp Allergy. 2005, 35: 1254-1262. 10.1111/j.1365-2222.2005.02344.x.CrossRefPubMed
76.
go back to reference Chu JH, Hersh CP, Castaldi PJ, Cho MH, Raby BA, Laird N, Bowler R, Rennard S, Loscalzo J, Quakenbush J, Silverman EK: Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD. BMC Syst Biol. 2014, 8: 78-10.1186/1752-0509-8-78.PubMedCentralCrossRefPubMed Chu JH, Hersh CP, Castaldi PJ, Cho MH, Raby BA, Laird N, Bowler R, Rennard S, Loscalzo J, Quakenbush J, Silverman EK: Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD. BMC Syst Biol. 2014, 8: 78-10.1186/1752-0509-8-78.PubMedCentralCrossRefPubMed
77.
go back to reference Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, Wrobel MJ, Lerner J, Brunet JP, Subramanian A, Ross KN, Reich M, Hieronymus H, Wei G, Armstrong SA, Haggarty SJ, Clemons PA, Wei R, Carr SA, Lander ES, Golub TR: The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science (New York, NY). 2006, 313: 1929-1935. 10.1126/science.1132939.CrossRef Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, Wrobel MJ, Lerner J, Brunet JP, Subramanian A, Ross KN, Reich M, Hieronymus H, Wei G, Armstrong SA, Haggarty SJ, Clemons PA, Wei R, Carr SA, Lander ES, Golub TR: The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science (New York, NY). 2006, 313: 1929-1935. 10.1126/science.1132939.CrossRef
78.
go back to reference Bao H, Wang J, Zhou D, Han Z, Su L, Zhang Y, Ye X, Xu C, Wang Y, Li Q: Protein-protein interaction network analysis in chronic obstructive pulmonary disease. Lung. 2014, 192: 87-93. 10.1007/s00408-013-9509-x.CrossRefPubMed Bao H, Wang J, Zhou D, Han Z, Su L, Zhang Y, Ye X, Xu C, Wang Y, Li Q: Protein-protein interaction network analysis in chronic obstructive pulmonary disease. Lung. 2014, 192: 87-93. 10.1007/s00408-013-9509-x.CrossRefPubMed
79.
go back to reference Menche J, Sharma A, Cho MH, Mayer RJ, Rennard SI, Celli B, Miller BE, Locantore N, Tal-Singer R, Ghosh S, Larminie G, Bradley G, Riley JH, Agusti A, Silverman EK, Barabási AL: A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease. BMC Systems Biology. 2014, 8 (Suppl 2): S8-10.1186/1752-0509-8-S2-S8.PubMedCentralCrossRefPubMed Menche J, Sharma A, Cho MH, Mayer RJ, Rennard SI, Celli B, Miller BE, Locantore N, Tal-Singer R, Ghosh S, Larminie G, Bradley G, Riley JH, Agusti A, Silverman EK, Barabási AL: A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease. BMC Systems Biology. 2014, 8 (Suppl 2): S8-10.1186/1752-0509-8-S2-S8.PubMedCentralCrossRefPubMed
80.
go back to reference BioBridge: Integrative Genomics and Chronic Disease Phenotypes: modelling and simulation tools for clinicians. BioBridge project grant agreement nº. 037909, 2006-2009. FP6-2005-LIFESCIHEALTH-7 BioBridge: Integrative Genomics and Chronic Disease Phenotypes: modelling and simulation tools for clinicians. BioBridge project grant agreement nº. 037909, 2006-2009. FP6-2005-LIFESCIHEALTH-7
81.
go back to reference Arrell DK, Terzic A: Interpreting networks in systems biology. Clin Pharmacol Ther. 2013, 93: 389-392. 10.1038/clpt.2013.28.CrossRefPubMed Arrell DK, Terzic A: Interpreting networks in systems biology. Clin Pharmacol Ther. 2013, 93: 389-392. 10.1038/clpt.2013.28.CrossRefPubMed
82.
go back to reference Rodríguez D, Alcarraz-Vizán G, Díaz-Moralli S, Reed M, Gómez F, Falciani F, Günther U, Roca J, Cascante M: Plasma metabolic profile in COPD patients: effects of exercise and endurance training. Metabolomics. 2012, 8 (3): 508-516. 10.1007/s11306-011-0336-x.CrossRef Rodríguez D, Alcarraz-Vizán G, Díaz-Moralli S, Reed M, Gómez F, Falciani F, Günther U, Roca J, Cascante M: Plasma metabolic profile in COPD patients: effects of exercise and endurance training. Metabolomics. 2012, 8 (3): 508-516. 10.1007/s11306-011-0336-x.CrossRef
83.
go back to reference Kalko S, Puig-Vilanova E, Perez-Olabarria M, Falciani F, Gea J, Cascante M, Barreiro E, Roca J: Muscle and blood redox status after exercise training in severe COPD patients. Free Radic Biol Med. 2012, 52 (1): 88-9. 10.1016/j.freeradbiomed.2011.09.022.CrossRefPubMed Kalko S, Puig-Vilanova E, Perez-Olabarria M, Falciani F, Gea J, Cascante M, Barreiro E, Roca J: Muscle and blood redox status after exercise training in severe COPD patients. Free Radic Biol Med. 2012, 52 (1): 88-9. 10.1016/j.freeradbiomed.2011.09.022.CrossRefPubMed
84.
go back to reference Lauderdale DS, Furner SE, Miles TP, Goldberg J: Epidemiologic uses of Medicare data. Epidemiologic Reviews. 1993, 15 (2): 319-27.PubMed Lauderdale DS, Furner SE, Miles TP, Goldberg J: Epidemiologic uses of Medicare data. Epidemiologic Reviews. 1993, 15 (2): 319-27.PubMed
85.
go back to reference Park J, Lee DS, Christakis Na, Barabási AL: The impact of cellular networks on disease comorbidity. Molecular Systems Biology. 2009, 5 (262): 262-PubMedCentralPubMed Park J, Lee DS, Christakis Na, Barabási AL: The impact of cellular networks on disease comorbidity. Molecular Systems Biology. 2009, 5 (262): 262-PubMedCentralPubMed
Metadata
Title
Synergy-COPD: a systems approach for understanding and managing chronic diseases
Authors
David Gomez-Cabrero
Magi Lluch-Ariet
Jesper Tegnér
Marta Cascante
Felip Miralles
Josep Roca
the Synergy-COPD consortium
Publication date
01-12-2014
Publisher
BioMed Central
Published in
Journal of Translational Medicine / Issue Special Issue 2/2014
Electronic ISSN: 1479-5876
DOI
https://doi.org/10.1186/1479-5876-12-S2-S2

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