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Published in: Magnetic Resonance Materials in Physics, Biology and Medicine 5/2018

01-10-2018 | Research Article

Optimization of diffusion-weighted single-refocused spin-echo EPI by reducing eddy-current artifacts and shortening the echo time

Authors: Manoj Shrestha, Pavel Hok, Ulrike Nöth, Bianca Lienerth, Ralf Deichmann

Published in: Magnetic Resonance Materials in Physics, Biology and Medicine | Issue 5/2018

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Abstract

Objective

The purpose of this work was to optimize the acquisition of diffusion-weighted (DW) single-refocused spin-echo (srSE) data without intrinsic eddy-current compensation (ECC) for an improved performance of ECC postprocessing. The rationale is that srSE sequences without ECC may yield shorter echo times (TE) and thus higher signal-to-noise ratios (SNR) than srSE or twice-refocused spin-echo (trSE) schemes with intrinsic ECC.

Materials and methods

The proposed method employs dummy scans with DW gradients to drive eddy currents into a steady state before data acquisition. Parameters of the ECC postprocessing algorithm were also optimized. Simulations were performed to obtain minimum TE values for the proposed sequence and sequences with intrinsic ECC. Experimentally, the proposed method was compared with standard DW-trSE imaging, both in vitro and in vivo.

Results

Simulations showed substantially shorter TE for the proposed method than for methods with intrinsic ECC when using shortened echo readouts. Data of the proposed method showed a marked increase in SNR. A dummy scan duration of at least 1.5 s improved performance of the ECC postprocessing algorithm.

Conclusion

Changes proposed for the DW-srSE sequence and for the parameter setting of the postprocessing ECC algorithm considerably reduced eddy-current artifacts and provided a higher SNR.
Literature
1.
go back to reference Le Bihan D, Mangin JF, Poupon C, Clark CA, Pappata S, Molko N, Chabriat H (2001) Diffusion tensor imaging: concepts and applications. J Magn Reson Imaging 13(4):534–546CrossRefPubMed Le Bihan D, Mangin JF, Poupon C, Clark CA, Pappata S, Molko N, Chabriat H (2001) Diffusion tensor imaging: concepts and applications. J Magn Reson Imaging 13(4):534–546CrossRefPubMed
2.
go back to reference Mori S, Zhang J (2006) Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron 51(5):527–539CrossRefPubMed Mori S, Zhang J (2006) Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron 51(5):527–539CrossRefPubMed
3.
go back to reference Lerner A, Mogensen MA, Kim PE, Shiroishi MS, Hwang DH, Law M (2014) Clinical applications of diffusion tensor imaging. World Neurosurg 82(1):96–109CrossRefPubMed Lerner A, Mogensen MA, Kim PE, Shiroishi MS, Hwang DH, Law M (2014) Clinical applications of diffusion tensor imaging. World Neurosurg 82(1):96–109CrossRefPubMed
4.
go back to reference Stejskal EO, Tanner JE (1965) Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J Chem Phys 42(1):288–292CrossRef Stejskal EO, Tanner JE (1965) Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J Chem Phys 42(1):288–292CrossRef
5.
go back to reference Turner R, Le Bihan D, Maier J, Vavrek R, Hedges LK, Pekar J (1990) Echo-planar imaging of intravoxel incoherent motion. Radiology 177(2):407–414CrossRefPubMed Turner R, Le Bihan D, Maier J, Vavrek R, Hedges LK, Pekar J (1990) Echo-planar imaging of intravoxel incoherent motion. Radiology 177(2):407–414CrossRefPubMed
6.
go back to reference Jezzard P, Barnett AS, Pierpaoli C (1998) Characterization of and correction for eddy current artifacts in echo planar diffusion imaging. Magn Reson Med 39(5):801–812CrossRefPubMed Jezzard P, Barnett AS, Pierpaoli C (1998) Characterization of and correction for eddy current artifacts in echo planar diffusion imaging. Magn Reson Med 39(5):801–812CrossRefPubMed
7.
go back to reference Le Bihan D, Poupon C, Amadon A, Lethimonnier F (2006) Artifacts and pitfalls in diffusion MRI. J Magn Reson Imaging 24(3):478–488CrossRefPubMed Le Bihan D, Poupon C, Amadon A, Lethimonnier F (2006) Artifacts and pitfalls in diffusion MRI. J Magn Reson Imaging 24(3):478–488CrossRefPubMed
8.
go back to reference Alexander AL, Tsuruda JS, Parker DL (1997) Elimination of eddy current artifacts in diffusion-weighted echo-planar images: the use of bipolar gradients. Magn Reson Med 38(6):1016–1021CrossRefPubMed Alexander AL, Tsuruda JS, Parker DL (1997) Elimination of eddy current artifacts in diffusion-weighted echo-planar images: the use of bipolar gradients. Magn Reson Med 38(6):1016–1021CrossRefPubMed
9.
go back to reference Finsterbusch J (2009) Eddy-current compensated diffusion weighting with a single refocusing RF pulse. Magn Reson Med 61(3):748–754CrossRefPubMed Finsterbusch J (2009) Eddy-current compensated diffusion weighting with a single refocusing RF pulse. Magn Reson Med 61(3):748–754CrossRefPubMed
10.
go back to reference Aliotta E, Moulin K, Ennis DB (2018) Eddy current–nulled convex optimized diffusion encoding (EN-CODE) for distortion-free diffusion tensor imaging with short echo times. Magn Reson Med 79(2):663–672CrossRefPubMed Aliotta E, Moulin K, Ennis DB (2018) Eddy current–nulled convex optimized diffusion encoding (EN-CODE) for distortion-free diffusion tensor imaging with short echo times. Magn Reson Med 79(2):663–672CrossRefPubMed
11.
go back to reference Calamante F, Porter DA, Gadian DG, Connelly A (1999) Correction for eddy current induced Bo shifts in diffusion-weighted echo-planar imaging. Magn Reson Med 41(1):95–102CrossRefPubMed Calamante F, Porter DA, Gadian DG, Connelly A (1999) Correction for eddy current induced Bo shifts in diffusion-weighted echo-planar imaging. Magn Reson Med 41(1):95–102CrossRefPubMed
12.
go back to reference Boesch C, Gruetter R, Martin E (1991) Temporal and spatial analysis of fields generated by eddy currents in superconducting magnets: optimization of corrections and quantitative characterization of magnet/gradient systems. Magn Reson Med 20(2):268–284CrossRefPubMed Boesch C, Gruetter R, Martin E (1991) Temporal and spatial analysis of fields generated by eddy currents in superconducting magnets: optimization of corrections and quantitative characterization of magnet/gradient systems. Magn Reson Med 20(2):268–284CrossRefPubMed
13.
go back to reference Heid O (2000). Eddy current-nulled diffusion weighting. In: Proceedings of the 8th annual meeting of ISMRM, Denver, p 799 Heid O (2000). Eddy current-nulled diffusion weighting. In: Proceedings of the 8th annual meeting of ISMRM, Denver, p 799
14.
go back to reference Reese TG, Heid O, Weisskoff RM, Wedeen VJ (2003) Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn Reson Med 49(1):177–182CrossRefPubMed Reese TG, Heid O, Weisskoff RM, Wedeen VJ (2003) Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn Reson Med 49(1):177–182CrossRefPubMed
15.
go back to reference Chan RW, von Deuster C, Giese D, Stoeck CT, Harmer J, Aitken AP, Atkinson D, Kozerke S (2014) Characterization and correction of eddy-current artifacts in unipolar and bipolar diffusion sequences using magnetic field monitoring. J Magn Reson 244:74–84CrossRefPubMed Chan RW, von Deuster C, Giese D, Stoeck CT, Harmer J, Aitken AP, Atkinson D, Kozerke S (2014) Characterization and correction of eddy-current artifacts in unipolar and bipolar diffusion sequences using magnetic field monitoring. J Magn Reson 244:74–84CrossRefPubMed
16.
go back to reference Vannesjo SJ, Haeberlin M, Kasper L, Pavan M, Wilm BJ, Barmet C, Pruessmann KP (2013) Gradient system characterization by impulse response measurements with a dynamic field camera. Magn Reson Med 69(2):583–593CrossRefPubMed Vannesjo SJ, Haeberlin M, Kasper L, Pavan M, Wilm BJ, Barmet C, Pruessmann KP (2013) Gradient system characterization by impulse response measurements with a dynamic field camera. Magn Reson Med 69(2):583–593CrossRefPubMed
17.
18.
go back to reference Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TE, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang Y, De Stefano N, Brady JM, Matthews PM (2004) Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage 23:S208–S219CrossRefPubMed Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TE, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang Y, De Stefano N, Brady JM, Matthews PM (2004) Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage 23:S208–S219CrossRefPubMed
19.
go back to reference Andersson JLR, Sotiropoulos SN (2016) An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. NeuroImage 125:1063–1078CrossRefPubMedPubMedCentral Andersson JLR, Sotiropoulos SN (2016) An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. NeuroImage 125:1063–1078CrossRefPubMedPubMedCentral
20.
go back to reference Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, Kiefer B, Haase A (2002) Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 47(6):1202–1210CrossRefPubMed Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, Kiefer B, Haase A (2002) Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 47(6):1202–1210CrossRefPubMed
21.
go back to reference Jones DK, Horsfield MA, Simmons A (1999) Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging. Magn Reson Med 42(3):515–525CrossRefPubMed Jones DK, Horsfield MA, Simmons A (1999) Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging. Magn Reson Med 42(3):515–525CrossRefPubMed
22.
go back to reference Andersson JLR, Skare S, Ashburner J (2003) How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. NeuroImage 20:870–888CrossRefPubMed Andersson JLR, Skare S, Ashburner J (2003) How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. NeuroImage 20:870–888CrossRefPubMed
23.
go back to reference Mugler JP, Brookeman JR (1990) Three-dimensional magnetization-prepared rapid gradient-echo imaging (3D MP RAGE). Magn Reson Med 15(1):152–157CrossRefPubMed Mugler JP, Brookeman JR (1990) Three-dimensional magnetization-prepared rapid gradient-echo imaging (3D MP RAGE). Magn Reson Med 15(1):152–157CrossRefPubMed
24.
go back to reference Deichmann R, Good CD, Josephs O, Ashburner J, Turner R (2000) Optimization of 3-D MP-RAGE sequences for structural brain imaging. NeuroImage 12(1):112–127CrossRefPubMed Deichmann R, Good CD, Josephs O, Ashburner J, Turner R (2000) Optimization of 3-D MP-RAGE sequences for structural brain imaging. NeuroImage 12(1):112–127CrossRefPubMed
26.
go back to reference Deichmann R (2006) Fast structural brain imaging using an MDEFT sequence with a FLASH–EPI hybrid readout. NeuroImage 33(4):1066–1071CrossRefPubMed Deichmann R (2006) Fast structural brain imaging using an MDEFT sequence with a FLASH–EPI hybrid readout. NeuroImage 33(4):1066–1071CrossRefPubMed
27.
28.
go back to reference Nöth U, Shrestha M, Schüre JR, Deichmann R (2017) Quantitative in vivo T2 mapping using fast spin echo techniques-a linear correction procedure. NeuroImage 157:476–485CrossRefPubMed Nöth U, Shrestha M, Schüre JR, Deichmann R (2017) Quantitative in vivo T2 mapping using fast spin echo techniques-a linear correction procedure. NeuroImage 157:476–485CrossRefPubMed
29.
go back to reference Feinberg DA, Moeller S, Smith SM, Auerbach E, Ramanna S, Gunther M, Glasser MF, Miller KL, Ugurbil K, Yacoub E (2010) Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging. PLoS One 5(12):e15710CrossRefPubMedPubMedCentral Feinberg DA, Moeller S, Smith SM, Auerbach E, Ramanna S, Gunther M, Glasser MF, Miller KL, Ugurbil K, Yacoub E (2010) Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging. PLoS One 5(12):e15710CrossRefPubMedPubMedCentral
30.
go back to reference Spees WM, Buhl N, Sun P, Ackerman JJ, Neil JJ, Garbow JR (2011) Quantification and compensation of eddy-current-induced magnetic-field gradients. J Magn Reson 212(1):116–123CrossRefPubMedPubMedCentral Spees WM, Buhl N, Sun P, Ackerman JJ, Neil JJ, Garbow JR (2011) Quantification and compensation of eddy-current-induced magnetic-field gradients. J Magn Reson 212(1):116–123CrossRefPubMedPubMedCentral
31.
go back to reference Mohammadi S, Möller HE, Kugel H, Müller DK, Deppe M (2010) Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magn Reson Med 64(4):1047–1056CrossRefPubMed Mohammadi S, Möller HE, Kugel H, Müller DK, Deppe M (2010) Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magn Reson Med 64(4):1047–1056CrossRefPubMed
32.
go back to reference Horsfield MA (1999) Mapping eddy current induced fields for the correction of diffusion-weighted echo planar images. Magn Reson Imaging 17(9):1335–1345CrossRefPubMed Horsfield MA (1999) Mapping eddy current induced fields for the correction of diffusion-weighted echo planar images. Magn Reson Imaging 17(9):1335–1345CrossRefPubMed
Metadata
Title
Optimization of diffusion-weighted single-refocused spin-echo EPI by reducing eddy-current artifacts and shortening the echo time
Authors
Manoj Shrestha
Pavel Hok
Ulrike Nöth
Bianca Lienerth
Ralf Deichmann
Publication date
01-10-2018
Publisher
Springer International Publishing
Published in
Magnetic Resonance Materials in Physics, Biology and Medicine / Issue 5/2018
Print ISSN: 0968-5243
Electronic ISSN: 1352-8661
DOI
https://doi.org/10.1007/s10334-018-0684-x

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