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Published in: Archives of Virology 3/2020

01-03-2020 | Annotated Sequence Record

Molecular characterization of two previously undescribed begomovirus-associated alphasatellite molecules infecting malvaceous species in Cameroon

Authors: W. N. Leke, A. Kvarnheden, S. Avelar, J. K. Brown

Published in: Archives of Virology | Issue 3/2020

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Abstract

Two begomovirus-associated alphasatellites were isolated from okra and a malvastrum plant (Malvaceae) in Cameroon. The complete nucleotide sequences of the okra- and malvastrum-infecting alphasatellites were 1375 and 1416–1418 nucleotides, respectively, and both exhibited features characteristic of other alphasatellites. Based on pairwise sequence comparisons, these previously undescribed alphasatellites are members of distinct species in the genera Colecusatellite and Gosmusatellite and have been tentatively named “pepper yellow vein Mali alphasatellite” and “cotton leaf curl Gezira alphasatellite3”, respectively. Taken together with previous studies, alphasatellites endemic to Cameroon appear to be more diverse and infect plants of many more species and families than currently recognized.
Literature
1.
go back to reference Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β; a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318CrossRef Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β; a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318CrossRef
3.
go back to reference Brown JK (2010) Bemisia: phylogenetic biology of the Bemisia tabaci sibling species group. In: Stansly PA, Naranjo SE (eds) Bemisia: bionomics and management of a global pest. Springer, Netherlands, p 350 Brown JK (2010) Bemisia: phylogenetic biology of the Bemisia tabaci sibling species group. In: Stansly PA, Naranjo SE (eds) Bemisia: bionomics and management of a global pest. Springer, Netherlands, p 350
4.
go back to reference Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris AM, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRef Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris AM, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRef
5.
go back to reference Bull SE, Briddon RW, Markham PG (2003) Universal primers for the PCR-mediated amplification of DNA 1: A satellite-like molecule associated with begomovirus DNA-β complexes. Mol Biotechnol 23:83–86CrossRef Bull SE, Briddon RW, Markham PG (2003) Universal primers for the PCR-mediated amplification of DNA 1: A satellite-like molecule associated with begomovirus DNA-β complexes. Mol Biotechnol 23:83–86CrossRef
6.
go back to reference Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797CrossRef Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797CrossRef
7.
go back to reference Fiallo-Olivé E, Hamed A, Navas-Castillo J, Moriones E (2013) Cotton leaf curl Gezira alphasatellite associated with tomato leaf curl Sudan virus approaches the expected upper size limit in the evolution of alphasatellites. Virus Res 178:506–510CrossRef Fiallo-Olivé E, Hamed A, Navas-Castillo J, Moriones E (2013) Cotton leaf curl Gezira alphasatellite associated with tomato leaf curl Sudan virus approaches the expected upper size limit in the evolution of alphasatellites. Virus Res 178:506–510CrossRef
8.
go back to reference Idris AM, Shahid MS, Briddon RW, Khan AJ, Zhu JK, Brown JK (2011) An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation. J Gen Virol 92:706–717CrossRef Idris AM, Shahid MS, Briddon RW, Khan AJ, Zhu JK, Brown JK (2011) An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation. J Gen Virol 92:706–717CrossRef
9.
go back to reference Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J Virol Methods 116:209–211CrossRef Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J Virol Methods 116:209–211CrossRef
10.
go back to reference Leke WN, Kvarnheden A, Ngane EB, Titanji VPK, Brown JK (2011) Molecular characterization of a new begomovirus and divergent alphasatellite from tomato in Cameroon. Arch Virol 156:925–928CrossRef Leke WN, Kvarnheden A, Ngane EB, Titanji VPK, Brown JK (2011) Molecular characterization of a new begomovirus and divergent alphasatellite from tomato in Cameroon. Arch Virol 156:925–928CrossRef
11.
go back to reference Leke WN, Brown JK, Ligthart ME, Sattar N, Njualem DK, Kvarnheden A (2012) Ageratum conyzoides: a host to a unique begomovirus disease complex in Cameroon. Virus Res 163:229–237CrossRef Leke WN, Brown JK, Ligthart ME, Sattar N, Njualem DK, Kvarnheden A (2012) Ageratum conyzoides: a host to a unique begomovirus disease complex in Cameroon. Virus Res 163:229–237CrossRef
12.
go back to reference Leke WN, Sattar MN, Ngane EB, Ngeve JM, Kvarnheden A, Brown JK (2013) Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon. Virus Res 174:116–125CrossRef Leke WN, Sattar MN, Ngane EB, Ngeve JM, Kvarnheden A, Brown JK (2013) Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon. Virus Res 174:116–125CrossRef
13.
go back to reference Mar TB, Mendes IR, Lau D, Fiallo-Olivé E, Navas-Castillo I, Alves MS, Murilo-Zerbini F (2017) Interaction between the New World begomovirus Euphorbia yellow mosaic virus and its associated alphasatellite: effects on infection and transmission by the whitefly Bemisia tabaci. J Gen Virol 98:1552–1562CrossRef Mar TB, Mendes IR, Lau D, Fiallo-Olivé E, Navas-Castillo I, Alves MS, Murilo-Zerbini F (2017) Interaction between the New World begomovirus Euphorbia yellow mosaic virus and its associated alphasatellite: effects on infection and transmission by the whitefly Bemisia tabaci. J Gen Virol 98:1552–1562CrossRef
14.
go back to reference Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef
15.
go back to reference Muhire B, Martin DP, Brown JK, Navas-Castillo JEM, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424CrossRef Muhire B, Martin DP, Brown JK, Navas-Castillo JEM, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424CrossRef
16.
go back to reference Ndunguru J, Tayor NJ, Yadav J, Aly H, Legg JP, Aveling T, Thompson G, Fauquet CM (2005) Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virol J 2:45CrossRef Ndunguru J, Tayor NJ, Yadav J, Aly H, Legg JP, Aveling T, Thompson G, Fauquet CM (2005) Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virol J 2:45CrossRef
17.
go back to reference Owor BE, Shepherd DN, Taylor NJ, Edema R, Monjane AL, Thomson JA, Martin DP, Varsani A (2007) Successful application of FTA® Classic Card technology and use of bacteriophage Φ29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods 140:100–105CrossRef Owor BE, Shepherd DN, Taylor NJ, Edema R, Monjane AL, Thomson JA, Martin DP, Varsani A (2007) Successful application of FTA® Classic Card technology and use of bacteriophage Φ29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods 140:100–105CrossRef
18.
go back to reference Rojas MR, Macedo MA, Maliano MR, Aguilar MS, Souza JO, Briddon RW, Kenyon L, Bustamante RFR, Zerbini FM, Adkins S, Legg JP, Kvarnheden A, Wintermantel WM, Sudarshana MR, Peterschmitt M, Lapidot M, Martin DP, Moriones E, Inoue-Nagata AK, Gilbertson RL (2018) World management of geminiviruses. Annu Rev Phytopathol 56:637–677CrossRef Rojas MR, Macedo MA, Maliano MR, Aguilar MS, Souza JO, Briddon RW, Kenyon L, Bustamante RFR, Zerbini FM, Adkins S, Legg JP, Kvarnheden A, Wintermantel WM, Sudarshana MR, Peterschmitt M, Lapidot M, Martin DP, Moriones E, Inoue-Nagata AK, Gilbertson RL (2018) World management of geminiviruses. Annu Rev Phytopathol 56:637–677CrossRef
19.
go back to reference Tamura K, Glen S, Daniel P, Alan F, Sudhir K (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef Tamura K, Glen S, Daniel P, Alan F, Sudhir K (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef
20.
go back to reference Tiendrébéogo F, Lefeuvre P, Hoareau M, Villemot J, Konate G, Traoré AS, Barro N, Traoré VS, Reynaud B, Traoré O, Lett JM (2010) Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso. Virol J 7:48CrossRef Tiendrébéogo F, Lefeuvre P, Hoareau M, Villemot J, Konate G, Traoré AS, Barro N, Traoré VS, Reynaud B, Traoré O, Lett JM (2010) Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso. Virol J 7:48CrossRef
21.
go back to reference Wyatt SD, Brown JK (1996) Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef Wyatt SD, Brown JK (1996) Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef
Metadata
Title
Molecular characterization of two previously undescribed begomovirus-associated alphasatellite molecules infecting malvaceous species in Cameroon
Authors
W. N. Leke
A. Kvarnheden
S. Avelar
J. K. Brown
Publication date
01-03-2020
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2020
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-020-04523-8

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