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Published in: Archives of Virology 8/2019

01-08-2019 | Brief Report

Phylogenetic analysis of novel posaviruses detected in feces of Japanese pigs with posaviruses and posa-like viruses of vertebrates and invertebrates

Authors: Hiroshi Aoki, Fujiko Sunaga, Hideharu Ochiai, Tsuneyuki Masuda, Mika Ito, Masataka Akagami, Yuki Naoi, Kaori Sano, Yukie Katayama, Tsutomu Omatsu, Mami Oba, Shoichi Sakaguchi, Tetsuya Furuya, Yoshinao Ouchi, Junsuke Shirai, Tetsuya Mizutani, Tomoichiro Oka, Makoto Nagai

Published in: Archives of Virology | Issue 8/2019

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Abstract

Posaviruses and posa-like viruses are unclassified viruses with sequence similarity to viruses of the order Picornavirales. They have been reported in various vertebrates and invertebrates. We identified 11 posavirus-like sequences in porcine feces and performed phylogenic analysis. Previously reported Japanese posaviruses and those identified in this study clustered with posavirus 1, 4, and 7 and husavirus 1, while five viruses branched into three independent lineages, tentatively named posavirus 10, 11, and 12. Interestingly, posaviruses, except for posavirus 8 and 9, husaviruses, and rasaviruses, formed a cluster consisting of viruses only from pigs, humans, and rats, while posavirus 8 and 9, fisavirus, and basaviruses clustered with posa-like viruses from invertebrates.
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Literature
4.
go back to reference Zhang B, Tang C, Yue H, Ren Y, Song Z (2014) Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China. J Gen Virol 95:1603–1611CrossRefPubMed Zhang B, Tang C, Yue H, Ren Y, Song Z (2014) Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China. J Gen Virol 95:1603–1611CrossRefPubMed
7.
go back to reference Sano K, Naoi Y, Kishimoto M, Masuda T, Tanabe H, Ito M, Niira K, Haga K, Asano K, Tsuchiaka S, Omatsu T, Furuya T, Katayama Y, Oba M, Ouchi Y, Yamasato H, Ishida M, Shirai J, Katayama K, Mizutani T, Nagai M (2016) Identification of further diversity among posaviruses. Arch Virol 161:3541–3548CrossRefPubMed Sano K, Naoi Y, Kishimoto M, Masuda T, Tanabe H, Ito M, Niira K, Haga K, Asano K, Tsuchiaka S, Omatsu T, Furuya T, Katayama Y, Oba M, Ouchi Y, Yamasato H, Ishida M, Shirai J, Katayama K, Mizutani T, Nagai M (2016) Identification of further diversity among posaviruses. Arch Virol 161:3541–3548CrossRefPubMed
8.
go back to reference Oude Munnink BB, Cotten M, Deijs M, Jebbink MF, Bakker M, Farsani SM, Canuti M, Kellam P, van der Hoek L (2015) A novel genus in the order Picornavirales detected in human stool. J Gen Virol 96:3440–3443CrossRefPubMed Oude Munnink BB, Cotten M, Deijs M, Jebbink MF, Bakker M, Farsani SM, Canuti M, Kellam P, van der Hoek L (2015) A novel genus in the order Picornavirales detected in human stool. J Gen Virol 96:3440–3443CrossRefPubMed
16.
go back to reference Nagai M, Omatsu T, Aoki H, Otomaru K, Uto T, Koizumi M, Minami-Fukuda F, Takai H, Murakami T, Masuda T, Yamasato H, Shiokawa M, Tsuchiaka S, Naoi Y, Sano K, Okazaki S, Katayama Y, Oba M, Furuya T, Shirai J, Mizutani T (2015) Full genome analysis of bovine astrovirus from fecal samples of cattle in Japan: identification of possible interspecies transmission of bovine astrovirus. Arch Virol 160:2491–2501. https://doi.org/10.1007/s00705-015-2543-7 CrossRefPubMed Nagai M, Omatsu T, Aoki H, Otomaru K, Uto T, Koizumi M, Minami-Fukuda F, Takai H, Murakami T, Masuda T, Yamasato H, Shiokawa M, Tsuchiaka S, Naoi Y, Sano K, Okazaki S, Katayama Y, Oba M, Furuya T, Shirai J, Mizutani T (2015) Full genome analysis of bovine astrovirus from fecal samples of cattle in Japan: identification of possible interspecies transmission of bovine astrovirus. Arch Virol 160:2491–2501. https://​doi.​org/​10.​1007/​s00705-015-2543-7 CrossRefPubMed
20.
go back to reference Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882CrossRefPubMedPubMedCentral Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882CrossRefPubMedPubMedCentral
21.
22.
go back to reference Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791CrossRefPubMed Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791CrossRefPubMed
Metadata
Title
Phylogenetic analysis of novel posaviruses detected in feces of Japanese pigs with posaviruses and posa-like viruses of vertebrates and invertebrates
Authors
Hiroshi Aoki
Fujiko Sunaga
Hideharu Ochiai
Tsuneyuki Masuda
Mika Ito
Masataka Akagami
Yuki Naoi
Kaori Sano
Yukie Katayama
Tsutomu Omatsu
Mami Oba
Shoichi Sakaguchi
Tetsuya Furuya
Yoshinao Ouchi
Junsuke Shirai
Tetsuya Mizutani
Tomoichiro Oka
Makoto Nagai
Publication date
01-08-2019
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2019
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-019-04289-8

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