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Published in: Archives of Virology 10/2018

01-10-2018 | Annotated Sequence Record

Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida

Authors: H. A. Al-Aqeel, Zafar Iqbal, J. E. Polston

Published in: Archives of Virology | Issue 10/2018

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Abstract

The genome of sida golden mottle virus (SiGMoV) (GU997691 and GU997692) isolated from Sida santaremensis Monteiro in Manatee County, Florida, was sequenced and characterized. SiGMoV was determined to be a bipartite virus belonging to the genus Begomovirus with a genome organization typical of the New World viruses in the genus. SiGMoV DNA-A had the highest identity scores (89%) and showed the closest evolutionary relationships to sida golden mosaic Buckup virus (SiGMBuV) (JX162591 and HQ008338). However, SiGMoV DNA-B had the highest identity scores (93%) and showed the closest evolutionary relationship to corchorus yellow spot virus (DQ875869), SiGMBuV (JX162592) and sida golden mosaic Florida virus (SiGMFlV) (HE806443). There was extensive recombination in the SiGMoV DNA-A and much less in DNA-B. Full-length clones of SiGMoV were infectious and were able to infect and cause symptoms in several plant species.
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Literature
1.
go back to reference Arcanjo DDR, Oliveira NNPM, Ferreira-Filho ES, da Costa DA, Chaves MH, Borges ACR, de Oliveira AP, Oliveira RdCM (2011) Vasorelaxant response induced by Sida santaremnensis H. Monteiro ethanol extract on rat superior mesenteric artery. Afr J Biotech 10:14587CrossRef Arcanjo DDR, Oliveira NNPM, Ferreira-Filho ES, da Costa DA, Chaves MH, Borges ACR, de Oliveira AP, Oliveira RdCM (2011) Vasorelaxant response induced by Sida santaremnensis H. Monteiro ethanol extract on rat superior mesenteric artery. Afr J Biotech 10:14587CrossRef
2.
go back to reference Wunderlin RP, Hansen BF, Franck AR, Essig FB (2017) Atlas of florida plants. USF Water Institute, Institute for Systematic Botany, University of South Florida, Tampa Wunderlin RP, Hansen BF, Franck AR, Essig FB (2017) Atlas of florida plants. USF Water Institute, Institute for Systematic Botany, University of South Florida, Tampa
4.
go back to reference Hunter WB, Hiebert E, Webb SE, Tsai JH, Polston JE (1998) Location of geminiviruses in the whitefly Bemisia tabaci (Homoptera: Aleyrodidae). Plant Dis 82:1147–1151CrossRefPubMed Hunter WB, Hiebert E, Webb SE, Tsai JH, Polston JE (1998) Location of geminiviruses in the whitefly Bemisia tabaci (Homoptera: Aleyrodidae). Plant Dis 82:1147–1151CrossRefPubMed
5.
go back to reference Costa A (1965) Three whitefly-transmitted virus diseases of beans in São Paulo, Brazil. FAO Plant Prot Bull 13:1–12 Costa A (1965) Three whitefly-transmitted virus diseases of beans in São Paulo, Brazil. FAO Plant Prot Bull 13:1–12
6.
go back to reference Costa AS, Carvalho AM (1960) Comparative studies between Abutilon and Euphorbia mosaic viruses. Phytopath Z 38:129–152CrossRef Costa AS, Carvalho AM (1960) Comparative studies between Abutilon and Euphorbia mosaic viruses. Phytopath Z 38:129–152CrossRef
7.
go back to reference Höfer P, Engel M, Jeske H, Frischmuth T (1997) Nucleotide sequence of a new bipartite geminivirus isolated from the common weed Sida rhombifolia in Costa Rica. J Gen Virol 78:1785–1790CrossRefPubMed Höfer P, Engel M, Jeske H, Frischmuth T (1997) Nucleotide sequence of a new bipartite geminivirus isolated from the common weed Sida rhombifolia in Costa Rica. J Gen Virol 78:1785–1790CrossRefPubMed
9.
go back to reference Fiallo-Olivé E, Martínez-Zubiaur Y, Moriones E, Navas-Castillo J (2010) Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Arch Virol 155:1535–1537CrossRefPubMed Fiallo-Olivé E, Martínez-Zubiaur Y, Moriones E, Navas-Castillo J (2010) Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Arch Virol 155:1535–1537CrossRefPubMed
10.
go back to reference Stewart C, Kon T, Gilbertson R, Roye M (2011) First report of the complete sequence of Sida golden yellow vein virus from Jamaica. Arch Virol 156:1481–1484CrossRefPubMed Stewart C, Kon T, Gilbertson R, Roye M (2011) First report of the complete sequence of Sida golden yellow vein virus from Jamaica. Arch Virol 156:1481–1484CrossRefPubMed
11.
go back to reference Fernandes F, Albuquerque L, de Oliveira C, Cruz A, da Rocha W, Pereira T, Naito F, Dias Nd, Nagata T, Faria J, Zerbini F, Aragão F, Inoue-Nagata A (2011) Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants. Arch Virol 156:2063–2069CrossRefPubMed Fernandes F, Albuquerque L, de Oliveira C, Cruz A, da Rocha W, Pereira T, Naito F, Dias Nd, Nagata T, Faria J, Zerbini F, Aragão F, Inoue-Nagata A (2011) Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants. Arch Virol 156:2063–2069CrossRefPubMed
12.
go back to reference Barreto SS, Hallwass M, Aquino OM, Inoue-Nagata AK (2013) A study of weeds as potential inoculum sources for a tomato-infecting begomovirus in central Brazil. Phytopathology 103:436–444CrossRefPubMed Barreto SS, Hallwass M, Aquino OM, Inoue-Nagata AK (2013) A study of weeds as potential inoculum sources for a tomato-infecting begomovirus in central Brazil. Phytopathology 103:436–444CrossRefPubMed
13.
go back to reference Tavares SS, Ramos-Sobrinho R, González-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Daninha 30:305–315CrossRef Tavares SS, Ramos-Sobrinho R, González-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Daninha 30:305–315CrossRef
14.
go back to reference Lefeuvre P, Moriones E (2015) Recombination as a motor of host switches and virus emergence: geminiviruses as case studies. Curr Opin Virol 10:14–19CrossRefPubMed Lefeuvre P, Moriones E (2015) Recombination as a motor of host switches and virus emergence: geminiviruses as case studies. Curr Opin Virol 10:14–19CrossRefPubMed
15.
go back to reference Rocha CS, Castillo-Urquiza GP, Lima AT, Silva FN, Xavier CA, Hora-Júnior BT, Beserra-Júnior JE, Malta AW, Martin DP, Varsani A (2013) Brazilian begomovirus populations are highly recombinant, rapidly evolving, and segregated based on geographical location. J Virol 87:5784–5799CrossRefPubMedPubMedCentral Rocha CS, Castillo-Urquiza GP, Lima AT, Silva FN, Xavier CA, Hora-Júnior BT, Beserra-Júnior JE, Malta AW, Martin DP, Varsani A (2013) Brazilian begomovirus populations are highly recombinant, rapidly evolving, and segregated based on geographical location. J Virol 87:5784–5799CrossRefPubMedPubMedCentral
16.
go back to reference Silva FN, Lima ATM, Rocha CS, Castillo-Urquiza GP, Alves-Júnior M, Zerbini FM (2014) Recombination and pseudorecombination driving the evolution of the begomoviruses Tomato severe rugose virus (ToSRV) and Tomato rugose mosaic virus (ToRMV): two recombinant DNA-A components sharing the same DNA-B. Virol J 11:66CrossRefPubMedPubMedCentral Silva FN, Lima ATM, Rocha CS, Castillo-Urquiza GP, Alves-Júnior M, Zerbini FM (2014) Recombination and pseudorecombination driving the evolution of the begomoviruses Tomato severe rugose virus (ToSRV) and Tomato rugose mosaic virus (ToRMV): two recombinant DNA-A components sharing the same DNA-B. Virol J 11:66CrossRefPubMedPubMedCentral
17.
go back to reference Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15 Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15
18.
go back to reference Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef
19.
go back to reference Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821CrossRefPubMed Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821CrossRefPubMed
20.
go back to reference Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed
21.
go back to reference Muhire BM, Varsani A, Martin DP (2014) SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral Muhire BM, Varsani A, Martin DP (2014) SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral
23.
go back to reference Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526PubMed Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526PubMed
24.
25.
go back to reference Stewart C, Kon T, Rojas M, Graham A, Martin D, Gilbertson R, Roye M (2014) The molecular characterisation of a Sida-infecting begomovirus from Jamaica. Arch Virol 159:375–378CrossRefPubMed Stewart C, Kon T, Rojas M, Graham A, Martin D, Gilbertson R, Roye M (2014) The molecular characterisation of a Sida-infecting begomovirus from Jamaica. Arch Virol 159:375–378CrossRefPubMed
26.
go back to reference Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico. Virus Genes 35:369–377CrossRefPubMed Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico. Virus Genes 35:369–377CrossRefPubMed
27.
go back to reference Jeske H, Kober S, Schäfer B, Strohmeier S (2014) Circomics of Cuban geminiviruses reveals the first alpha-satellite DNA in the Caribbean. Virus Genes 49:312–324CrossRefPubMed Jeske H, Kober S, Schäfer B, Strohmeier S (2014) Circomics of Cuban geminiviruses reveals the first alpha-satellite DNA in the Caribbean. Virus Genes 49:312–324CrossRefPubMed
28.
go back to reference Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:1–5CrossRef Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:1–5CrossRef
29.
go back to reference Guenoune-Gelbart D, Sufrin-Ringwald T, Capobianco H, Gaba V, Polston JE, Lapidot M (2010) Inoculation of plants with begomoviruses by particle bombardment without cloning: using rolling circle amplification of total DNA from infected plants and whiteflies. J Virol Methods 168:87–93CrossRefPubMed Guenoune-Gelbart D, Sufrin-Ringwald T, Capobianco H, Gaba V, Polston JE, Lapidot M (2010) Inoculation of plants with begomoviruses by particle bombardment without cloning: using rolling circle amplification of total DNA from infected plants and whiteflies. J Virol Methods 168:87–93CrossRefPubMed
30.
go back to reference Polston JE, McGovern RJ, Brown LG (1999) Introduction of tomato yellow leaf curl virus in Florida and implications for the spread of this and other geminiviruses of tomato. Plant Dis 83:984–988CrossRefPubMed Polston JE, McGovern RJ, Brown LG (1999) Introduction of tomato yellow leaf curl virus in Florida and implications for the spread of this and other geminiviruses of tomato. Plant Dis 83:984–988CrossRefPubMed
31.
go back to reference Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JF, Fiallo-Olivé E, Briddon RW, Hernández-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JF, Fiallo-Olivé E, Briddon RW, Hernández-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed
Metadata
Title
Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida
Authors
H. A. Al-Aqeel
Zafar Iqbal
J. E. Polston
Publication date
01-10-2018
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 10/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-3903-x

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