Skip to main content
Top
Published in: Archives of Virology 11/2011

01-11-2011 | Brief Report

Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants

Authors: Fernanda R. Fernandes, Leonardo C. Albuquerque, Cristiane L. de Oliveira, Andréa R. R. Cruz, Wesley B. da Rocha, Talita G. Pereira, Fernanda Y. B. Naito, Natália de M. Dias, Tatsuya Nagata, Josias C. Faria, Francisco M. Zerbini, Francisco J. L. Aragão, Alice K. Inoue-Nagata

Published in: Archives of Virology | Issue 11/2011

Login to get access

Abstract

To date, no begomovirus has been fully characterized from Euphorbia heterophylla, a widely distributed weed, in Brazil. Here, we show the occurrence of a new begomovirus on E. heterophylla plants showing bright yellow mosaic. The bipartite viral genome was cloned from 10 samples, and all clones are almost identical to each other (95.6-98.8% nucleotide sequence identity). The DNA-A sequences shared a maximum nucleotide sequence identity of 87.3% with euphorbia mosaic Peru virus (EuMPV) and thus were classified as belonging to a novel begomovirus species, tentatively named Euphorbia yellow mosaic virus (EuYMV). The EuYMV DNA-B sequences share a maximum nucleotide sequence identity of 56.2% with a euphorbia mosaic virus (EuMV) isolate from Mexico. Phylogenetic analysis demonstrated that this new virus belongs to a different lineage than EuMV isolates from Central America.
Appendix
Available only for authorised users
Literature
1.
go back to reference Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed
2.
go back to reference Bezerra-Agasie ICF, Barros G, Ávila AC, Inoue-Nagata AK (2006) First report of Tomato severe rugose virus in chilli pepper in Brasil. Plant Dis 90:114CrossRef Bezerra-Agasie ICF, Barros G, Ávila AC, Inoue-Nagata AK (2006) First report of Tomato severe rugose virus in chilli pepper in Brasil. Plant Dis 90:114CrossRef
3.
go back to reference Bird J, Sánchez J (1971) Whitefly-transmitted viruses in Puerto Rico. J Agric Univ Puerto Rico 55:461–467 Bird J, Sánchez J (1971) Whitefly-transmitted viruses in Puerto Rico. J Agric Univ Puerto Rico 55:461–467
4.
go back to reference Bird J, Sánchez J, Rodríguez RL, Juliá FJ (1975) Rugaceous (whitefly-transmitted) viruses in Puerto Rico. In: Bird J, Maramorosch K (eds) Tropical diseases of legumes. Academic Press, New York, pp 3–25 Bird J, Sánchez J, Rodríguez RL, Juliá FJ (1975) Rugaceous (whitefly-transmitted) viruses in Puerto Rico. In: Bird J, Maramorosch K (eds) Tropical diseases of legumes. Academic Press, New York, pp 3–25
5.
go back to reference Bridges DC, Brecke BJ, Barbour JC (1992) Wild poinsettia (Euphorbia heterophylla) interference with peanut (Arachis hypogaea). Weed Sci 40:37–42 Bridges DC, Brecke BJ, Barbour JC (1992) Wild poinsettia (Euphorbia heterophylla) interference with peanut (Arachis hypogaea). Weed Sci 40:37–42
6.
go back to reference Collins AM, Brown JK, Rehman MM, Roye ME (2009) Complete nucleotide sequence of an isolate of Euphorbia mosaic virus that infects Euphorbia heterophylla and Wissadula amplissima in Jamaica. Arch Virol 154:1859–1860PubMedCrossRef Collins AM, Brown JK, Rehman MM, Roye ME (2009) Complete nucleotide sequence of an isolate of Euphorbia mosaic virus that infects Euphorbia heterophylla and Wissadula amplissima in Jamaica. Arch Virol 154:1859–1860PubMedCrossRef
7.
go back to reference Costa AS, Bennett CW (1950) Whitefly transmitted mosaic of Euphorbia prunifolia. Phytopathology 40:266–283 Costa AS, Bennett CW (1950) Whitefly transmitted mosaic of Euphorbia prunifolia. Phytopathology 40:266–283
8.
go back to reference Costa AS (1955) Studies on Abutilon mosaic in Brazil. Phytopathologische Zeitschrift 24:97–112 Costa AS (1955) Studies on Abutilon mosaic in Brazil. Phytopathologische Zeitschrift 24:97–112
9.
go back to reference Cronquist A (1981) An integrated system of classification of flowering plants. Columbia University Press, New York Cronquist A (1981) An integrated system of classification of flowering plants. Columbia University Press, New York
10.
go back to reference Debrot E, Centeno F (1986) Ocurrencia del virus mosaico de las euforbiáceas infectando a Euphorbia heterophylla L. en Venezuela. Agron Trop 35:5–12 Debrot E, Centeno F (1986) Ocurrencia del virus mosaico de las euforbiáceas infectando a Euphorbia heterophylla L. en Venezuela. Agron Trop 35:5–12
11.
go back to reference Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull 19:11–15 Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull 19:11–15
12.
go back to reference Faria JC, Maxwell DP (1999) Variability in geminivirus isolates associated with Phaseolus spp. in Brazil. Phytopathology 89:262–268PubMedCrossRef Faria JC, Maxwell DP (1999) Variability in geminivirus isolates associated with Phaseolus spp. in Brazil. Phytopathology 89:262–268PubMedCrossRef
13.
go back to reference Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini FM, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821PubMedCrossRef Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini FM, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821PubMedCrossRef
14.
go back to reference Fernandes FR, Albuquerque LC, Giordano LDB, Boiteux LS, de Avila AC, Inoue-Nagata AK (2008) Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Virus Genes 36:251–258PubMedCrossRef Fernandes FR, Albuquerque LC, Giordano LDB, Boiteux LS, de Avila AC, Inoue-Nagata AK (2008) Diversity and prevalence of Brazilian bipartite begomovirus species associated to tomatoes. Virus Genes 36:251–258PubMedCrossRef
15.
go back to reference Gregorio-Jorge J, Bernal-Alcocer A, Bañuelos-Hernández B, Alpuche-Solís AG, Hernández-Zepeda C, Moreno-Valenzuela O, Frías-Treviño G, Argüello-Astorga GR (2010) Analysis of a new strain of Euphorbia mosaic virus with distinct replication specificity unveils a lineage of begomoviruses with short Rep sequences in the DNA-B intergenic region. Virol J 7:275–290PubMedCrossRef Gregorio-Jorge J, Bernal-Alcocer A, Bañuelos-Hernández B, Alpuche-Solís AG, Hernández-Zepeda C, Moreno-Valenzuela O, Frías-Treviño G, Argüello-Astorga GR (2010) Analysis of a new strain of Euphorbia mosaic virus with distinct replication specificity unveils a lineage of begomoviruses with short Rep sequences in the DNA-B intergenic region. Virol J 7:275–290PubMedCrossRef
16.
go back to reference Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and experimental host range of Euphorbia mosaic virus-Yucatan Peninsula, a begomovirus species in the Squash leaf curl virus clade. Plant Pathol 56:763–770CrossRef Hernández-Zepeda C, Idris AM, Carnevali G, Brown JK, Moreno-Valenzuela OA (2007) Molecular characterization and experimental host range of Euphorbia mosaic virus-Yucatan Peninsula, a begomovirus species in the Squash leaf curl virus clade. Plant Pathol 56:763–770CrossRef
17.
go back to reference Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189–191PubMed Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189–191PubMed
18.
go back to reference Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef
19.
go back to reference Lima LHC, Campos L, Moretzsohn MC, Návia D, Oliveira MRV (2002) Genetic diversity of Bemisia tabaci (Genn.) populations in Brazil revealed by RAPD markers. Genet Mol Biol 25:217–223CrossRef Lima LHC, Campos L, Moretzsohn MC, Návia D, Oliveira MRV (2002) Genetic diversity of Bemisia tabaci (Genn.) populations in Brazil revealed by RAPD markers. Genet Mol Biol 25:217–223CrossRef
20.
go back to reference Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463PubMedCrossRef Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463PubMedCrossRef
21.
go back to reference Morales FJ (2006) History and current distribution of begomoviruses in Latin America. Adv Virus Res 67:127–162PubMedCrossRef Morales FJ (2006) History and current distribution of begomoviruses in Latin America. Adv Virus Res 67:127–162PubMedCrossRef
22.
go back to reference Paplomatas EJ, Patel VP, Hou YM, Noueiry AO, Gilbertson RL (1994) Molecular characterization of a new sap-transmissible bipartite genome geminivirus infecting tomatoes in Mexico. Phytopathology 84:1215–1224CrossRef Paplomatas EJ, Patel VP, Hou YM, Noueiry AO, Gilbertson RL (1994) Molecular characterization of a new sap-transmissible bipartite genome geminivirus infecting tomatoes in Mexico. Phytopathology 84:1215–1224CrossRef
23.
go back to reference Paprotka T, Metzler V, Jeske H (2010) The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections. Virology 404:148–157PubMedCrossRef Paprotka T, Metzler V, Jeske H (2010) The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections. Virology 404:148–157PubMedCrossRef
24.
go back to reference Ribeiro SG, Ambrozevicius LP, Ávila AC, Bezerra IC, Calegario RF, Fernandes JJ, Lima MF, Mello RN, Rocha H, Zerbini FM (2003) Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch Virol 148:281–295PubMedCrossRef Ribeiro SG, Ambrozevicius LP, Ávila AC, Bezerra IC, Calegario RF, Fernandes JJ, Lima MF, Mello RN, Rocha H, Zerbini FM (2003) Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Arch Virol 148:281–295PubMedCrossRef
25.
go back to reference Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef
26.
go back to reference Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149:97–102PubMedCrossRef Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149:97–102PubMedCrossRef
27.
go back to reference Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, Rybicki EP, Stenger DC (2005) Family Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy eighth report of the international committee on taxonomy of viruses. Elsevier Academic Press, San Diego, pp 301–326 Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, Rybicki EP, Stenger DC (2005) Family Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy eighth report of the international committee on taxonomy of viruses. Elsevier Academic Press, San Diego, pp 301–326
28.
go back to reference Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef
29.
go back to reference Willard TS, Griffin JL (1993) Soybean (Glycine max) yield and quality responses associated with wild poinsettia (Euphorbia heterophylla) control programs. Weed Technol 7:118–122 Willard TS, Griffin JL (1993) Soybean (Glycine max) yield and quality responses associated with wild poinsettia (Euphorbia heterophylla) control programs. Weed Technol 7:118–122
30.
go back to reference Wilson AK (1981) Euphorbia heterophylla: a review of distribution, importance and control. Trop Pest Manag 27:32–38CrossRef Wilson AK (1981) Euphorbia heterophylla: a review of distribution, importance and control. Trop Pest Manag 27:32–38CrossRef
31.
go back to reference Zerbini FM, Andrade EC, Barros DR, Ferreira SS, Lima ATM, Alfenas PF, Mello RN (2005) Traditional and novel strategies for geminivirus management in Brazil. Australas Plant Pathol 34:475–480CrossRef Zerbini FM, Andrade EC, Barros DR, Ferreira SS, Lima ATM, Alfenas PF, Mello RN (2005) Traditional and novel strategies for geminivirus management in Brazil. Australas Plant Pathol 34:475–480CrossRef
Metadata
Title
Molecular and biological characterization of a new Brazilian begomovirus, euphorbia yellow mosaic virus (EuYMV), infecting Euphorbia heterophylla plants
Authors
Fernanda R. Fernandes
Leonardo C. Albuquerque
Cristiane L. de Oliveira
Andréa R. R. Cruz
Wesley B. da Rocha
Talita G. Pereira
Fernanda Y. B. Naito
Natália de M. Dias
Tatsuya Nagata
Josias C. Faria
Francisco M. Zerbini
Francisco J. L. Aragão
Alice K. Inoue-Nagata
Publication date
01-11-2011
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 11/2011
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1070-4

Other articles of this Issue 11/2011

Archives of Virology 11/2011 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.