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Published in: Archives of Virology 10/2017

01-10-2017 | Brief Report

Co-circulation of three clusters of 793/B-like avian infectious bronchitis virus genotypes in Iranian chicken flocks

Authors: Ali Yousefzadeh Kalokhoran, Arash Ghalyanchilangeroudi, Hossein Hosseini, Omid Madadgar, Vahid Karimi, Masoud Hashemzadeh, Parvaneh Hesari, Mohammad Taha Zabihi Petroudi, Hamideh Najafi

Published in: Archives of Virology | Issue 10/2017

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Abstract

Avian infectious bronchitis (IB) is an acute and highly contagious viral disease causing severe economic losses in the poultry industry. The 793/B IB virus is an important infectious bronchitis virus (IBV) genotype currently circulating in several countries, including Iran. One hundred confirmed IBV samples (between 2014 and 2015; from 15 provinces in Iran) were selected for genotyping based on S1 sequencing. After phylogenetic analysis, it was found that 30% of the IBV isolates belonged to the 793/B genotype. Results showed that the Iranian 793/B-like IBV isolates could be divided in to three clusters: 4/91-like (50%), 1/96-like (40%), and IB88-like (10%). The sequence similarity between Iranian 793/B-like IBV isolates is 87.69%–100%. The highest identity is between the 4/91 and IB88 clusters (96.38%), and the lowest similarity is between the 1/96 and IB88 clusters (87.62%). This study provides a comprehensive analysis of 793/B-type IBV in Iran and characterization of IBV molecular epidemiology in the country.
Literature
1.
go back to reference Aghakhan S, Abshar N, Fereidouni SRN, Marunesi C, Khodashenas M (1994) Studies on avian viral infections in Iran. Arch Razi Ins 44:1–10 Aghakhan S, Abshar N, Fereidouni SRN, Marunesi C, Khodashenas M (1994) Studies on avian viral infections in Iran. Arch Razi Ins 44:1–10
2.
go back to reference Akbari AG, Vasfi MM, Keyvani H (2004) Isolation and identification of infectious bronchitis viruses in poultry farms of Iran. J Vet Res 59:259–264 Akbari AG, Vasfi MM, Keyvani H (2004) Isolation and identification of infectious bronchitis viruses in poultry farms of Iran. J Vet Res 59:259–264
3.
go back to reference Akbari Azad G, Vasfi Marandi M, Keyvani Aminae H (2007) Molecular analysis of three Iranian isolates belonged to 793/B serotype of Infectious bronchitis viruses. J Vet Res 62:69–80 Akbari Azad G, Vasfi Marandi M, Keyvani Aminae H (2007) Molecular analysis of three Iranian isolates belonged to 793/B serotype of Infectious bronchitis viruses. J Vet Res 62:69–80
4.
go back to reference Bochkov YA, Tosi G, Massi P, Drygin VV (2007) Phylogenetic analysis of partial S1 and N gene sequences of infectious bronchitis virus isolates from Italy revealed genetic diversity and recombination. Virus Genes 35:65–71CrossRefPubMed Bochkov YA, Tosi G, Massi P, Drygin VV (2007) Phylogenetic analysis of partial S1 and N gene sequences of infectious bronchitis virus isolates from Italy revealed genetic diversity and recombination. Virus Genes 35:65–71CrossRefPubMed
5.
go back to reference Boursnell M, Brown T, Foulds I, Green P, Tomley F, Binns M (1987) Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. J Gen Virol 68:57–77CrossRefPubMed Boursnell M, Brown T, Foulds I, Green P, Tomley F, Binns M (1987) Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. J Gen Virol 68:57–77CrossRefPubMed
6.
go back to reference Callison SA, Hilt DA, Boynton TO, Sample BF, Robison R, Swayne DE, Jackwood MW (2006) Development and evaluation of a real-time Taqman RT-PCR assay for the detection of infectious bronchitis virus from infected chickens. J Virol Methods 138:60–65CrossRefPubMed Callison SA, Hilt DA, Boynton TO, Sample BF, Robison R, Swayne DE, Jackwood MW (2006) Development and evaluation of a real-time Taqman RT-PCR assay for the detection of infectious bronchitis virus from infected chickens. J Virol Methods 138:60–65CrossRefPubMed
7.
go back to reference Capua I, Minta Z, Karpinska E, Mawditt K, Britton P, Cavanagh D, Gough R (1999) Co-circulation of four types of infectious bronchitis virus (793/B, 624/I, B1648 and Massachusetts). Avian Pathol 28:587–592CrossRef Capua I, Minta Z, Karpinska E, Mawditt K, Britton P, Cavanagh D, Gough R (1999) Co-circulation of four types of infectious bronchitis virus (793/B, 624/I, B1648 and Massachusetts). Avian Pathol 28:587–592CrossRef
8.
go back to reference Casais R, Dove B, Cavanagh D, Britton P (2003) Recombinant avian infectious bronchitis virus expressing a heterologous spike gene demonstrates that the spike protein is a determinant of cell tropism. J Virol 77:9084–9089CrossRefPubMedPubMedCentral Casais R, Dove B, Cavanagh D, Britton P (2003) Recombinant avian infectious bronchitis virus expressing a heterologous spike gene demonstrates that the spike protein is a determinant of cell tropism. J Virol 77:9084–9089CrossRefPubMedPubMedCentral
9.
go back to reference Cavanagh D, Mawditt K, Gough R, Picault J, Britton P (1998) Sequence analysis of strains of the 793/B genotype (CR88, 4/91) of IBV isolated between 1985 and 1997. In: Proceedings of the international symposium on infectious bronchitis and pneumovirus infections in poultry. Rauischholzhausen, Germany, pp 252–256 Cavanagh D, Mawditt K, Gough R, Picault J, Britton P (1998) Sequence analysis of strains of the 793/B genotype (CR88, 4/91) of IBV isolated between 1985 and 1997. In: Proceedings of the international symposium on infectious bronchitis and pneumovirus infections in poultry. Rauischholzhausen, Germany, pp 252–256
10.
go back to reference Cavanagh D, Picault J-P, Gough RE, Hess M, Mawditt K, Britton P (2005) Variation in the spike protein of the 793/B type of infectious bronchitis virus, in the field and during alternate passage in chickens and embryonated eggs. Avian Pathol 34:20–25CrossRefPubMed Cavanagh D, Picault J-P, Gough RE, Hess M, Mawditt K, Britton P (2005) Variation in the spike protein of the 793/B type of infectious bronchitis virus, in the field and during alternate passage in chickens and embryonated eggs. Avian Pathol 34:20–25CrossRefPubMed
11.
go back to reference Cavanagh D, Picault JP, Gough R, Hess M, Mawditt K, Britton P (2005) Variation in the spike protein of the 793/B type of infectious bronchitis virus, in the field and during alternate passage in chickens and embryonated eggs. Avian Pathol J WVPA 34:20–25CrossRef Cavanagh D, Picault JP, Gough R, Hess M, Mawditt K, Britton P (2005) Variation in the spike protein of the 793/B type of infectious bronchitis virus, in the field and during alternate passage in chickens and embryonated eggs. Avian Pathol J WVPA 34:20–25CrossRef
12.
go back to reference Cook J, Orbell S, Woods M, Huggins M (1996) A survey of the presence of a new infectious bronchitis virus designated 4/91 (793B). Vet Rec 138:178–180CrossRefPubMed Cook J, Orbell S, Woods M, Huggins M (1996) A survey of the presence of a new infectious bronchitis virus designated 4/91 (793B). Vet Rec 138:178–180CrossRefPubMed
13.
go back to reference Cook JK, Jackwood M, Jones R (2012) The long view: 40 years of infectious bronchitis research. Avian Pathol 41:239–250CrossRefPubMed Cook JK, Jackwood M, Jones R (2012) The long view: 40 years of infectious bronchitis research. Avian Pathol 41:239–250CrossRefPubMed
14.
go back to reference Dolz R, Pujols J, Ordóñez G, Porta R, Majó N (2008) Molecular epidemiology and evolution of avian infectious bronchitis virus in Spain over a fourteen-year period. Virology 374:50–59CrossRefPubMed Dolz R, Pujols J, Ordóñez G, Porta R, Majó N (2008) Molecular epidemiology and evolution of avian infectious bronchitis virus in Spain over a fourteen-year period. Virology 374:50–59CrossRefPubMed
15.
go back to reference Domańska-Blicharz K, Śmietanka K, Minta Z (2007) Molecular studies on infectious bronchitis virus isolated in Poland. Bull Vet Inst Pulawy 51:449–452 Domańska-Blicharz K, Śmietanka K, Minta Z (2007) Molecular studies on infectious bronchitis virus isolated in Poland. Bull Vet Inst Pulawy 51:449–452
16.
go back to reference Franzo G, Naylor CJ, Lupini C, Drigo M, Catelli E, Listorti V, Pesente P, Giovanardi D, Morandini E, Cecchinato M (2014) Continued use of IBV 793B vaccine needs reassessment after its withdrawal led to the genotype’s disappearance. Vaccine 32:6765–6767CrossRefPubMed Franzo G, Naylor CJ, Lupini C, Drigo M, Catelli E, Listorti V, Pesente P, Giovanardi D, Morandini E, Cecchinato M (2014) Continued use of IBV 793B vaccine needs reassessment after its withdrawal led to the genotype’s disappearance. Vaccine 32:6765–6767CrossRefPubMed
17.
go back to reference Ganapathy K, Ball C, Forrester A (2015) Genotypes of infectious bronchitis viruses circulating in the Middle East between 2009 and 2014. Virus Res 210:198–204CrossRefPubMed Ganapathy K, Ball C, Forrester A (2015) Genotypes of infectious bronchitis viruses circulating in the Middle East between 2009 and 2014. Virus Res 210:198–204CrossRefPubMed
18.
go back to reference Hashemzadeh M, Karimi V, Masoudi S, Shoushtary A, Langeroudi A, Momayez R, Shirazi M, Maghsodloo H, Hasanzadeh R, Eshratabadi F (2013) Phylogenetic study of Iranian infectious bronchitis virus isolates during 2010–2011 using glycoprotein S1 gene. J Vet Res 68:135–141 Hashemzadeh M, Karimi V, Masoudi S, Shoushtary A, Langeroudi A, Momayez R, Shirazi M, Maghsodloo H, Hasanzadeh R, Eshratabadi F (2013) Phylogenetic study of Iranian infectious bronchitis virus isolates during 2010–2011 using glycoprotein S1 gene. J Vet Res 68:135–141
19.
go back to reference Hosseini H, Fard MH, Charkhkar S, Morshed R (2015) Epidemiology of avian infectious bronchitis virus genotypes in Iran (2010-2014). Avian Dis 59:431–435CrossRefPubMed Hosseini H, Fard MH, Charkhkar S, Morshed R (2015) Epidemiology of avian infectious bronchitis virus genotypes in Iran (2010-2014). Avian Dis 59:431–435CrossRefPubMed
21.
go back to reference Mase M, Tsukamoto K, Imai K, Yamaguchi S (2004) Phylogenetic analysis of avian infectious bronchitis virus strains isolated in Japan. Arch Virol 149:2069–2078PubMed Mase M, Tsukamoto K, Imai K, Yamaguchi S (2004) Phylogenetic analysis of avian infectious bronchitis virus strains isolated in Japan. Arch Virol 149:2069–2078PubMed
22.
go back to reference Najafi H, Langeroudi AG, Hashemzadeh M, Karimi V, Madadgar O, Ghafouri SA, Maghsoudlo H, Farahani RK (2016) Molecular characterization of infectious bronchitis viruses isolated from broiler chicken farms in Iran, 2014-2015. Arch Virol 161:53-62CrossRefPubMed Najafi H, Langeroudi AG, Hashemzadeh M, Karimi V, Madadgar O, Ghafouri SA, Maghsoudlo H, Farahani RK (2016) Molecular characterization of infectious bronchitis viruses isolated from broiler chicken farms in Iran, 2014-2015. Arch Virol 161:53-62CrossRefPubMed
23.
go back to reference Najafi H, Ghalyanchi Langeroudi A, Hashemzadeh M, Madadgar O, Karimi V, Farahani RK, Abdollahi H, Maghsoudsloo H, Seifouri P (2016) Pathogenicity characteristics of an Iranian variant-2 (IS-1494) like infectious bronchitis virus in experimentally infected SPF chickens. Acta Virol 60:393–399CrossRefPubMed Najafi H, Ghalyanchi Langeroudi A, Hashemzadeh M, Madadgar O, Karimi V, Farahani RK, Abdollahi H, Maghsoudsloo H, Seifouri P (2016) Pathogenicity characteristics of an Iranian variant-2 (IS-1494) like infectious bronchitis virus in experimentally infected SPF chickens. Acta Virol 60:393–399CrossRefPubMed
24.
go back to reference Najafi H, Ghalyanchi-langeroudi A, Hashemzadeh M, Karimi V, Madadgar O, Khaltabadi Farahani R, Ghafouri SA, Maghsoudloo H, Seifouri P, Madhi A (2017) Pathogenicity study of Iranian genotype of avian infectious bronchitis virus (IR-1). Vet Res Forum 8:35–41PubMedPubMedCentral Najafi H, Ghalyanchi-langeroudi A, Hashemzadeh M, Karimi V, Madadgar O, Khaltabadi Farahani R, Ghafouri SA, Maghsoudloo H, Seifouri P, Madhi A (2017) Pathogenicity study of Iranian genotype of avian infectious bronchitis virus (IR-1). Vet Res Forum 8:35–41PubMedPubMedCentral
25.
go back to reference Pourbakhsh S, Momayez R, Toroghi R, Shoushtari A (2016) Ninetythree B type, the predominant circulating type of avian infectious bronchitis viruses 1999–2004 in Iran: a retrospective study. Arch Razi Inst 63:1–5 Pourbakhsh S, Momayez R, Toroghi R, Shoushtari A (2016) Ninetythree B type, the predominant circulating type of avian infectious bronchitis viruses 1999–2004 in Iran: a retrospective study. Arch Razi Inst 63:1–5
26.
go back to reference Seger W, GhalyanchiLangeroudi A, Karimi V, Madadgar O, Marandi MV, Hashemzadeh M (2016) Genotyping of infectious bronchitis viruses from broiler farms in Iraq during 2014–2015. Arch Virol 161:1229–1237CrossRefPubMed Seger W, GhalyanchiLangeroudi A, Karimi V, Madadgar O, Marandi MV, Hashemzadeh M (2016) Genotyping of infectious bronchitis viruses from broiler farms in Iraq during 2014–2015. Arch Virol 161:1229–1237CrossRefPubMed
27.
go back to reference Seyfi Abad Shoupouri MR, Mayahi M, Charkhkar S et al (2002) Serotype identification of recent Iranian isolates of infectious bronchitis virus by the type specific multiplex RT-PCR. Arch Razi Inst 53:79–85 Seyfi Abad Shoupouri MR, Mayahi M, Charkhkar S et al (2002) Serotype identification of recent Iranian isolates of infectious bronchitis virus by the type specific multiplex RT-PCR. Arch Razi Inst 53:79–85
28.
go back to reference Selim K, Arafa AS, Hussein HA, El-Sanousi AA (2013) Molecular characterization of infectious bronchitis viruses isolated from broiler and layer chicken farms in Egypt during 2012. Int J Vet Sci Med 1:102–108CrossRef Selim K, Arafa AS, Hussein HA, El-Sanousi AA (2013) Molecular characterization of infectious bronchitis viruses isolated from broiler and layer chicken farms in Egypt during 2012. Int J Vet Sci Med 1:102–108CrossRef
29.
go back to reference Seyfi Abad Shapouri M, Mayahi M, Assasi K, Charkhkar S (2004) A survey of the prevalence of infectious bronchitis virus type 4/91 in Iran. Acta Vet Hung 52:163–166CrossRefPubMed Seyfi Abad Shapouri M, Mayahi M, Assasi K, Charkhkar S (2004) A survey of the prevalence of infectious bronchitis virus type 4/91 in Iran. Acta Vet Hung 52:163–166CrossRefPubMed
30.
go back to reference Sumi V, Singh SD, Dhama K, Gowthaman V, Barathidasan R, Sukumar K (2012) Isolation and molecular characterization of infectious bronchitis virus from recent outbreaks in broiler flocks reveals emergence of novel strain in India. Trop Anim Health Prod 44:1791–1795CrossRefPubMed Sumi V, Singh SD, Dhama K, Gowthaman V, Barathidasan R, Sukumar K (2012) Isolation and molecular characterization of infectious bronchitis virus from recent outbreaks in broiler flocks reveals emergence of novel strain in India. Trop Anim Health Prod 44:1791–1795CrossRefPubMed
31.
go back to reference Tan L, Liao Y, Fan J, Zhang Y, Mao X, Sun Y, Song C, Qiu X, Meng C, Ding C (2016) Prediction and identification of novel IBV S1 protein derived CTL epitopes in chicken. Vaccine 34:380–386CrossRefPubMed Tan L, Liao Y, Fan J, Zhang Y, Mao X, Sun Y, Song C, Qiu X, Meng C, Ding C (2016) Prediction and identification of novel IBV S1 protein derived CTL epitopes in chicken. Vaccine 34:380–386CrossRefPubMed
32.
go back to reference Vasfi-Marandi M, Bozorgmehrifard M (2001) Isolation and identification of infectious bronchitis viruses in chickens between 1997–2000 in Iran. J Fac Vet Med Univ Tehran 56:119–124 Vasfi-Marandi M, Bozorgmehrifard M (2001) Isolation and identification of infectious bronchitis viruses in chickens between 1997–2000 in Iran. J Fac Vet Med Univ Tehran 56:119–124
33.
go back to reference Worthington KJ, Currie R, Jones RC (2008) A reverse transcriptase-polymerase chain reaction survey of infectious bronchitis virus genotypes in Western Europe from 2002 to 2006. Avian Pathol 37:247–257CrossRefPubMed Worthington KJ, Currie R, Jones RC (2008) A reverse transcriptase-polymerase chain reaction survey of infectious bronchitis virus genotypes in Western Europe from 2002 to 2006. Avian Pathol 37:247–257CrossRefPubMed
Metadata
Title
Co-circulation of three clusters of 793/B-like avian infectious bronchitis virus genotypes in Iranian chicken flocks
Authors
Ali Yousefzadeh Kalokhoran
Arash Ghalyanchilangeroudi
Hossein Hosseini
Omid Madadgar
Vahid Karimi
Masoud Hashemzadeh
Parvaneh Hesari
Mohammad Taha Zabihi Petroudi
Hamideh Najafi
Publication date
01-10-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 10/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3473-3

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