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Published in: Archives of Virology 7/2017

01-07-2017 | Annotated Sequence Record

Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India

Authors: Aditya Kulshreshtha, Poonam Roshan, Dolly Sharma, Vipin Hallan

Published in: Archives of Virology | Issue 7/2017

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Abstract

Begomoviruses are whitefly-transmitted single-stranded DNA viruses that are responsible for considerable economic losses. A begomovirus, alphasatellite and betasatellite were characterized in a Mirabilis jalapa plant exhibiting severe leaf curling and mottling symptoms. The complete viral genome shared highest sequence identity of 87% with pedilanthus leaf curl virus (AM712436), reported from Pakistan. Additionally, the viral genome was 84% identical to that of chilli leaf curl India virus (KX951415) and 83% identical to that of tobacco curly shoot virus (GU1999584), which were previously reported to infect M. jalapa in India and China, respectively. Based on the ICTV criterion for begomovirus species demarcation (≥91% sequence identity for the complete genome), the virus represents a new species, for which we propose the name Mirabilis leaf curl virus. The alphasatellite and betasatellite sequences were similar to the corresponding sequences of ageratum yellow vein India alphasatellite (KU852743; 99% identity) and tomato leaf curl Patna betasatellite (HQ180394; 86% identity) sequences, respectively. This report describes a new begomovirus-satellite disease complex in M. jalapa.
Literature
1.
go back to reference Argüello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to Motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by a comparative approach. Arch Virol 146:1465–1485CrossRefPubMed Argüello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to Motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by a comparative approach. Arch Virol 146:1465–1485CrossRefPubMed
2.
go back to reference Augustine BB, Suvakanta Dash, Mangala Lahkar, Lihite RJ, Kumar PS, Sathish P (2013) Effect of Mirabilis jalapa Linn. flowers in experimentally induced arthritis and consecutive oxidative stress. Int J Pharm Pharm Sci 5:190–193 Augustine BB, Suvakanta Dash, Mangala Lahkar, Lihite RJ, Kumar PS, Sathish P (2013) Effect of Mirabilis jalapa Linn. flowers in experimentally induced arthritis and consecutive oxidative stress. Int J Pharm Pharm Sci 5:190–193
3.
go back to reference Briddon RW, Bull SE, Amin I, Idris AM, Mansoor S, Bedford ID, Dhawan P, Rishi N, Siwatch SS, Abdel-Salam AM, Brown JK, Zafar Y, Markham PG (2003) Diversity of DNA β, a satellite molecule associated with some monopartite begomoviruses. Virology 312:106–121CrossRefPubMed Briddon RW, Bull SE, Amin I, Idris AM, Mansoor S, Bedford ID, Dhawan P, Rishi N, Siwatch SS, Abdel-Salam AM, Brown JK, Zafar Y, Markham PG (2003) Diversity of DNA β, a satellite molecule associated with some monopartite begomoviruses. Virology 312:106–121CrossRefPubMed
4.
go back to reference Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abdel-Salam AM, Markham PG (2004) Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus–DNA β complexes. Virology 324:462–474CrossRefPubMed Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abdel-Salam AM, Markham PG (2004) Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus–DNA β complexes. Virology 324:462–474CrossRefPubMed
5.
go back to reference Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β. Mol Biotechnol 20:315–318CrossRefPubMed Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β. Mol Biotechnol 20:315–318CrossRefPubMed
6.
go back to reference Brown JK, Fauquet CM, Briddon RW, Zerbini M, Moriones E, Navas-Castillo J (2012) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Academic press, London Brown JK, Fauquet CM, Briddon RW, Zerbini M, Moriones E, Navas-Castillo J (2012) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Academic press, London
7.
go back to reference Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed
8.
go back to reference Castillo-Urquiza GP, Beserra JEA Jr, Bruckner FP, Lima AT, Varsani A, Alfenas-Zerbini P, Zerbini FM (2008) Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch Virol 153:1985–1989CrossRefPubMed Castillo-Urquiza GP, Beserra JEA Jr, Bruckner FP, Lima AT, Varsani A, Alfenas-Zerbini P, Zerbini FM (2008) Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch Virol 153:1985–1989CrossRefPubMed
9.
go back to reference Fontes EP, Eagle PA, Sipe PS, Luckow VA, Hanley-Bowdoin L (1994) Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J Biol Chem 269:8459–8465PubMed Fontes EP, Eagle PA, Sipe PS, Luckow VA, Hanley-Bowdoin L (1994) Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J Biol Chem 269:8459–8465PubMed
10.
go back to reference Hatlestad GJ, Elam L, Gonzalez A, Lloyd AM (2011) Mirabilis jalapa mottle virus: a new carlavirus infecting four o’clocks. Arch Virol 156:2109–2111CrossRefPubMed Hatlestad GJ, Elam L, Gonzalez A, Lloyd AM (2011) Mirabilis jalapa mottle virus: a new carlavirus infecting four o’clocks. Arch Virol 156:2109–2111CrossRefPubMed
11.
go back to reference Jaidi M, Kumar S, Raj SK (2017) First report of Chilli leaf curl India virus infecting Mirabilis jalapa in India. New Dis Rep 35:2CrossRef Jaidi M, Kumar S, Raj SK (2017) First report of Chilli leaf curl India virus infecting Mirabilis jalapa in India. New Dis Rep 35:2CrossRef
12.
go back to reference Lefeuvre P, Martin DP, Hoareau M, Naze F, Delatte H, Thierry M, Varsani A, Becker N, Reynaud B, Lett JM (2007) Begomovirus ‘melting pot’ in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J Gen Virol 88:3458–3468CrossRefPubMed Lefeuvre P, Martin DP, Hoareau M, Naze F, Delatte H, Thierry M, Varsani A, Becker N, Reynaud B, Lett JM (2007) Begomovirus ‘melting pot’ in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J Gen Virol 88:3458–3468CrossRefPubMed
13.
go back to reference Lima AT, Sobrinho RR, Gonzalez-Aguilera J, Rocha CS, Silva SJ, Xavier CA, Silva FN, Duffy S, Zerbini FM (2013) Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts. J Gen Virol 94:418–431CrossRefPubMed Lima AT, Sobrinho RR, Gonzalez-Aguilera J, Rocha CS, Silva SJ, Xavier CA, Silva FN, Duffy S, Zerbini FM (2013) Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts. J Gen Virol 94:418–431CrossRefPubMed
14.
go back to reference Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. doi:10.1093/ve/vev003 Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. doi:10.​1093/​ve/​vev003
15.
go back to reference Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277CrossRefPubMedPubMedCentral
16.
go back to reference Nath LR, Manjunath KP, Savadi RV, Akki KS (2010) Anti-inflammatory activity of Mirabilis jalapa Linn. leaves. J Basic Clin Pharm 1:93PubMedPubMedCentral Nath LR, Manjunath KP, Savadi RV, Akki KS (2010) Anti-inflammatory activity of Mirabilis jalapa Linn. leaves. J Basic Clin Pharm 1:93PubMedPubMedCentral
17.
go back to reference Noueiry AO, Lucas WJ, Gilbertson RL (1994) Two proteins of a plant DNA virus coordinate nuclear and plasmodesmal transport. Cell 76:925–932CrossRefPubMed Noueiry AO, Lucas WJ, Gilbertson RL (1994) Two proteins of a plant DNA virus coordinate nuclear and plasmodesmal transport. Cell 76:925–932CrossRefPubMed
18.
go back to reference Parrella G (2002) First report of Parietaria mottle virus in Mirabilis jalapa. Plant Pathol 51:401CrossRef Parrella G (2002) First report of Parietaria mottle virus in Mirabilis jalapa. Plant Pathol 51:401CrossRef
19.
go back to reference Rojas MR, Gilbertson RL, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef Rojas MR, Gilbertson RL, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef
20.
go back to reference Saeed M, Zafar Y, Randles JW, Rezaian MA (2007) A monopartite begomovirus-associated DNA β satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. J Gen Virol 88:2881–2889CrossRefPubMed Saeed M, Zafar Y, Randles JW, Rezaian MA (2007) A monopartite begomovirus-associated DNA β satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. J Gen Virol 88:2881–2889CrossRefPubMed
21.
go back to reference Saunders K, Norman A, Gucciardo S, Stanley J (2004) The DNA β satellite component associated with ageratum yellow vein disease encodes an essential pathogenicity protein (βC1). Virology 324:37–47CrossRefPubMed Saunders K, Norman A, Gucciardo S, Stanley J (2004) The DNA β satellite component associated with ageratum yellow vein disease encodes an essential pathogenicity protein (βC1). Virology 324:37–47CrossRefPubMed
22.
go back to reference Sharma P, Ikegami M, Kon T (2010) Identification of the virulence factors and suppressors of posttranscriptional gene silencing encoded by Ageratum yellow vein virus, a monopartite begomovirus. Virus Res 149:19–27CrossRefPubMed Sharma P, Ikegami M, Kon T (2010) Identification of the virulence factors and suppressors of posttranscriptional gene silencing encoded by Ageratum yellow vein virus, a monopartite begomovirus. Virus Res 149:19–27CrossRefPubMed
23.
go back to reference Tahir M, Haider MS, Iqbal J, Briddon RW (2009) Association of a distinct begomovirus and a betasatellite with leaf curl symptoms in Pedilanthus tithymaloides. J Phytopathol 157:188–193CrossRef Tahir M, Haider MS, Iqbal J, Briddon RW (2009) Association of a distinct begomovirus and a betasatellite with leaf curl symptoms in Pedilanthus tithymaloides. J Phytopathol 157:188–193CrossRef
24.
25.
go back to reference Wang JG, Peng JJ, Chen HR, Chen SY (2012) First report of Basella rugose mosaic virus infecting four o’clock (Mirabilis jalapa) in China. Plant Dis 96:294CrossRef Wang JG, Peng JJ, Chen HR, Chen SY (2012) First report of Basella rugose mosaic virus infecting four o’clock (Mirabilis jalapa) in China. Plant Dis 96:294CrossRef
26.
go back to reference Wyatt SD, Brown JK (1996) Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef Wyatt SD, Brown JK (1996) Detection of subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef
27.
go back to reference Xiong Y, Qing L, Ren F, Li F, Sun XC (2010) First report of Tobacco curly shoot virus on Mirabilis jalapa Linn in China. J Plant Pathol 92:546 Xiong Y, Qing L, Ren F, Li F, Sun XC (2010) First report of Tobacco curly shoot virus on Mirabilis jalapa Linn in China. J Plant Pathol 92:546
28.
go back to reference Zachariah SM, Aleykutty NA, Viswanad V, Jacob S, Prabhakar V (2011) In-vitro antioxidant potential of methanolic extracts of Mirabilis jalapa Linn. Free Radic Antioxid 1:82–86CrossRef Zachariah SM, Aleykutty NA, Viswanad V, Jacob S, Prabhakar V (2011) In-vitro antioxidant potential of methanolic extracts of Mirabilis jalapa Linn. Free Radic Antioxid 1:82–86CrossRef
29.
go back to reference Zerbini FM, Briddon RW, Idris A, Martin DP, Moriones E, Navas-Castillo J, Rivera-Bustamante R, Roumagnac P, Varsani A, ICTV Report Consortium (2017) ICTV virus taxonomy profiles: geminiviridae. J Gen Virol 98:131–133CrossRefPubMed Zerbini FM, Briddon RW, Idris A, Martin DP, Moriones E, Navas-Castillo J, Rivera-Bustamante R, Roumagnac P, Varsani A, ICTV Report Consortium (2017) ICTV virus taxonomy profiles: geminiviridae. J Gen Virol 98:131–133CrossRefPubMed
30.
Metadata
Title
Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India
Authors
Aditya Kulshreshtha
Poonam Roshan
Dolly Sharma
Vipin Hallan
Publication date
01-07-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 7/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3330-4

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