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Published in: Archives of Virology 7/2017

01-07-2017 | Annotated Sequence Record

Complete genome sequence of a novel avastrovirus in goose

Authors: Yuxuan Zhang, Fumin Wang, Ning Liu, Lin Yang, Dabing Zhang

Published in: Archives of Virology | Issue 7/2017

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Abstract

We report the complete genome sequence of a new avastrovirus of goose-origin (FLX). The 7299-nt-long genome consisted of three overlapping open reading frames (ORFs) that were in different reading frames. Pairwise comparisons showed that the FLX genome was 59% identical to its closest relatives and that the levels of amino acid identity shared by FLX with other astroviruses did not exceed 54% in ORF1a, 66% in ORF1b, and 50% in ORF2, respectively. Phylogenetic analysis based on the amino acid sequence of the full-length ORF2 demonstrated that FLX was highly divergent from all other avastroviruses. At the amino acid level the complete capsid region of FLX shared genetic distances of 0.574–0.719 with three official avastrovirus species, suggesting that it can be classified as a member of a novel species in the genus Avastrovirus.
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Literature
2.
go back to reference Chu DK, Leung CY, Perera HK, Ng EM, Gilbert M, Joyner PH, Grioni A, Ades G, Guan Y, Peiris JS, Poon LL (2012) A novel group of avian astroviruses in wild aquatic birds. J Virol 86:13772–13778CrossRefPubMedPubMedCentral Chu DK, Leung CY, Perera HK, Ng EM, Gilbert M, Joyner PH, Grioni A, Ades G, Guan Y, Peiris JS, Poon LL (2012) A novel group of avian astroviruses in wild aquatic birds. J Virol 86:13772–13778CrossRefPubMedPubMedCentral
3.
go back to reference Fu Y, Pan M, Wang X, Xu Y, Xie X, Knowles NJ, Yang H, Zhang D (2009) Complete sequence of a duck astrovirus associated with fatal hepatitis in ducklings. J Gen Virol 90:1104–1108CrossRefPubMed Fu Y, Pan M, Wang X, Xu Y, Xie X, Knowles NJ, Yang H, Zhang D (2009) Complete sequence of a duck astrovirus associated with fatal hepatitis in ducklings. J Gen Virol 90:1104–1108CrossRefPubMed
5.
go back to reference Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A (2000) Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. J Virol 74:8487–8493CrossRefPubMedPubMedCentral Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A (2000) Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. J Virol 74:8487–8493CrossRefPubMedPubMedCentral
6.
go back to reference Jiang B, Monroe SS, Koonin EV, Stine SE, Glass RI (1993) RNA sequence of astrovirus: distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proc Natl Acad Sci USA 90:10539–10543CrossRefPubMedPubMedCentral Jiang B, Monroe SS, Koonin EV, Stine SE, Glass RI (1993) RNA sequence of astrovirus: distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proc Natl Acad Sci USA 90:10539–10543CrossRefPubMedPubMedCentral
7.
go back to reference Jonassen CM, Jonassen TØ, Grinde B (1998) A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J Gen Virol 79:715–718CrossRefPubMed Jonassen CM, Jonassen TØ, Grinde B (1998) A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J Gen Virol 79:715–718CrossRefPubMed
8.
go back to reference Jonassen CM, Jonassen TØ, Sveen TM, Grinde B (2003) Complete genomic sequences of astroviruses from sheep and turkey: comparison with related viruses. Virus Res 91:195–201CrossRefPubMed Jonassen CM, Jonassen TØ, Sveen TM, Grinde B (2003) Complete genomic sequences of astroviruses from sheep and turkey: comparison with related viruses. Virus Res 91:195–201CrossRefPubMed
9.
go back to reference Kang KI, Icard AH, Linnemann E, Sellers HS, Mundt E (2012) Determination of the full length sequence of a chicken astrovirus suggests a different replication mechanism. Virus Genes 44:45–50CrossRefPubMed Kang KI, Icard AH, Linnemann E, Sellers HS, Mundt E (2012) Determination of the full length sequence of a chicken astrovirus suggests a different replication mechanism. Virus Genes 44:45–50CrossRefPubMed
11.
go back to reference Lewis TL, Greenberg HB, Herrmann JE, Smith LS, Matsui SM (1994) Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. J Virol 68:77–83PubMedPubMedCentral Lewis TL, Greenberg HB, Herrmann JE, Smith LS, Matsui SM (1994) Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. J Virol 68:77–83PubMedPubMedCentral
12.
go back to reference Liu N, Wang F, Shi J, Zheng L, Wang X, Zhang D (2014) Molecular characterization of a duck hepatitis virus 3-like astrovirus. Vet Microbiol 170:39–47CrossRefPubMed Liu N, Wang F, Shi J, Zheng L, Wang X, Zhang D (2014) Molecular characterization of a duck hepatitis virus 3-like astrovirus. Vet Microbiol 170:39–47CrossRefPubMed
13.
go back to reference Liu N, Wang F, Zhang D (2014) Complete sequence of a novel duck astrovirus. Arch Virol 159:2823–2827CrossRefPubMed Liu N, Wang F, Zhang D (2014) Complete sequence of a novel duck astrovirus. Arch Virol 159:2823–2827CrossRefPubMed
14.
go back to reference Liao Q, Liu N, Wang X, Wang F, Zhang D (2015) Genetic characterization of a novel astrovirus in Pekin ducks. Infect Genet Evol 32:60–67CrossRefPubMed Liao Q, Liu N, Wang X, Wang F, Zhang D (2015) Genetic characterization of a novel astrovirus in Pekin ducks. Infect Genet Evol 32:60–67CrossRefPubMed
18.
go back to reference Sajewicz-Krukowska J, Domanska-Blicharz K (2016) Nearly full-length genome sequence of a novel astrovirus isolated from chickens with ‘white chicks’ condition. Arch Virol 161:2581–2587CrossRefPubMedPubMedCentral Sajewicz-Krukowska J, Domanska-Blicharz K (2016) Nearly full-length genome sequence of a novel astrovirus isolated from chickens with ‘white chicks’ condition. Arch Virol 161:2581–2587CrossRefPubMedPubMedCentral
19.
go back to reference Smyth VJ, Todd D, Trudgett J, Lee A, Welsh MD (2012) Capsid protein sequence diversity of chicken astrovirus. Avian Pathol 41:151–159CrossRefPubMed Smyth VJ, Todd D, Trudgett J, Lee A, Welsh MD (2012) Capsid protein sequence diversity of chicken astrovirus. Avian Pathol 41:151–159CrossRefPubMed
20.
21.
go back to reference Todd D, Smyth VJ, Ball NW, Donnelly BM, Wylie M, Knowles NJ, Adair BM (2009) Identification of chicken enterovirus-like viruses, duck hepatitis virus type 2 and duck hepatitis virus type 3 as astroviruses. Avian Pathol 38:21–30CrossRefPubMed Todd D, Smyth VJ, Ball NW, Donnelly BM, Wylie M, Knowles NJ, Adair BM (2009) Identification of chicken enterovirus-like viruses, duck hepatitis virus type 2 and duck hepatitis virus type 3 as astroviruses. Avian Pathol 38:21–30CrossRefPubMed
Metadata
Title
Complete genome sequence of a novel avastrovirus in goose
Authors
Yuxuan Zhang
Fumin Wang
Ning Liu
Lin Yang
Dabing Zhang
Publication date
01-07-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 7/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3297-1

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