Skip to main content
Top
Published in: Archives of Virology 3/2016

01-03-2016 | Brief Report

Molecular characterization of a new tobacco rattle virus (TRV) RNA2 and identification of different TRV RNA1/RNA2 pairings in various potato-growing areas in Germany

Authors: R. Koenig, I. Hilbrich, K. Lindner

Published in: Archives of Virology | Issue 3/2016

Login to get access

Abstract

The almost complete nucleotide sequences lacking only the short primer-derived 5’ and 3’ ends were determined for two closely related isolates of a new tobacco rattle virus (TRV) RNA2, i.e., ByKT (Bav)-2 and ByKT (LS)-2. These isolates originated from corky-ringspot-affected potato-growing areas in southern Germany (Bavaria) and northern central Germany (Lower Saxony), respectively, where they were associated with distinct supporting TRV RNA1s. In potatoes in other parts of Germany, TRV RNA2s closely related to TRV TpO1 RNA2 were identified. They, too, were associated with distinct TRV RNA1s in different parts of the country.
Literature
1.
go back to reference Heinze C, van Bargen S, Sadowska-Rybac M, Willingmann P, Adam G (2000) Sequences of tobacco rattle viruses (TRV) from potato. J Phytopathol 148:547–554CrossRef Heinze C, van Bargen S, Sadowska-Rybac M, Willingmann P, Adam G (2000) Sequences of tobacco rattle viruses (TRV) from potato. J Phytopathol 148:547–554CrossRef
2.
go back to reference Koenig R, Bergstrom GC, Gray SM, Loss S (2002) A New York isolate of Soil-borne wheat mosaic virus differs considerably from the Nebraska type strain in the nucleotide sequences of various coding regions but not in the deduced amino acid sequences. Arch Virol 147:617–625CrossRefPubMed Koenig R, Bergstrom GC, Gray SM, Loss S (2002) A New York isolate of Soil-borne wheat mosaic virus differs considerably from the Nebraska type strain in the nucleotide sequences of various coding regions but not in the deduced amino acid sequences. Arch Virol 147:617–625CrossRefPubMed
3.
go back to reference Koenig R, Lesemann DE, Pfeilstetter E, Winter S, Pleij CWA (2011) Deletions and recombinations with the RNA1 3′ ends of different tobraviruses have created a multitude of tobacco rattle virus TCM-related RNA2 species in Alstroemeria and tulip. J Gen Virol 92:988–996CrossRefPubMed Koenig R, Lesemann DE, Pfeilstetter E, Winter S, Pleij CWA (2011) Deletions and recombinations with the RNA1 3′ ends of different tobraviruses have created a multitude of tobacco rattle virus TCM-related RNA2 species in Alstroemeria and tulip. J Gen Virol 92:988–996CrossRefPubMed
4.
go back to reference Koenig R, Lesemann DE, Pleij CWA (2012) Tobacco rattle virus genome alterations in the Hosta hybrid ‘Green Fountain’ and other plants: reassortments, recombinations and deletions. Arch Virol 157:2005–2008CrossRefPubMed Koenig R, Lesemann DE, Pleij CWA (2012) Tobacco rattle virus genome alterations in the Hosta hybrid ‘Green Fountain’ and other plants: reassortments, recombinations and deletions. Arch Virol 157:2005–2008CrossRefPubMed
5.
go back to reference Koenig R, Hilbrich I, Lindner K (2015) Complete nucleotide sequences of two closely related tobacco rattle virus RNA2s for which previously possibly only deletion/recombination mutants had been described. Virus Res 203:20–23CrossRefPubMed Koenig R, Hilbrich I, Lindner K (2015) Complete nucleotide sequences of two closely related tobacco rattle virus RNA2s for which previously possibly only deletion/recombination mutants had been described. Virus Res 203:20–23CrossRefPubMed
6.
go back to reference Körbelin J, Willingmann P, Adam G, Heinze C (2011) The complete sequence of tobacco mosaic virus isolate Ohio V reveals a high accumulation of silent mutations in all open reading frames. Arch Virol 157:387–389CrossRefPubMed Körbelin J, Willingmann P, Adam G, Heinze C (2011) The complete sequence of tobacco mosaic virus isolate Ohio V reveals a high accumulation of silent mutations in all open reading frames. Arch Virol 157:387–389CrossRefPubMed
7.
go back to reference MacFarlane SA, Wallis CV, Brown DJF (1996) Multiple virus genes involved in the nematode transmission of pea early browning virus. Virology 219:417–422CrossRefPubMed MacFarlane SA, Wallis CV, Brown DJF (1996) Multiple virus genes involved in the nematode transmission of pea early browning virus. Virology 219:417–422CrossRefPubMed
8.
go back to reference MacFarlane SA, Vassilakos N, Brown DJF (1999) Similarities in the genome organization of tobacco rattle virus and pea early-browning virus isolates that are transmitted by the same vector nematode. J Gen Virol 80:273–276CrossRefPubMed MacFarlane SA, Vassilakos N, Brown DJF (1999) Similarities in the genome organization of tobacco rattle virus and pea early-browning virus isolates that are transmitted by the same vector nematode. J Gen Virol 80:273–276CrossRefPubMed
10.
go back to reference Robinson DJ (2004) Identification and nucleotide sequence of a tobacco rattle virus RNA1 variant that causes spraing disease in Potato cv. Bintje. J Phytopathol 152:286–290CrossRef Robinson DJ (2004) Identification and nucleotide sequence of a tobacco rattle virus RNA1 variant that causes spraing disease in Potato cv. Bintje. J Phytopathol 152:286–290CrossRef
11.
12.
go back to reference Visser PB, Bol JF (1999) Nonstructural proteins of Tobacco rattle virus which have a role in nematode-transmission: expression pattern and interaction with viral coat protein. J Gen Virol 80:3273–3280CrossRefPubMed Visser PB, Bol JF (1999) Nonstructural proteins of Tobacco rattle virus which have a role in nematode-transmission: expression pattern and interaction with viral coat protein. J Gen Virol 80:3273–3280CrossRefPubMed
13.
go back to reference Yin Z, Pawełkowicz M, Michalak K, Chrzanowska M, Zimnoch-Guzowska E (2014) The genomic RNA1 and RNA2 sequences of the tobacco rattle virus isolates found in Polish potato fields. Virus Res 185:110–113CrossRefPubMed Yin Z, Pawełkowicz M, Michalak K, Chrzanowska M, Zimnoch-Guzowska E (2014) The genomic RNA1 and RNA2 sequences of the tobacco rattle virus isolates found in Polish potato fields. Virus Res 185:110–113CrossRefPubMed
Metadata
Title
Molecular characterization of a new tobacco rattle virus (TRV) RNA2 and identification of different TRV RNA1/RNA2 pairings in various potato-growing areas in Germany
Authors
R. Koenig
I. Hilbrich
K. Lindner
Publication date
01-03-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2697-3

Other articles of this Issue 3/2016

Archives of Virology 3/2016 Go to the issue
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.