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Published in: Archives of Virology 3/2016

01-03-2016 | Annotated Sequence Record

Novel begomoviruses recovered from Pavonia sp. in Brazil

Authors: Vitor Batista Pinto, João Paulo Silva, Elvira Fiallo-Olivé, Jésus Navas-Castillo, Francisco Murilo Zerbini

Published in: Archives of Virology | Issue 3/2016

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Abstract

Begomoviruses are whitefly-transmitted, single-stranded DNA viruses that cause serious infections in crop plants and are often also associated with non-cultivated plants. Here, we report the detection of two new begomoviruses in Pavonia sp. (Malvaceae). Sequence comparisons and phylogenetic analysis showed that these novel viruses are related to New World begomoviruses. The nucleotide sequences of the DNA-A of both viruses had the highest similarity to abutilon mosaic Bolivia virus (AbMBoV). Based on symptoms observed in the field and considering the host, we propose the names pavonia mosaic virus (PavMV) and pavonia yellow mosaic virus (PavYMV) for these two new begomoviruses.
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Literature
1.
go back to reference Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JC, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JC, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed
2.
go back to reference Jones DR (2003) Plant viruses transmitted by whiteflies. Eur J Plant Pathol 109:195–219CrossRef Jones DR (2003) Plant viruses transmitted by whiteflies. Eur J Plant Pathol 109:195–219CrossRef
3.
go back to reference Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopath 49:219–248CrossRef Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopath 49:219–248CrossRef
4.
go back to reference Marquez-Martin B, Aragon-Caballero L, Fiallo-Olive E, Navas-Castillo J, Moriones E (2011) Tomato leaf deformation virus, a novel begomovirus associated with a severe disease of tomato in Peru. Eur J Plant Pathol 129:1–7CrossRef Marquez-Martin B, Aragon-Caballero L, Fiallo-Olive E, Navas-Castillo J, Moriones E (2011) Tomato leaf deformation virus, a novel begomovirus associated with a severe disease of tomato in Peru. Eur J Plant Pathol 129:1–7CrossRef
5.
go back to reference Melgarejo TA, Kon T, Rojas MR, Paz-Carrasco L, Zerbini FM, Gilbertson RL (2013) Characterization of a new world monopartite begomovirus causing leaf curl disease of tomato in Ecuador and Peru reveals a new direction in geminivirus evolution. J Virol 87:5397–5413PubMedCentralCrossRefPubMed Melgarejo TA, Kon T, Rojas MR, Paz-Carrasco L, Zerbini FM, Gilbertson RL (2013) Characterization of a new world monopartite begomovirus causing leaf curl disease of tomato in Ecuador and Peru reveals a new direction in geminivirus evolution. J Virol 87:5397–5413PubMedCentralCrossRefPubMed
6.
go back to reference Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394CrossRefPubMed Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394CrossRefPubMed
7.
go back to reference Brustolini OJ, Machado JP, Condori-Apfata JA, Coco D, Deguchi M, Loriato VA, Pereira WA, Alfenas-Zerbini P, Zerbini FM, Inoue-Nagata AK, Santos AA, Chory J, Silva FF, Fontes EP (2015) Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. Plant Biotechnol J. doi:10.1111/pbi.12349 PubMed Brustolini OJ, Machado JP, Condori-Apfata JA, Coco D, Deguchi M, Loriato VA, Pereira WA, Alfenas-Zerbini P, Zerbini FM, Inoue-Nagata AK, Santos AA, Chory J, Silva FF, Fontes EP (2015) Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. Plant Biotechnol J. doi:10.​1111/​pbi.​12349 PubMed
8.
go back to reference Costa AS (1955) Studies on Abutilon mosaic in Brazil. J Phytopathol 24:97–112 Costa AS (1955) Studies on Abutilon mosaic in Brazil. J Phytopathol 24:97–112
9.
go back to reference Frischmuth T, Engel M, Lauster S, Jeske H (1997) Nucleotide sequence evidence for the occurrence of three distinct whitefly-transmitted, Sida-infecting bipartite geminiviruses in Central America. J Gen Virol 78:2675–2682CrossRefPubMed Frischmuth T, Engel M, Lauster S, Jeske H (1997) Nucleotide sequence evidence for the occurrence of three distinct whitefly-transmitted, Sida-infecting bipartite geminiviruses in Central America. J Gen Virol 78:2675–2682CrossRefPubMed
10.
go back to reference Hofer P, Engel M, Jeske H, Frischmuth T (1997) Nucleotide sequence of a new bipartite geminivirus isolated from the common weed Sida rhombifolia in Costa Rica. Virology 78:1785–1790 Hofer P, Engel M, Jeske H, Frischmuth T (1997) Nucleotide sequence of a new bipartite geminivirus isolated from the common weed Sida rhombifolia in Costa Rica. Virology 78:1785–1790
11.
go back to reference Roye ME, McLaughlin WA, Nakhla MK, Maxwell DP (1997) Genetic diversity among geminiviruses associated with the weed species Sida spp., Macroptilium lathyroides, and Wissadula amplissima from Jamaica. Plant Dis 81:1251–1258CrossRef Roye ME, McLaughlin WA, Nakhla MK, Maxwell DP (1997) Genetic diversity among geminiviruses associated with the weed species Sida spp., Macroptilium lathyroides, and Wissadula amplissima from Jamaica. Plant Dis 81:1251–1258CrossRef
12.
go back to reference Echemendía AL, Ramos PL, Díaz L, Peral R, Fuentes A, Pujol M, González G (2004) First report of Sida golden yellow vein virus infecting Sida species in Cuba. Plant Pathol 53:234CrossRef Echemendía AL, Ramos PL, Díaz L, Peral R, Fuentes A, Pujol M, González G (2004) First report of Sida golden yellow vein virus infecting Sida species in Cuba. Plant Pathol 53:234CrossRef
13.
go back to reference Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149:829–841CrossRefPubMed Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149:829–841CrossRefPubMed
14.
go back to reference Fiallo-Olivé E, Martinez-Zubiaur Y, Moriones E, Navas-Castillo J (2010) Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Arch Virol 155:1535–1537CrossRefPubMed Fiallo-Olivé E, Martinez-Zubiaur Y, Moriones E, Navas-Castillo J (2010) Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Arch Virol 155:1535–1537CrossRefPubMed
15.
go back to reference Fiallo-Olive E, Navas-Castillo J, Moriones E, Martinez-Zubiaur Y (2012) Begomoviruses infecting weeds in Cuba: Increased host range and a novel virus infecting Sida rhombifolia. Arch Virol 157:141–146CrossRefPubMed Fiallo-Olive E, Navas-Castillo J, Moriones E, Martinez-Zubiaur Y (2012) Begomoviruses infecting weeds in Cuba: Increased host range and a novel virus infecting Sida rhombifolia. Arch Virol 157:141–146CrossRefPubMed
16.
go back to reference Tavares SS, Ramos-Sobrinho R, Gonzalez-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Dan 30:305–315CrossRef Tavares SS, Ramos-Sobrinho R, Gonzalez-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Dan 30:305–315CrossRef
17.
go back to reference Fryxell PA (1999) Pavonia Cavanilles (Malvaceae). Flora Neotropica Monograph 76 Fryxell PA (1999) Pavonia Cavanilles (Malvaceae). Flora Neotropica Monograph 76
18.
go back to reference Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull 19:11–15 Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull 19:11–15
19.
go back to reference Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J Virol Methods 116:209–211CrossRefPubMed Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J Virol Methods 116:209–211CrossRefPubMed
20.
go back to reference Muhire BM, Varsani A, Martin DP (2014) SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277PubMedCentralCrossRefPubMed Muhire BM, Varsani A, Martin DP (2014) SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277PubMedCentralCrossRefPubMed
21.
22.
go back to reference Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574CrossRefPubMed Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574CrossRefPubMed
23.
go back to reference Nylander JAA (2004) MrModeltest v2. Program distributed by the author Evolutionary Biology Centre, Uppsala University Nylander JAA (2004) MrModeltest v2. Program distributed by the author Evolutionary Biology Centre, Uppsala University
24.
go back to reference Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef
25.
go back to reference Orlando A, Silberschmidt K (1946) Studies on the natural dissemination of the virus of “infectious chlorosis” of the Malvaceae and its relation with the insect vector Bemisia tabaci Genn. Arq Inst Biol 17:1–36 Orlando A, Silberschmidt K (1946) Studies on the natural dissemination of the virus of “infectious chlorosis” of the Malvaceae and its relation with the insect vector Bemisia tabaci Genn. Arq Inst Biol 17:1–36
26.
go back to reference Castillo-Urquiza GP, Beserra JEA Jr, Bruckner FP, Lima ATM, Varsani A, Alfenas-Zerbini P, Zerbini FM (2008) Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch Virol 153:1985–1989CrossRefPubMed Castillo-Urquiza GP, Beserra JEA Jr, Bruckner FP, Lima ATM, Varsani A, Alfenas-Zerbini P, Zerbini FM (2008) Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch Virol 153:1985–1989CrossRefPubMed
27.
go back to reference Wyant PS, Gotthardt D, Schafer B, Krenz B, Jeske H (2011) The genomes of four novel begomoviruses and a new Sida micrantha mosaic virus strain from Bolivian weeds. Arch Virol 156:347–352CrossRefPubMed Wyant PS, Gotthardt D, Schafer B, Krenz B, Jeske H (2011) The genomes of four novel begomoviruses and a new Sida micrantha mosaic virus strain from Bolivian weeds. Arch Virol 156:347–352CrossRefPubMed
28.
go back to reference Kon T, Rojas MR, Abdourhamane IK, Gilbertson RL (2009) Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa. J Gen Virol 90:1001–1013CrossRefPubMed Kon T, Rojas MR, Abdourhamane IK, Gilbertson RL (2009) Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa. J Gen Virol 90:1001–1013CrossRefPubMed
29.
go back to reference Sattar MN, Kvarnheden A, Saeed M, Briddon RW (2013) Cotton leaf curl disease—an emerging threat to cotton production worldwide. J Gen Virol 94:695–710CrossRefPubMed Sattar MN, Kvarnheden A, Saeed M, Briddon RW (2013) Cotton leaf curl disease—an emerging threat to cotton production worldwide. J Gen Virol 94:695–710CrossRefPubMed
Metadata
Title
Novel begomoviruses recovered from Pavonia sp. in Brazil
Authors
Vitor Batista Pinto
João Paulo Silva
Elvira Fiallo-Olivé
Jésus Navas-Castillo
Francisco Murilo Zerbini
Publication date
01-03-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2708-4

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