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Archives of Virology
Published in: Archives of Virology 8/2013

01-08-2013 | Original Article

Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea

Authors: Yu Na Lee, Changhee Lee

Published in: Archives of Virology | Issue 8/2013

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Abstract

A novel cytopathogenic paramyxovirus was isolated from a lung sample from a piglet, using continuous porcine alveolar macrophage cells. Morphologic and genetic studies indicated that this porcine virus (pPIV5) belongs to the species Parainfluenza 5 in the family Paramyxoviridae. We attempted to determine the complete nucleotide sequence of the first Korean pPIV5 isolate, designated KNU-11. The full-length genome of KNU-11 was found to be 15,246 nucleotides in length and consist of seven nonoverlapping genes (3′-N-V/P-M-F-SH-HN-L-5′) predicted to encode eight proteins. The overall degree of nucleotide sequence identity was 98.7 % between KNU-11 and PIV5 (formerly simian virus 5, SV5), a prototype paramyxovirus, and the putative proteins had 74.4 to 99.2 % amino acid identity to those of PIV5. Phylogenetic analysis further demonstrated that the novel pPIV5 isolate is a member of the genus Rubulavirus of the subfamily Paramyxovirinae. The present study describes the identification and genomic characterization of a pPIV5 isolate in South Korea.
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Metadata
Title
Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea
Authors
Yu Na Lee
Changhee Lee
Publication date
01-08-2013
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1770-z

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