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Archives of Virology
Published in: Archives of Virology 11/2013

01-11-2013 | Brief Report

Molecular characterization of a porcine kobuvirus variant strain in China

Authors: Da Shi, Sha Zhang, Jianfei Chen, Hongyan Shi, Xin Zhang, Li Feng

Published in: Archives of Virology | Issue 11/2013

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Abstract

In this study, we report the complete nucleotide sequence of porcine kobuvirus CH/HZ/2011 (CH/HZ) isolated from infected piglets in China. Dendrograms indicated that CH/HZ is closely related to other porcine kobuviruses. The complete genome sequence of CH/HZ has an adenine insertion at position 124, an 18-nt deletion in the 5′UTR, and a 90-nt deletion in the 2B coding region. A neighbor-joining tree based on the VP1 gene indicated that 31 porcine kobuvirus strains are divided into four clusters (Thai-Japanese group, Hungarian group, Chinese group I and Chinese group II). The strain CH/HZ was included in Chinese group II.
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Metadata
Title
Molecular characterization of a porcine kobuvirus variant strain in China
Authors
Da Shi
Sha Zhang
Jianfei Chen
Hongyan Shi
Xin Zhang
Li Feng
Publication date
01-11-2013
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 11/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1736-1

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