Skip to main content
Top
Published in: Archives of Virology 11/2010

01-11-2010 | Brief Report

Association of an atypical alphasatellite with a bipartite New World begomovirus

Authors: G. Romay, D. Chirinos, F. Geraud-Pouey, C. Desbiez

Published in: Archives of Virology | Issue 11/2010

Login to get access

Abstract

The complete sequence of a watermelon-infecting Venezuelan begomovirus was obtained; it corresponds to that of the partially characterized melon chlorotic mosaic virus (MeCMV). MeCMV is a typical bipartite New World begomovirus. A putative alphasatellite, MeCMVa1, was found associated with MeCMV. This is the first satellite detected in the New World, and the first natural association of an alphasatellite with a bipartite begomovirus. The sequence of MeCMVa1 diverged highly from those of other alphasatellites, except for two atypical ones, which, like MeCMVa1, had a putative ORF2 embedded in the Rep-encoding ORF1. These findings raise new questions about the origin and evolution of subviral agents associated with begomoviruses.
Literature
1.
go back to reference Beetham PR, Hafner GJ, Harding RM, Dale JL (1997) Two mRNAs are transcribed from banana bunchy top virus DNA-1. J Gen Virol 78:229–236PubMed Beetham PR, Hafner GJ, Harding RM, Dale JL (1997) Two mRNAs are transcribed from banana bunchy top virus DNA-1. J Gen Virol 78:229–236PubMed
2.
go back to reference Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA beta. Mol Biotechnol 20:315–318CrossRefPubMed Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA beta. Mol Biotechnol 20:315–318CrossRefPubMed
3.
go back to reference Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abdel-Salam AM, Markham PG (2004) Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus—DNA beta complexes. Virology 324:462–474CrossRefPubMed Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abdel-Salam AM, Markham PG (2004) Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus—DNA beta complexes. Virology 324:462–474CrossRefPubMed
4.
go back to reference Briddon RW, Stanley J (2006) Subviral agents associated with plant single-stranded DNA viruses. Virology 344:198–210CrossRefPubMed Briddon RW, Stanley J (2006) Subviral agents associated with plant single-stranded DNA viruses. Virology 344:198–210CrossRefPubMed
5.
go back to reference Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM (2010) Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol Biol 10:97CrossRefPubMed Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM (2010) Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol Biol 10:97CrossRefPubMed
6.
go back to reference Cheung AK (2004) Identification of an octanucleotide motif sequence essential for viral protein, DNA, and progeny virus biosynthesis at the origin of DNA replication of porcine circovirus type 2. Virology 324:28–36CrossRefPubMed Cheung AK (2004) Identification of an octanucleotide motif sequence essential for viral protein, DNA, and progeny virus biosynthesis at the origin of DNA replication of porcine circovirus type 2. Virology 324:28–36CrossRefPubMed
7.
go back to reference Cheung AK (2007) A stem–loop structure, sequence non-specific, at the origin of DNA replication of porcine circovirus is essential for termination but not for initiation of rolling-circle DNA replication. Virology 363:229–235CrossRefPubMed Cheung AK (2007) A stem–loop structure, sequence non-specific, at the origin of DNA replication of porcine circovirus is essential for termination but not for initiation of rolling-circle DNA replication. Virology 363:229–235CrossRefPubMed
8.
go back to reference Cui X, Li G, Wang D, Hu D, Zhou X (2005) A begomovirus DNAβ-encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. J Virol 79:10764–10775CrossRefPubMed Cui X, Li G, Wang D, Hu D, Zhou X (2005) A begomovirus DNAβ-encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. J Virol 79:10764–10775CrossRefPubMed
9.
go back to reference Dry IB, Krake LR, Rigden JE, Rezaian MA (1997) A novel subviral agent associated with a geminivirus: The first report of a DNA satellite. Proc Nat Acad Sci USA 94:7088–7093CrossRefPubMed Dry IB, Krake LR, Rigden JE, Rezaian MA (1997) A novel subviral agent associated with a geminivirus: The first report of a DNA satellite. Proc Nat Acad Sci USA 94:7088–7093CrossRefPubMed
10.
go back to reference Erdmann JB, Shepherd DN, Martin DP, Varsani A, Rybicki EP, Jeske H (2010) Replicative intermediates of maize streak virus found during leaf development. J Gen Virol 91:1077–1081CrossRefPubMed Erdmann JB, Shepherd DN, Martin DP, Varsani A, Rybicki EP, Jeske H (2010) Replicative intermediates of maize streak virus found during leaf development. J Gen Virol 91:1077–1081CrossRefPubMed
11.
go back to reference Fauquet C, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821CrossRefPubMed Fauquet C, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821CrossRefPubMed
12.
go back to reference Fauquet CM, Stanley J (2003) Geminivirus classification and nomenclature: progress and problems. Ann Appl Biol 142:165–189CrossRef Fauquet CM, Stanley J (2003) Geminivirus classification and nomenclature: progress and problems. Ann Appl Biol 142:165–189CrossRef
13.
go back to reference Gibbs MJ, Weiller GF (1999) Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc Nat Acad Sci USA 96:8022–8027CrossRefPubMed Gibbs MJ, Weiller GF (1999) Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc Nat Acad Sci USA 96:8022–8027CrossRefPubMed
14.
go back to reference Gilbertson RL, Rojas MR, Russell DR, Maxwell DP (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. J Gen Virol 72:2843–2848CrossRefPubMed Gilbertson RL, Rojas MR, Russell DR, Maxwell DP (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. J Gen Virol 72:2843–2848CrossRefPubMed
15.
go back to reference Gronenborn B (2004) Nanoviruses: genome organisation and protein function. Vet Microbiol 98:103–109CrossRefPubMed Gronenborn B (2004) Nanoviruses: genome organisation and protein function. Vet Microbiol 98:103–109CrossRefPubMed
16.
go back to reference Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2006) Corchorus yellow vein virus, a New World geminivirus from the Old World. J Gen Virol 87:997–1003CrossRefPubMed Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2006) Corchorus yellow vein virus, a New World geminivirus from the Old World. J Gen Virol 87:997–1003CrossRefPubMed
17.
go back to reference Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2008) Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. J Gen Virol 89:312–326CrossRefPubMed Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2008) Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. J Gen Virol 89:312–326CrossRefPubMed
18.
go back to reference Hafner GJ, Stafford MR, Wolter LC, Harding RM, Dale JL (1997) Nicking and joining activity of banana bunchy top virus replication protein in vitro. J Gen Virol 78:1795–1799PubMed Hafner GJ, Stafford MR, Wolter LC, Harding RM, Dale JL (1997) Nicking and joining activity of banana bunchy top virus replication protein in vitro. J Gen Virol 78:1795–1799PubMed
19.
go back to reference Harding RM, Burns TM, Hafner GJ, Dietzgen RG, Dale JL (1993) Nucleotide sequence of one component of the banana bunchy top virus genome contains a putative replicase gene. J Gen Virol 74:323–328CrossRefPubMed Harding RM, Burns TM, Hafner GJ, Dietzgen RG, Dale JL (1993) Nucleotide sequence of one component of the banana bunchy top virus genome contains a putative replicase gene. J Gen Virol 74:323–328CrossRefPubMed
20.
go back to reference Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage Phi29 DNA polymerase. J Virol Methods 116:209–211CrossRefPubMed Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage Phi29 DNA polymerase. J Virol Methods 116:209–211CrossRefPubMed
21.
go back to reference Katoh K, Misawa K, Kuma K-I, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059–3066CrossRefPubMed Katoh K, Misawa K, Kuma K-I, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059–3066CrossRefPubMed
22.
go back to reference Laufs J, Traut W, Heyraud F, Matzeit V, Rogers SG, Schell J, Gronenborn B (1995) In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc Nat Acad Sci USA 92:3879–3883CrossRefPubMed Laufs J, Traut W, Heyraud F, Matzeit V, Rogers SG, Schell J, Gronenborn B (1995) In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc Nat Acad Sci USA 92:3879–3883CrossRefPubMed
23.
go back to reference Lopez-Bueno A, Tamames J, Velasquez D, Moya A, Quesada A, Alcami A (2009) High diversity in the viral community from an Antarctic lake. Science 326:858–861CrossRefPubMed Lopez-Bueno A, Tamames J, Velasquez D, Moya A, Quesada A, Alcami A (2009) High diversity in the viral community from an Antarctic lake. Science 326:858–861CrossRefPubMed
24.
go back to reference Nawaz-ul-Rehman MS (2009) Maintenance of an Old World betasatellite by a New World helper Begomovirus and possible rapid adaptation of the betasatellite. J Virol 83:9347–9355CrossRefPubMed Nawaz-ul-Rehman MS (2009) Maintenance of an Old World betasatellite by a New World helper Begomovirus and possible rapid adaptation of the betasatellite. J Virol 83:9347–9355CrossRefPubMed
25.
go back to reference Nawaz-ul-Rehman MS, Fauquet CM (2009) Evolution of geminiviruses and their satellites. FEBS Lett 583:1825–1832CrossRefPubMed Nawaz-ul-Rehman MS, Fauquet CM (2009) Evolution of geminiviruses and their satellites. FEBS Lett 583:1825–1832CrossRefPubMed
26.
go back to reference Patil BL, Fauquet CM (2010) Differential interaction between cassava mosaic geminiviruses and geminivirus satellites. J Gen Virol, (in press) Patil BL, Fauquet CM (2010) Differential interaction between cassava mosaic geminiviruses and geminivirus satellites. J Gen Virol, (in press)
27.
go back to reference Ramírez P, Chicas M, Salas J, Maxwell D, Karkashian J (2004) Identificación de un nuevo begomovirus en melón (Cucumis melo L.) en Lara, Venezuela. Manejo Integrado de Plagas y Agroecología (Costa Rica) 72:22–30 Ramírez P, Chicas M, Salas J, Maxwell D, Karkashian J (2004) Identificación de un nuevo begomovirus en melón (Cucumis melo L.) en Lara, Venezuela. Manejo Integrado de Plagas y Agroecología (Costa Rica) 72:22–30
28.
go back to reference Rohde W, Randles J, Langride P, Hanold D (1990) Nucleotide sequence of a circular single-stranded DNA associated with coconut foliar decay virus. Virology 176:648–651CrossRefPubMed Rohde W, Randles J, Langride P, Hanold D (1990) Nucleotide sequence of a circular single-stranded DNA associated with coconut foliar decay virus. Virology 176:648–651CrossRefPubMed
29.
go back to reference Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347CrossRef
30.
go back to reference Saeed M, Behjatnia A, Mansoor S, Zafar Y, Hasnain S, Rezaian A (2005) A single complementary-sense transcript of a geminiviral DNA beta satellite is determinant of pathogenicity. Mol Plant Microbe Interact 18:7–14CrossRefPubMed Saeed M, Behjatnia A, Mansoor S, Zafar Y, Hasnain S, Rezaian A (2005) A single complementary-sense transcript of a geminiviral DNA beta satellite is determinant of pathogenicity. Mol Plant Microbe Interact 18:7–14CrossRefPubMed
31.
go back to reference Saeed M, Zafar Y, Randles JW, Rezaian MA (2007) A monopartite begomovirus-associated DNA beta satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. J Gen Virol 88:2881–2889CrossRefPubMed Saeed M, Zafar Y, Randles JW, Rezaian MA (2007) A monopartite begomovirus-associated DNA beta satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. J Gen Virol 88:2881–2889CrossRefPubMed
32.
go back to reference Saunders K, Bedford ID, Briddon RW, Markham PG, Wong S-M, Stanley J (2000) A unique virus complex causes Ageratum yellow vein disease. Proc Nat Acad Sci USA 97:6890–6895CrossRefPubMed Saunders K, Bedford ID, Briddon RW, Markham PG, Wong S-M, Stanley J (2000) A unique virus complex causes Ageratum yellow vein disease. Proc Nat Acad Sci USA 97:6890–6895CrossRefPubMed
33.
go back to reference Saunders K, Bedford ID, Stanley J (2002) Adaptation from whitefly to leafhopper transmission of an autonomously replicating nanovirus-like DNA component associated with ageratum yellow vein disease. J Gen Virol 83:907–913PubMed Saunders K, Bedford ID, Stanley J (2002) Adaptation from whitefly to leafhopper transmission of an autonomously replicating nanovirus-like DNA component associated with ageratum yellow vein disease. J Gen Virol 83:907–913PubMed
34.
go back to reference Stenger DC, Revington GN, Stevenson MC, Bisaro DM (1991) Replication release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc Nat Acad Sci USA 88:8029–8033CrossRefPubMed Stenger DC, Revington GN, Stevenson MC, Bisaro DM (1991) Replication release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc Nat Acad Sci USA 88:8029–8033CrossRefPubMed
35.
go back to reference Wyatt SD, Brown JK (1996) Detection of Subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef Wyatt SD, Brown JK (1996) Detection of Subgroup III geminivirus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86:1288–1293CrossRef
Metadata
Title
Association of an atypical alphasatellite with a bipartite New World begomovirus
Authors
G. Romay
D. Chirinos
F. Geraud-Pouey
C. Desbiez
Publication date
01-11-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 11/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-010-0760-7

Other articles of this Issue 11/2010

Archives of Virology 11/2010 Go to the issue