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Archives of Virology
Published in: Archives of Virology 3/2016

01-03-2016 | Annotated Sequence Record

Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing

Authors: Thierry Candresse, Armelle Marais, Roberto Sorrentino, Chantal Faure, Sébastien Theil, Valérie Cadot, Mathieu Rolland, Julie Villemot, Frank Rabenstein

Published in: Archives of Virology | Issue 3/2016

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Abstract

Endornaviruses are unusual plant-, fungus- and oomycete-infecting viruses with a large, ca 14- to 17-kb linear double-stranded RNA (dsRNA) genome and a persistent lifestyle. The complete genome sequence of an endornavirus from the barley (Hordeum vulgare) Nerz variety was determined from paired Illumina MySeq reads derived from purified dsRNAs. The genome is 14,243 nt long, with 5’ and 3’ non-coding regions of 207 and 47 nt, respectively. It encodes a single large protein of 4663 amino acids that carries conserved motifs for a methyltransferase, a helicase and an RNA-dependent RNA polymerase. The sequence of Hordeum vulgare endornavirus (HvEV) carries all the hallmarks of a typical member of the genus Endornavirus, with the exception of an UDP-glycosyltransferase motif observed in many, but not all, endornaviral genomes.
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Metadata
Title
Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing
Authors
Thierry Candresse
Armelle Marais
Roberto Sorrentino
Chantal Faure
Sébastien Theil
Valérie Cadot
Mathieu Rolland
Julie Villemot
Frank Rabenstein
Publication date
01-03-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2709-3

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