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Archives of Virology
Published in: Archives of Virology 6/2014

01-06-2014 | Brief Report

Genetic variation analysis of apple chlorotic leaf spot virus coat protein reveals a new phylogenetic type and two recombinants in China

Authors: Shanyi Chen, Ying Zhou, Ting Ye, Lu Hao, Liyun Guo, Zaifeng Fan, Shifang Li, Tao Zhou

Published in: Archives of Virology | Issue 6/2014

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Abstract

In this study, we generated sequences of the apple chlorotic leaf spot virus (ACLSV) coat protein (CP) gene. Genetic variation and phylogenetic analyses were carried out on these sequences along with others reported previously. ACLSV populations clustered into four types: in three of the four types, combinations of three amino acids at positions of 40, 75 and 79 were conserved. The fourth phylogenetic type, newly identified here, was characterized by co-variation of Ser40-Tyr75-Ser79. Statistically significant genetic differentiation and infrequent gene flow were detected among the four types. Two natural recombinants were detected for the first time among ACLSV isolates/genotypes from China.
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Metadata
Title
Genetic variation analysis of apple chlorotic leaf spot virus coat protein reveals a new phylogenetic type and two recombinants in China
Authors
Shanyi Chen
Ying Zhou
Ting Ye
Lu Hao
Liyun Guo
Zaifeng Fan
Shifang Li
Tao Zhou
Publication date
01-06-2014
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 6/2014
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1927-9

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