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Archives of Virology
Published in: Archives of Virology 6/2014

01-06-2014 | Brief Report

Prevalence and genetic diversity of bovine kobuvirus in China

Authors: Jitao Chang, Qian Wang, Fang Wang, Zhigang Jiang, Yue Liu, Li Yu

Published in: Archives of Virology | Issue 6/2014

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Abstract

A total of 166 faecal specimens from diarrheic cattle were collected in China for detection of bovine kobuvirus (BKV) by reverse transcription PCR (RT-PCR) targeting the region a portion of the 3D nonstructural protein, with an amplicon size of 631 bp. The RNA corresponding to the BKV 3D region was detected in 34.9 % of faecal samples (58/166) in four major dairy-cattle-production areas in China, and sequence analysis based on the partial 3D sequences (35/58) indicated that the Chinese BKVs shared 88.9-96.2 % nucleotide sequence identity to BKV reference strains. Further phylogenetic analysis based on the complete VP1-encoding sequences (17/35) revealed that the Chinese BKVs shared 81-83.4 % nucleotide sequence identity to the U-1 strain, and these Chinese BKV strains, together with the U-1 strain, are apparently divided into four lineages, representing four genotypes of BKV, designated as A, B, C and D. Our results show that BKV infection is widely distributed, with high genetic diversity in China.
Literature
1.
Alcala A, Vizzi E, Rodriguez-Diaz J, Zambrano JL, Betancourt W, Liprandi F (2010) Molecular detection and characterization of Aichi viruses in sewage-polluted waters of Venezuela. Appl Environ Microbiol 76:4113–4115PubMedCentralPubMedCrossRef
2.
Ambert-Balay K, Lorrot M, Bon F, Giraudon H, Kaplon J, Wolfer M, Lebon P, Gendrel D, Pothier P (2008) Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients. J Clin Microbiol 46:1252–1258PubMedCentralPubMedCrossRef
3.
Barry AF, Ribeiro J, Alfieri AF, van der Poel WH, Alfieri AA (2011) First detection of kobuvirus in farm animals in Brazil and the Netherlands. Infect Genet Evol 11:1811–1814PubMedCrossRef
4.
Carmona-Vicente N, Buesa J, Brown PA, Merga JY, Darby AC, Stavisky J, Sadler L, Gaskell RM, Dawson S, Radford AD (2013) Phylogeny and prevalence of kobuviruses in dogs and cats in the UK. Vet Microbiol 164:246–252PubMedCrossRef
5.
Chung JY, Kim SH, Kim YH, Lee MH, Lee KK, Oem JK (2013) Detection and genetic characterization of feline kobuviruses. Virus Genes 47:559–562
6.
Di Martino B, Di Profio F, Di Felice E, Ceci C, Pistilli MG, Marsilio F (2012) Molecular detection of bovine kobuviruses in Italy. Arch Virol 157:2393–2396PubMedCrossRef
7.
Di Martino B, Di Felice E, Ceci C, Di Profio F, Marsilio F (2013) Canine kobuviruses in diarrhoeic dogs in Italy. Vet Microbiol 166:246–249PubMedCrossRef
8.
Di Profio F, Ceci C, Di Felice E, Marsilio F, Di Martino B (2013) Molecular detection of porcine kobuviruses in Italian swine. Res Vet Sci 95:782–785
9.
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL (2009) The complete genome of klassevirus: a novel picornavirus in pediatric stool. Virol J 6:82PubMedCentralPubMedCrossRef
10.
Holtz LR, Finkbeiner SR, Zhao G, Kirkwood CD, Girones R, Pipas JM, Wang D (2009) Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol J 6:86PubMedCentralPubMedCrossRef
11.
Jeoung HY, Lim JA, Jeong W, Oem JK, An DJ (2011) Three clusters of bovine kobuvirus isolated in Korea, 2008–2010. Virus Genes 42:402–406PubMedCrossRef
12.
Kapoor A, Simmonds P, Dubovi EJ, Qaisar N, Henriquez JA, Medina J, Shields S, Lipkin WI (2011) Characterization of a canine homolog of human Aichi virus. J Virol 85:11520–11525PubMedCentralPubMedCrossRef
13.
Khamrin P, Maneekarn N, Peerakome S, Okitsu S, Mizuguchi M, Ushijima H (2008) Bovine kobuviruses from cattle with diarrhea. Emerg Infect Dis 14:985–986PubMedCentralPubMedCrossRef
14.
15.
Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infect Genet Evol 10:950–954PubMedCrossRef
16.
King AMQ, Brown F, Christian P et al (1999) Picornaviridae. In: van Regenmortel MHV, Faquet CM, Bishop DHL, Carsten EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) Virus taxonomy: seventh report of the international committee on taxonomy of viruses. Academic Press Inc., New York
17.
Kitajima M, Haramoto E, Phanuwan C, Katayama H (2011) Prevalence and genetic diversity of Aichi viruses in wastewater and river water in Japan. Appl Environ Microbiol 77:2184–2187PubMedCentralPubMedCrossRef
18.
Lee MH, Jeoung HY, Lim JA, Song JY, Song DS, An DJ (2012) Kobuvirus in South Korean black goats. Virus Genes 45:186–189PubMedCrossRef
19.
20.
Mauroy A, Scipioni A, Mathijs E, Thys C, Thiry E (2009) Molecular detection of kobuviruses and recombinant noroviruses in cattle in continental Europe. Arch Virol 154:1841–1845PubMedCrossRef
21.
Oh DY, Silva PA, Hauroeder B, Diedrich S, Cardoso DD, Schreier E (2006) Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch Virol 151:1199–1206PubMedCrossRef
22.
Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155:1803–1811PubMedCrossRef
23.
Park SJ, Kim HK, Song DS, Moon HJ, Park BK (2011) Molecular detection and genetic characterization of kobuviruses in fecal samples collected from diarrheic cattle in Korea. Infect Genet Evol 11:1178–1182PubMedCrossRef
24.
Pham NT, Khamrin P, Nguyen TA, Kanti DS, Phan TG, Okitsu S, Ushijima H (2007) Isolation and molecular characterization of Aichi viruses from fecal specimens collected in Japan, Bangladesh, Thailand, and Vietnam. J Clin Microbiol 45:2287–2288PubMedCentralPubMedCrossRef
25.
Pham NT, Trinh QD, Khamrin P, Nguyen TA, Dey SK, Phan TG, le Hoang P, Maneekarn N, Okitsu S, Mizuguchi M, Ushijima H (2008) Sequence analysis of the capsid gene of Aichi viruses detected from Japan, Bangladesh, Thailand, and Vietnam. J Med Virol 80:1222–1227PubMedCrossRef
26.
27.
28.
Reuter G, Boldizsar A, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154:101–108PubMedCrossRef
29.
30.
31.
Reuter G, Boros A, Pankovics P (2011) Kobuviruses: a comprehensive review. Rev Med Virol 21:32–41PubMedCrossRef
32.
Ribeiro J, de Arruda Leme R, Alfieri AF, Alfieri AA (2013) High frequency of Aichivirus C (porcine kobuvirus) infection in piglets from different geographic regions of Brazil. Trop Anim Health Prod 45:1757–1762
33.
Sasaki J, Kusuhara Y, Maeno Y, Kobayashi N, Yamashita T, Sakae K, Takeda N, Taniguchi K (2001) Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5’ end of the genome. J Virol 75:8021–8030PubMedCentralPubMedCrossRef
34.
Sdiri-Loulizi K, Hassine M, Gharbi-Khelifi H, Sakly N, Chouchane S, Guediche MN, Pothier P, Aouni M, Ambert-Balay K (2009) Detection and genomic characterization of Aichi viruses in stool samples from children in Monastir, Tunisia. J Clin Microbiol 47:2275–2278PubMedCentralPubMedCrossRef
35.
Sdiri-Loulizi K, Hassine M, Aouni Z, Gharbi-Khelifi H, Sakly N, Chouchane S, Guediche MN, Pothier P, Aouni M, Ambert-Balay K (2010) First molecular detection of Aichi virus in sewage and shellfish samples in the Monastir region of Tunisia. Arch Virol 155:1509–1513PubMedCrossRef
36.
Shi D, Zhang S, Chen J, Shi H, Zhang X, Feng L (2013) Molecular characterization of a porcine kobuvirus variant strain in China. Arch Virol 158:2379–2383
37.
Sisay Z, Wang Q, Oka T, Saif L (2013) Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine. Arch Virol 158:1583–1588PubMedCrossRef
38.
Smits SL, Raj VS, Oduber MD, Schapendonk CM, Bodewes R, Provacia L, Stittelaar KJ, Osterhaus AD, Haagmans BL (2013) Metagenomic analysis of the ferret fecal viral flora. PLoS One 8:e71595PubMedCentralPubMedCrossRef
39.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCentralPubMedCrossRef
40.
Verma H, Mor SK, Abdel-Glil MY, Goyal SM (2013) Identification and molecular characterization of porcine kobuvirus in U.S. swine. Virus Genes 46:551–553PubMedCrossRef
41.
Yamashita T, Kobayashi S, Sakae K, Nakata S, Chiba S, Ishihara Y, Isomura S (1991) Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J Infect Dis 164:954–957PubMedCrossRef
42.
Yamashita T, Sakae K, Tsuzuki H, Suzuki Y, Ishikawa N, Takeda N, Miyamura T, Yamazaki S (1998) Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J Virol 72:8408–8412PubMedCentralPubMed
43.
Yamashita T, Sugiyama M, Tsuzuki H, Sakae K, Suzuki Y, Miyazaki Y (2000) Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans. J Clin Microbiol 38:2955–2961PubMedCentralPubMed
44.
Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K (2003) Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84:3069–3077PubMedCrossRef
45.
Yu JM, Jin M, Zhang Q, Li HY, Li DD, Xu ZQ, Li JS, Cui SX, Yang SH, Liu N, Duan ZJ (2009) Candidate porcine Kobuvirus, China. Emerg Infect Dis 15:823–825PubMedCentralPubMedCrossRef
46.
Zhang Q, Hu R, Tang X, Wu C, He Q, Zhao Z, Chen H, Wu B (2013) Occurrence and investigation of enteric viral infections in pigs with diarrhea in China. Arch Virol 158:1631–1636
Metadata
Title
Prevalence and genetic diversity of bovine kobuvirus in China
Authors
Jitao Chang
Qian Wang
Fang Wang
Zhigang Jiang
Yue Liu
Li Yu
Publication date
01-06-2014
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 6/2014
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1961-7

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