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Archives of Virology
Published in: Archives of Virology 7/2011

01-07-2011 | Annotated Sequence Record

A novel monopartite begomovirus infecting sweet potato in Brazil

Authors: Leonardo C. Albuquerque, Alice K. Inoue-Nagata, Bruna Pinheiro, Simone da G. Ribeiro, Renato O. Resende, Enrique Moriones, Jesús Navas-Castillo

Published in: Archives of Virology | Issue 7/2011

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Abstract

The complete genome sequences of two monopartite begomovirus isolates (genus Begomovirus, family Geminiviridae) present in a single sweet potato (Ipomoea batatas) plant collected in São Paulo, Brazil, are presented. Based on the current taxonomic criteria for the genus Begomovirus, one of the isolates was shown to represent a novel species, tentatively named Sweet potato leaf curl Sao Paulo virus (SPLCSPV). The other isolate represented a new strain of sweet potato leaf curl virus, named sweet potato leaf curl virus-Sao Paulo (SPLCV-SP). The full genome sequence of the SPLCSPV isolate shared the highest nucleotide identity (87.6%) with isolates of sweet potato leaf curl Spain virus (SPLCESV). Phylogenetic and recombination analyses were used to investigate the relationships of these isolates to other monopartite Ipomoea-infecting begomoviruses.
Literature
1.
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
2.
Fauquet CM, Stanley J (2003) Geminivirus classification and nomenclature: progress and problems. Ann Appl Biol 142:165–189CrossRef
3.
Fuentes SL, Salazar LF (2002) First report of Sweet potato leaf curl virus in Peru. Plant Dis 87:98CrossRef
4.
Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V—improved software for multiple sequence alignment. Comput Appl Biosci 8:189–191PubMed
5.
Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage φ29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef
6.
Lotrakul P, Valverde RA, Clark CA, Sim J, de La Torre R (1998) Detection of a geminivirus infecting sweet potato in the United States. Plant Dis 82:1253–1257CrossRef
7.
8.
Lotrakul P, Valverde RA, Clark CA, Fauquet CM (2003) Properties of a begomovirus isolated from sweet potato [Ipomoea batatas (L.) Lam.] infected with Sweet potato leaf curl virus. Rev Mex Fitopatol 21:128–136
9.
Lozano G, Trenado HP, Valverde RA, Navas-Castillo J (2009) Novel begomovirus species of recombinant nature in sweet potato (Ipomoea batatas) and Ipomoea indica: taxonomic and phylogenetic implications. J Gen Virol 90:2550–2562PubMedCrossRef
10.
Luan YS, Zhang J, Liu DM, Li WL (2007) Molecular characterization of sweet potato leaf curl virus isolate from China (SPLCV-CN) and its phylogenetic relationship with other members of the Geminiviridae. Virus Genes 35:379–385PubMedCrossRef
11.
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Comput Appl Biosci 26:2462–2463
12.
Padidam M, Sawyer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265:218–225PubMedCrossRef
13.
Paprotka T, Boiteux LS, Fonseca MEN, Resende RO, Jeske H, Faria JC, Ribeiro SG (2010) Genomic diversity of sweet potato geminiviruses in a Brazilian germplasm bank. Virus Res 149:224–233PubMedCrossRef
14.
Sanz AI, Fraile A, García-Arenal F, Zhou X, Robinson DJ, Khalid S, Butt T, Harrison BD (2000) Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. J Gen Virol 81:1839–1849PubMed
15.
Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, Rybicki EP, Stenger DC (2005) Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy, VIIIth report of the ICTV. Elsevier/Academic Press, London, pp 301–326
16.
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef
17.
Varsani A, Shepherd DN, Dent K, Monjane AL, Rybicki EP, Martin DP (2009) A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family. Virol J 6:36PubMedCrossRef
18.
Yazdi HRB, Heidarnejad J, Massumi H (2008) Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide. Virus Genes 36:539–545PubMedCrossRef
Metadata
Title
A novel monopartite begomovirus infecting sweet potato in Brazil
Authors
Leonardo C. Albuquerque
Alice K. Inoue-Nagata
Bruna Pinheiro
Simone da G. Ribeiro
Renato O. Resende
Enrique Moriones
Jesús Navas-Castillo
Publication date
01-07-2011
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 7/2011
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1016-x

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