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Archives of Virology
Published in: Archives of Virology 7/2011

01-07-2011 | Original Article

Genetic characterization of a novel calicivirus from a chicken

Authors: Sandro Wolf, Jochen Reetz, Peter Otto

Published in: Archives of Virology | Issue 7/2011

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Abstract

We describe the identification and genetic characterization of a novel enteric calicivirus, detected by transmission electron microscopy and RT-PCR in two clinically normal chickens and in a chicken with runting and stunting syndrome from different flocks in southern Germany. Positive findings were confirmed by sequencing. The complete nucleotide sequence and genome organization of one strain (Bavaria/04V0021) was determined. The genome of the Bavaria virus is 7,908 nt long and contains two coding open reading frames. Phylogenetic analysis of the deduced partial 2C helicase/NTPase, 3C cysteine protease, RNA-dependent RNA polymerase and complete VP1 capsid protein amino acid sequences showed that the virus is genetically related to but distinct from sapoviruses and lagoviruses. Morphologically, the Bavaria virus particles are 37-42 nm in diameter and exhibit characteristic cup-shaped surface depressions.
Literature
1.
Carstens EB (2010) Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009). Arch Virol 155:133–146PubMedCrossRef
2.
Green KY, Ando T, Balayan MS, Berke T, Clarke IN, Estes MK, Matson DO, Nakata S, Neill JD, Studdert MJ, Thiel HJ (2000) Taxonomy of the caliciviruses. J Infect Dis 181(Suppl 2):S322–S330PubMedCrossRef
3.
Farkas T, Sestak K, Wei C, Jiang X (2008) Characterization of a rhesus monkey calicivirus representing a new genus of Caliciviridae. J Virol 82:5408–5416PubMedCrossRef
4.
L’Homme Y, Sansregret R, Plante-Fortier E, Lamontagne AM, Ouardani M, Lacroix G, Simard C (2009) Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae. Virus Genes 39:66–75PubMedCrossRef
5.
Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di Bartolo I, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskemeti S, Halaihel N et al (2010) Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48:363–368PubMedCrossRef
6.
Wolf S, Williamson W, Hewitt J, Lin S, Rivera-Aban M, Ball A, Scholes P, Savill M, Greening GE (2009) Molecular detection of norovirus in sheep and pigs in New Zealand farms. Vet Microbiol 133:184–189PubMedCrossRef
7.
Reuter G, Pankovics P, Egyed L (2009) Detection of genotype 1 and 2 bovine noroviruses in Hungary. Vet Rec 165:537–538PubMedCrossRef
8.
9.
Koopmans M (2008) Progress in understanding norovirus epidemiology. Curr Opin Infect Dis 21:544–552PubMedCrossRef
10.
Smith AW, Skilling DE, Cherry N, Mead JH, Matson DO (1998) Calicivirus emergence from ocean reservoirs: zoonotic and interspecies movements. Emerg Infect Dis 4:13–20PubMedCrossRef
11.
Guo M, Evermann JF, Saif LJ (2001) Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink. Arch Virol 146:479–493PubMedCrossRef
12.
Poet SE, Skilling DE, Megyesl JL, Gilmartin WG, Smith AW (1996) Detection of a non-cultivatable calicivirus from the white tern (Gygis alba rothschildi). J Wildl Dis 32:461–467PubMed
13.
Sironi G (1994) Concurrent calicivirus and Isospora lacazei infections in goldfinches (Carduelis carduelis). Vet Rec 134:196PubMedCrossRef
14.
Cubitt WD, Barrett AD (1985) Propagation and preliminary characterization of a chicken candidate calicivirus. J Gen Virol 66(Pt 7):1431–1438PubMedCrossRef
15.
16.
Gough RE, Drury SE, Bygrave AC, Mechie SC (1992) Detection of caliciviruses from pheasants with enteritis. Vet Rec 131:290–291PubMedCrossRef
17.
Toffam A, Bano L, Montesi F, Beato MS, De Nardi R, Terregino C, Capua I (2005) Detection of Caliciviruses in young pheasants (Phasianus colchicus) with enteritis in Italy. Ital J Anim Sci 4:300–302
18.
Gough RE, Spackman D (1981) Virus-like particles associated with disease in guinea fowl. Vet Rec 109:497PubMedCrossRef
19.
Morrow CJ, Samu G, Matrai E, Klausz A, Wood AM, Richter S, Jaskulska B, Hess M (2008) Avian hepatitis E virus infection and possible associated clinical disease in broiler breeder flocks in Hungary. Avian Pathol 37:527–535PubMedCrossRef
20.
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599PubMedCrossRef
21.
Meyers G, Wirblich C, Thiel HJ, Thumfart JO (2000) Rabbit hemorrhagic disease virus: genome organization and polyprotein processing of a calicivirus studied after transient expression of cDNA constructs. Virology 276:349–363PubMedCrossRef
22.
Strive T, Wright JD, Robinson AJ (2009) Identification and partial characterisation of a new Lagovirus in Australian wild rabbits. Virology 384:97–105PubMedCrossRef
23.
Guo M, Chang KO, Hardy ME, Zhang Q, Parwani AV, Saif LJ (1999) Molecular characterization of a porcine enteric calicivirus genetically related to Sapporo-like human caliciviruses. J Virol 73:9625–9631PubMed
24.
Jeong C, Park SI, Park SH, Kim HH, Park SJ, Jeong JH, Choy HE, Saif LJ, Kim SK, Kang MI et al (2007) Genetic diversity of porcine sapoviruses. Vet Microbiol 122:246–257PubMedCrossRef
25.
Green KY, Chanock RM, Kapikian AZ (2001) Human calicivirus. In Knipe HP (ed) Fields virology, vol 1, 4th edn. Lippincott Williams & Wilkins, Philadelphia, pp 841–874
26.
Hansman GS, Oka T, Katayama K, Takeda N (2007) Human sapoviruses: genetic diversity, recombination, and classification. Rev Med Virol 17:133–141PubMedCrossRef
27.
McIntosh MT, Behan SC, Mohamed FM, Lu Z, Moran KE, Burrage TG, Neilan JG, Ward GB, Botti G, Capucci L, Metwally SA (2007) A pandemic strain of calicivirus threatens rabbit industries in the Americas. Virol J 4:96PubMedCrossRef
28.
Pesavento PA, Chang KO, Parker JS (2008) Molecular virology of feline calicivirus. Vet Clin North Am Small Anim Pract 38:775–786, vii
29.
Kurth A, Evermann JF, Skilling DE, Matson DO, Smith AW (2006) Prevalence of vesivirus in a laboratory-based set of serum samples obtained from dairy and beef cattle. Am J Vet Res 67:114–119PubMedCrossRef
30.
Edwards JF, Yedloutschnig RJ, Dardiri AH, Callis JJ (1987) Vesicular exanthema of swine virus: isolation and serotyping of field samples. Can J Vet Res 51:358–362PubMed
31.
Martella V, Campolo M, Lorusso E, Cavicchio P, Camero M, Bellacicco AL, Decaro N, Elia G, Greco G, Corrente M et al (2007) Norovirus in captive lion cub (Panthera leo). Emerg Infect Dis 13:1071–1073PubMed
32.
Martella V, Lorusso E, Decaro N, Elia G, Radogna A, D’Abramo M, Desario C, Cavalli A, Corrente M, Camero M et al (2008) Detection and molecular characterization of a canine norovirus. Emerg Infect Dis 14:1306–1308PubMedCrossRef
33.
Neill JD, Meyer RF, Seal BS (1995) Genetic relatedness of the caliciviruses: San Miguel sea lion and vesicular exanthema of swine viruses constitute a single genotype within the Caliciviridae. J Virol 69:4484–4488PubMed
34.
Seal BS, Lutze-Wallace C, Kreutz LC, Sapp T, Dulac GC, Neill JD (1995) Isolation of caliciviruses from skunks that are antigenically and genotypically related to San Miguel sea lion virus. Virus Res 37:1–12PubMedCrossRef
35.
van der Poel WH, van der Heide R, Verschoor F, Gelderblom H, Vinje J, Koopmans MP (2003) Epidemiology of Norwalk-like virus infections in cattle in The Netherlands. Vet Microbiol 92:297–309PubMedCrossRef
36.
Wang QH, Costantini V, Saif LJ (2007) Porcine enteric caliciviruses: genetic and antigenic relatedness to human caliciviruses, diagnosis and epidemiology. Vaccine 25:5453–5466PubMedCrossRef
37.
Karst SM, Wobus CE, Lay M, Davidson J (2003) Virgin HWt: STAT1-dependent innate immunity to a Norwalk-like virus. Science 299:1575–1578PubMedCrossRef
38.
Radford AD, Coyne KP, Dawson S, Porter CJ, Gaskell RM (2007) Feline calicivirus. Vet Res 38:319–335PubMedCrossRef
39.
Hurley KF, Sykes JE (2003) Update on feline calicivirus: new trends. Vet Clin North Am Small Anim Pract 33:759–772PubMedCrossRef
40.
Cooke BD (2002) Rabbit haemorrhagic disease: field epidemiology and the management of wild rabbit populations. Rev Sci Tech 21:347–358PubMed
41.
van Der Poel WH, Vinje J, van Der Heide R, Herrera MI, Vivo A, Koopmans MP (2000) Norwalk-like calicivirus genes in farm animals. Emerg Infect Dis 6:36–41
42.
Vinje J, Altena SA, Koopmans MP (1997) The incidence and genetic variability of small round-structured viruses in outbreaks of gastroenteritis in The Netherlands. J Infect Dis 176:1374–1378PubMedCrossRef
Metadata
Title
Genetic characterization of a novel calicivirus from a chicken
Authors
Sandro Wolf
Jochen Reetz
Peter Otto
Publication date
01-07-2011
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 7/2011
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-0964-5

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