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Published in: International Journal of Legal Medicine 3/2008

01-05-2008 | Original Article

Single lymphocytes from two healthy individuals with mitochondrial point heteroplasmy are mainly homoplasmic

Authors: Sabine Lutz-Bonengel, Timo Sänger, Walther Parson, Helena Müller, Joachim W. Ellwart, Marie Follo, Bernhard Bonengel, Harald Niederstätter, Marielle Heinrich, Ulrike Schmidt

Published in: International Journal of Legal Medicine | Issue 3/2008

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Abstract

The nature of mitochondrial DNA heteroplasmy is still unclear. It could either be caused by two mitochondrial DNA (mtDNA) haplotypes coexisting within a single cell or by an admixture of homoplasmic cells, each of which contains only one type of mtDNA molecule. To address this question, single lymphocytes were separated by flow cytometry assisted cell sorting and analyzed by cycle sequencing or minisequencing. To attain the required PCR sensitivity, the reactions were carried out on the surface of chemically structured glass slides in a reaction volume of 1–2 μl. In this study, blood samples from two healthy donors showing mitochondrial point heteroplasmy in direct sequencing (195Y and 234R, respectively) were analyzed. Nearly 96% of single lymphocytes tested were found to be in a homoplasmic state, but heteroplasmic cells were also detected. These results suggest that mitochondrial point heteroplasmy in blood may well be mainly due to the mixture of homoplasmic cells.
Literature
1.
go back to reference Alonso A, Salas A, Albarran C et al (2002) Results of the 1999–2000 collaborative exercise and proficiency testing program on mitochondrial DNA of the GEP-ISFG: an inter-laboratory study of the observed variability in the heteroplasmy level of hair from the same donor. Forensic Sci Int 125:1–7PubMedCrossRef Alonso A, Salas A, Albarran C et al (2002) Results of the 1999–2000 collaborative exercise and proficiency testing program on mitochondrial DNA of the GEP-ISFG: an inter-laboratory study of the observed variability in the heteroplasmy level of hair from the same donor. Forensic Sci Int 125:1–7PubMedCrossRef
2.
go back to reference Melton T (2004) Mitochondrial DNA heteroplasmy. Forensic Sci Rev 16:1–20 Melton T (2004) Mitochondrial DNA heteroplasmy. Forensic Sci Rev 16:1–20
3.
go back to reference Bendall KE, Sykes BC (1995) Length heteroplasmy in the first hypervariable segment of the human mtDNA control region. Am J Hum Genet 57:248–256PubMed Bendall KE, Sykes BC (1995) Length heteroplasmy in the first hypervariable segment of the human mtDNA control region. Am J Hum Genet 57:248–256PubMed
4.
go back to reference Bendall KE, Macaulay VA, Baker JR, Sykes BC (1996) Heteroplasmic point mutations in the human mtDNA control region. Am J Hum Genet 59:1276–1287PubMed Bendall KE, Macaulay VA, Baker JR, Sykes BC (1996) Heteroplasmic point mutations in the human mtDNA control region. Am J Hum Genet 59:1276–1287PubMed
5.
go back to reference Marchington DR, Hartshorne GM, Barlow D, Poulton J (1997) Homopolymeric tract heteroplasmy in mtDNA from tissues and single oocytes: support for a genetic bottleneck. Am J Hum Genet 60:408–416PubMed Marchington DR, Hartshorne GM, Barlow D, Poulton J (1997) Homopolymeric tract heteroplasmy in mtDNA from tissues and single oocytes: support for a genetic bottleneck. Am J Hum Genet 60:408–416PubMed
6.
go back to reference Chinnery PF, Thorburn DR, Samuels DC et al (2000) The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both. Trends Genet 16:500–505PubMedCrossRef Chinnery PF, Thorburn DR, Samuels DC et al (2000) The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both. Trends Genet 16:500–505PubMedCrossRef
8.
go back to reference Hühne J, Pfeiffer H, Waterkamp K, Brinkmann B (1999) Mitochondrial DNA in human hair shafts—existence of intra-individual differences. Int J Legal Med 112:172–175PubMedCrossRef Hühne J, Pfeiffer H, Waterkamp K, Brinkmann B (1999) Mitochondrial DNA in human hair shafts—existence of intra-individual differences. Int J Legal Med 112:172–175PubMedCrossRef
9.
go back to reference Monnat RJ, Reay D (1986) Nucleotide sequence identity of mitochondrial DNA from different human tissues. Gene 43:205–211PubMedCrossRef Monnat RJ, Reay D (1986) Nucleotide sequence identity of mitochondrial DNA from different human tissues. Gene 43:205–211PubMedCrossRef
10.
go back to reference Wilson MR, Polanskey D, Butler J, DiZinno JA, Replogle J, Budowle B (1995) Extraction, PCR amplification and sequencing of mitochondrial DNA from human hair shafts. Biotechniques 18:662–669PubMed Wilson MR, Polanskey D, Butler J, DiZinno JA, Replogle J, Budowle B (1995) Extraction, PCR amplification and sequencing of mitochondrial DNA from human hair shafts. Biotechniques 18:662–669PubMed
11.
go back to reference Calloway CD, Reynolds RL, Herrin GL Jr, Anderson WW (2000) The frequency of heteroplasmy in the HVII region differs across tissue types and increases with age. Am J Hum Genet 66:1384–1397PubMedCrossRef Calloway CD, Reynolds RL, Herrin GL Jr, Anderson WW (2000) The frequency of heteroplasmy in the HVII region differs across tissue types and increases with age. Am J Hum Genet 66:1384–1397PubMedCrossRef
12.
go back to reference Gocke CD, Benko FA, Roga (1998) Transmission of mitochondrial DNA heteroplasmy in normal pedigrees. Hum Genet 102:182–186PubMedCrossRef Gocke CD, Benko FA, Roga (1998) Transmission of mitochondrial DNA heteroplasmy in normal pedigrees. Hum Genet 102:182–186PubMedCrossRef
13.
go back to reference Howell N, Smejkal CB (2000) Persistent heteroplasmy of a mutation in the human mtDNA control region: hypermutation as an apparent consequence of simple-repeat expansion/contraction. Am J Hum Genet 66:1589–1598PubMedCrossRef Howell N, Smejkal CB (2000) Persistent heteroplasmy of a mutation in the human mtDNA control region: hypermutation as an apparent consequence of simple-repeat expansion/contraction. Am J Hum Genet 66:1589–1598PubMedCrossRef
14.
go back to reference Tully LA, Parsons TJ, Steighner RJ, Holland MM, Marino MA, Prenger VL (2000) A sensitive denaturing gradient-gel electrophoresis assay reveals a high frequency of heteroplasmy in hypervariable region 1 of the human mtDNA control region. Am J Hum Genet 67:432–443PubMedCrossRef Tully LA, Parsons TJ, Steighner RJ, Holland MM, Marino MA, Prenger VL (2000) A sensitive denaturing gradient-gel electrophoresis assay reveals a high frequency of heteroplasmy in hypervariable region 1 of the human mtDNA control region. Am J Hum Genet 67:432–443PubMedCrossRef
15.
go back to reference Brandstätter A, Parson W (2003) Mitochondrial DNA heteroplasmy or artefacts—a matter of the amplification strategy. Int J Legal Med 117:180–184PubMedCrossRef Brandstätter A, Parson W (2003) Mitochondrial DNA heteroplasmy or artefacts—a matter of the amplification strategy. Int J Legal Med 117:180–184PubMedCrossRef
16.
go back to reference Lutz-Bonengel S, Sänger T, Heinrich M, Thomas Zacher T, Schmidt U (2007) Low volume amplification and subsequent sequencing of mitochondrial DNA on a chemically structured chip. Int J Legal Med 121:68–73PubMedCrossRef Lutz-Bonengel S, Sänger T, Heinrich M, Thomas Zacher T, Schmidt U (2007) Low volume amplification and subsequent sequencing of mitochondrial DNA on a chemically structured chip. Int J Legal Med 121:68–73PubMedCrossRef
17.
go back to reference Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147PubMedCrossRef Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147PubMedCrossRef
18.
go back to reference Schmidt U, Lutz-Bonengel S, Weisser HJ et al (2006) Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit. Int J Legal Med 120:42–48PubMedCrossRef Schmidt U, Lutz-Bonengel S, Weisser HJ et al (2006) Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit. Int J Legal Med 120:42–48PubMedCrossRef
19.
go back to reference Lutz S, Weisser HJ, Heizmann J, Pollak S (1998) Location and frequency of polymorphic positions in the human mtDNA control region of individuals from Germany. Int J Legal Med 111:67–77 [Erratum in Int J Legal Med (1998) 111:286 and Int J Legal Med (1999) 112:145–150]PubMedCrossRef Lutz S, Weisser HJ, Heizmann J, Pollak S (1998) Location and frequency of polymorphic positions in the human mtDNA control region of individuals from Germany. Int J Legal Med 111:67–77 [Erratum in Int J Legal Med (1998) 111:286 and Int J Legal Med (1999) 112:145–150]PubMedCrossRef
20.
go back to reference Loken MR, Sweet RG, Herzenberg LA (1976) Cell discrimination by multiangle light scattering. J Histochem Cytochem 24:284–291PubMed Loken MR, Sweet RG, Herzenberg LA (1976) Cell discrimination by multiangle light scattering. J Histochem Cytochem 24:284–291PubMed
21.
go back to reference Zilmer NA, Godavarti M, Rodriguez JJ, Yopp TA, Lambert GM, Galbraith DW (1995) Flow cytometric analysis using digital signal processing. Cytometry 20:102–117PubMedCrossRef Zilmer NA, Godavarti M, Rodriguez JJ, Yopp TA, Lambert GM, Galbraith DW (1995) Flow cytometric analysis using digital signal processing. Cytometry 20:102–117PubMedCrossRef
22.
go back to reference Lutz S, Weisser HJ, Heizmann J, Pollak S (2000) Mitochondrial heteroplasmy among maternally related individuals. Int J Legal Med 113:155–161PubMedCrossRef Lutz S, Weisser HJ, Heizmann J, Pollak S (2000) Mitochondrial heteroplasmy among maternally related individuals. Int J Legal Med 113:155–161PubMedCrossRef
23.
go back to reference Kobayashi Y, Sharpe H, Brown N (1994) Single-cell analysis of intercellular heteroplasmy of mtDNA in Leber hereditary optic neuropathy. Am J Hum Genet 55:206–209PubMed Kobayashi Y, Sharpe H, Brown N (1994) Single-cell analysis of intercellular heteroplasmy of mtDNA in Leber hereditary optic neuropathy. Am J Hum Genet 55:206–209PubMed
24.
go back to reference Salas A, Lareu MV, Carracedo A (2001) Heteroplasmy in mtDNA and the weight of evidence in forensic mtDNA analysis: a case report. Int J Legal Med 114:186–190PubMedCrossRef Salas A, Lareu MV, Carracedo A (2001) Heteroplasmy in mtDNA and the weight of evidence in forensic mtDNA analysis: a case report. Int J Legal Med 114:186–190PubMedCrossRef
25.
go back to reference Parson W, Brandstätter A, Alonso A et al (2004) The EDNAP Mitochondrial DNA Population Database (EMPOP) collaborative exercises: organisation, results and perspectives. Forensic Sci Int 139:215–226PubMedCrossRef Parson W, Brandstätter A, Alonso A et al (2004) The EDNAP Mitochondrial DNA Population Database (EMPOP) collaborative exercises: organisation, results and perspectives. Forensic Sci Int 139:215–226PubMedCrossRef
26.
go back to reference Tully G, Barritt SM, Bender K et al (2004) Results of a collaborative study of the EDNAP group regarding mitochondrial DNA heteroplasmy and segregation in hair shafts. Forensic Sci Int 140:1–11PubMedCrossRef Tully G, Barritt SM, Bender K et al (2004) Results of a collaborative study of the EDNAP group regarding mitochondrial DNA heteroplasmy and segregation in hair shafts. Forensic Sci Int 140:1–11PubMedCrossRef
27.
go back to reference Cavelier L, Johannisson A, Gyllensten U (2000) Analysis of mtDNA copy number and composition of single mitochondrial particles using flow cytometry and PCR. Exp Cell Res 259:79–85PubMedCrossRef Cavelier L, Johannisson A, Gyllensten U (2000) Analysis of mtDNA copy number and composition of single mitochondrial particles using flow cytometry and PCR. Exp Cell Res 259:79–85PubMedCrossRef
28.
go back to reference Lomax B, Tang S, Separovic E, Phillips D, Hillard E, Thomson T, Kalousek DK (2000) Comparative genomic hybridization in combination with flow cytometry improves results of cytogenetic analysis of spontaneous abortions. Am J Hum Genet 66:1516–1521PubMedCrossRef Lomax B, Tang S, Separovic E, Phillips D, Hillard E, Thomson T, Kalousek DK (2000) Comparative genomic hybridization in combination with flow cytometry improves results of cytogenetic analysis of spontaneous abortions. Am J Hum Genet 66:1516–1521PubMedCrossRef
29.
go back to reference Shin MG, Kajigaya S, Tarnowka M, McCoy JP Jr, Levin BC, Young NS (2004) Mitochondrial DNA sequence heterogeneity in circulating normal human CD34 cells and granulocytes. Blood 103:4466–4477PubMedCrossRef Shin MG, Kajigaya S, Tarnowka M, McCoy JP Jr, Levin BC, Young NS (2004) Mitochondrial DNA sequence heterogeneity in circulating normal human CD34 cells and granulocytes. Blood 103:4466–4477PubMedCrossRef
30.
go back to reference Yao YG, Ogasawara Y, Kajigaya S et al (2007) Mitochondrial DNA sequence variation in single cells from leukemia patients. Blood 109:756–762PubMedCrossRef Yao YG, Ogasawara Y, Kajigaya S et al (2007) Mitochondrial DNA sequence variation in single cells from leukemia patients. Blood 109:756–762PubMedCrossRef
31.
go back to reference Coller HA, Bodyak ND, Khrapko K (2002) Frequent intracellular clonal expansions of somatic mtDNA mutations: significance and mechanisms. Ann N Y Acad Sci 959:434–447PubMedCrossRef Coller HA, Bodyak ND, Khrapko K (2002) Frequent intracellular clonal expansions of somatic mtDNA mutations: significance and mechanisms. Ann N Y Acad Sci 959:434–447PubMedCrossRef
32.
go back to reference Gigarel N, Ray PF, Burlet P et al (2005) Single cell quantification of the 8993T. >. G NARP mitochondrial DNA mutation by fluorescent PCR. Mol Genet Metab 84:289–292PubMedCrossRef Gigarel N, Ray PF, Burlet P et al (2005) Single cell quantification of the 8993T. >. G NARP mitochondrial DNA mutation by fluorescent PCR. Mol Genet Metab 84:289–292PubMedCrossRef
33.
go back to reference Malik S, Sudoyo H, Pramoonjago P, Sukarna T, Darwis D, Marzuki S (2002) Evidence for the de novo regeneration of the pattern of the length heteroplasmy associated with the T16189C variant in the control (D-loop) region of mitochondrial DNA. J Hum Genet 47:122–130PubMedCrossRef Malik S, Sudoyo H, Pramoonjago P, Sukarna T, Darwis D, Marzuki S (2002) Evidence for the de novo regeneration of the pattern of the length heteroplasmy associated with the T16189C variant in the control (D-loop) region of mitochondrial DNA. J Hum Genet 47:122–130PubMedCrossRef
34.
go back to reference He L, Chinnery PF, Durham SE et al (2002) Detection and quantification of mitochondrial DNA deletions in individual cells by real-time PCR. Nucleic Acids Res 30:e68PubMedCrossRef He L, Chinnery PF, Durham SE et al (2002) Detection and quantification of mitochondrial DNA deletions in individual cells by real-time PCR. Nucleic Acids Res 30:e68PubMedCrossRef
35.
go back to reference Taylor RW, Taylor GA, Durham SE, Turnbull DM (2001) The determination of complete human mitochondrial DNA sequences in single cells: implications for the study of somatic mitochondrial DNA point mutations. Nucleic Acids Res 29:e74PubMedCrossRef Taylor RW, Taylor GA, Durham SE, Turnbull DM (2001) The determination of complete human mitochondrial DNA sequences in single cells: implications for the study of somatic mitochondrial DNA point mutations. Nucleic Acids Res 29:e74PubMedCrossRef
36.
go back to reference Elson JL, Andrews RM, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (2001) Analysis of European mtDNAs for recombination. Am J Hum Genet 68:145–153PubMedCrossRef Elson JL, Andrews RM, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (2001) Analysis of European mtDNAs for recombination. Am J Hum Genet 68:145–153PubMedCrossRef
37.
go back to reference Jenuth JP, Peterson AC, Fu K, Shoubridge EA (1996) Random genetic drift in the female germline explains the rapid segregation of mammalian mitochondrial DNA. Nat Genet 14:146–151PubMedCrossRef Jenuth JP, Peterson AC, Fu K, Shoubridge EA (1996) Random genetic drift in the female germline explains the rapid segregation of mammalian mitochondrial DNA. Nat Genet 14:146–151PubMedCrossRef
38.
go back to reference Bodyak ND, Nekhaeva E, Wei JY, Khrapko K (2001) Quantification and sequencing of somatic deleted mtDNA in single cells: evidence for partially duplicated mtDNA in aged human tissues. Hum Mol Genet 10:17–24PubMedCrossRef Bodyak ND, Nekhaeva E, Wei JY, Khrapko K (2001) Quantification and sequencing of somatic deleted mtDNA in single cells: evidence for partially duplicated mtDNA in aged human tissues. Hum Mol Genet 10:17–24PubMedCrossRef
39.
go back to reference Khrapko K, Bodyak N, Thilly WG et al (1999) Cell-by-cell scanning of whole mitochondrial genomes in aged human heart reveals a significant fraction of myocytes with clonally expanded deletions. Nucleic Acids Res 27:2434–2441PubMed Khrapko K, Bodyak N, Thilly WG et al (1999) Cell-by-cell scanning of whole mitochondrial genomes in aged human heart reveals a significant fraction of myocytes with clonally expanded deletions. Nucleic Acids Res 27:2434–2441PubMed
40.
go back to reference Nekhaeva E, Bodyak ND, Kraytsberg Y et al (2002) Clonally expanded mtDNA point mutations are abundant in individual cells of human tissues. Proc Natl Acad Sci U S A 99:5521–5526PubMedCrossRef Nekhaeva E, Bodyak ND, Kraytsberg Y et al (2002) Clonally expanded mtDNA point mutations are abundant in individual cells of human tissues. Proc Natl Acad Sci U S A 99:5521–5526PubMedCrossRef
41.
go back to reference Mawrin C, Kirches E, Dietzmann K (2003) Single-cell analysis of mtDNA in amyotrophic lateral sclerosis: towards the characterization of individual neurons in neurodegenerative disorders. Pathol Res Pract 199:415–418PubMedCrossRef Mawrin C, Kirches E, Dietzmann K (2003) Single-cell analysis of mtDNA in amyotrophic lateral sclerosis: towards the characterization of individual neurons in neurodegenerative disorders. Pathol Res Pract 199:415–418PubMedCrossRef
42.
go back to reference Mawrin C, Kirches E, Krause G et al (2004) Single-cell analysis of mtDNA deletion levels in sporadic amyotrophic lateral sclerosis. Neuroreport 15:939–943PubMedCrossRef Mawrin C, Kirches E, Krause G et al (2004) Single-cell analysis of mtDNA deletion levels in sporadic amyotrophic lateral sclerosis. Neuroreport 15:939–943PubMedCrossRef
43.
go back to reference Heinzel K, Benz C, Martins VC, Haidl I, Bleul CC (2007) Bone marrow-derived hemopoietic precursors commit to the T cell lineage only after arrival in the thymic microenvironment. J Immunol 178:858–868PubMed Heinzel K, Benz C, Martins VC, Haidl I, Bleul CC (2007) Bone marrow-derived hemopoietic precursors commit to the T cell lineage only after arrival in the thymic microenvironment. J Immunol 178:858–868PubMed
44.
go back to reference Coller HA, Khrapko K, Bodyak ND, Nekhaeva E, Herrero-Jimenez P, Thilly WG (2001) High frequency of homoplasmic mitochondrial DNA mutations in human tumors can be explained without selection. Nat Genet 28:147–150PubMedCrossRef Coller HA, Khrapko K, Bodyak ND, Nekhaeva E, Herrero-Jimenez P, Thilly WG (2001) High frequency of homoplasmic mitochondrial DNA mutations in human tumors can be explained without selection. Nat Genet 28:147–150PubMedCrossRef
45.
go back to reference Marchington DR, Macaulay V, Hartshorne GM, Barlow D, Poulton J (1998) Evidence from human oocytes for a genetic bottleneck in an mtDNA disease. Am J Hum Genet 63:769–775PubMedCrossRef Marchington DR, Macaulay V, Hartshorne GM, Barlow D, Poulton J (1998) Evidence from human oocytes for a genetic bottleneck in an mtDNA disease. Am J Hum Genet 63:769–775PubMedCrossRef
46.
go back to reference Jansen RP, de Boer K (1998) The bottleneck: mitochondrial imperatives in oogenesis and ovarian follicular fate. Mol Cell Endocrinol 145:81–88PubMedCrossRef Jansen RP, de Boer K (1998) The bottleneck: mitochondrial imperatives in oogenesis and ovarian follicular fate. Mol Cell Endocrinol 145:81–88PubMedCrossRef
47.
go back to reference Krakauer DC, Mira A (1999) Mitochondria and germ-cell death. Nature 40:125–126CrossRef Krakauer DC, Mira A (1999) Mitochondria and germ-cell death. Nature 40:125–126CrossRef
49.
go back to reference Cummins JM (2001) Mitochondria: potential roles in embryogenesis and nucleocytoplasmic transfer. Hum Reprod Update 7:217–228PubMedCrossRef Cummins JM (2001) Mitochondria: potential roles in embryogenesis and nucleocytoplasmic transfer. Hum Reprod Update 7:217–228PubMedCrossRef
50.
go back to reference Cao L, Shitara H, Horii T et al (2007) The mitochondrial bottleneck occurs without reduction of mtDNA content in female mouse germ cells. Nat Genet 39:386–390PubMedCrossRef Cao L, Shitara H, Horii T et al (2007) The mitochondrial bottleneck occurs without reduction of mtDNA content in female mouse germ cells. Nat Genet 39:386–390PubMedCrossRef
51.
go back to reference Lehtinen SK, Hance N, El Meziane A et al (2000) Genotypic stability, segregation and selection in heteroplasmic human cell lines containing np 3243 mutant mtDNA. Genetics 154:363–380PubMed Lehtinen SK, Hance N, El Meziane A et al (2000) Genotypic stability, segregation and selection in heteroplasmic human cell lines containing np 3243 mutant mtDNA. Genetics 154:363–380PubMed
Metadata
Title
Single lymphocytes from two healthy individuals with mitochondrial point heteroplasmy are mainly homoplasmic
Authors
Sabine Lutz-Bonengel
Timo Sänger
Walther Parson
Helena Müller
Joachim W. Ellwart
Marie Follo
Bernhard Bonengel
Harald Niederstätter
Marielle Heinrich
Ulrike Schmidt
Publication date
01-05-2008
Publisher
Springer-Verlag
Published in
International Journal of Legal Medicine / Issue 3/2008
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-007-0190-6

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