Skip to main content
Top
Published in: European Radiology Experimental 1/2018

Open Access 01-12-2018 | Original article

Impact of fixation, coil, and number of excitations on diffusion tensor imaging of rat brains at 7.0 T

Authors: Chunhua Wang, Li Song, Ruzhi Zhang, Fabao Gao

Published in: European Radiology Experimental | Issue 1/2018

Login to get access

Abstract

Background

We sought to compare diffusion tensor imaging (DTI) parameters in vivo and ex vivo in the brain and to explore the effects of radiofrequency coil and number of excitations on ex vivo DTI parameters.

Methods

Six Sprague–Dawley rat brains were used to obtain in vivo and ex vivo DTI maps with different coils and number of excitations. DTI parameters of white matter and grey matter including diffusivities, fractional anisotropy, and other dimensionless ratios (λ2/λ1, λ3/λ1, and λ2/λ3) were obtained from reconstruction maps. Comparisons of ex vivo signal-to-noise ratio with different coils and number of excitations were conducted.

Results

Diffusivities decreased significantly after fixation in all the selected white matter and grey matter regions of interest (all at p < 0.001). The diffusivities in white matter integrity decreased more than in grey matter integrity after fixation (all at p < 0.001). The ratio of λ2/λ3 in the major brain structures changed after fixation (most at p < 0.05). There were differences in major ex vivo brain structures in DTI parameters and signal-to-noise ratio between surface coil and volume coil, and between one and four excitations (most at p < 0.05).

Conclusion

The impact of fixation, coil, and number of excitations on DTI parameters should be taken into consideration in clinical and experimental studies at 7.0 T.
Literature
1.
go back to reference Kumar M, Duda JT, Yoon SY et al (2016) Diffusion tensor imaging for assessing brain gray and white matter abnormalities in a feline model of alpha-mannosidosis. J Neuropathol Exp Neurol 75:35–43CrossRefPubMed Kumar M, Duda JT, Yoon SY et al (2016) Diffusion tensor imaging for assessing brain gray and white matter abnormalities in a feline model of alpha-mannosidosis. J Neuropathol Exp Neurol 75:35–43CrossRefPubMed
2.
go back to reference Badea A, Kane L, Anderson RJ et al (2016) The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease. Neuroimage 142:498–511CrossRefPubMedPubMedCentral Badea A, Kane L, Anderson RJ et al (2016) The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease. Neuroimage 142:498–511CrossRefPubMedPubMedCentral
5.
go back to reference Sun SW, Liang HF, Trinkaus K, Cross AH, Armstrong RC, Song SK (2006) Noninvasive detection of cuprizone induced axonal damage and demyelination in the mouse corpus callosum. Magn Reson Med 55:302–308CrossRefPubMed Sun SW, Liang HF, Trinkaus K, Cross AH, Armstrong RC, Song SK (2006) Noninvasive detection of cuprizone induced axonal damage and demyelination in the mouse corpus callosum. Magn Reson Med 55:302–308CrossRefPubMed
6.
go back to reference Budde MD, Kim JH, Liang HF et al (2007) Toward accurate diagnosis of white matter pathology using diffusion tensor imaging. Magn Reson Med 57:688–695CrossRefPubMed Budde MD, Kim JH, Liang HF et al (2007) Toward accurate diagnosis of white matter pathology using diffusion tensor imaging. Magn Reson Med 57:688–695CrossRefPubMed
7.
go back to reference Tuor UI, Morgunov M, Sule M et al (2014) Cellular correlates of longitudinal diffusion tensor imaging of axonal degeneration following hypoxic-ischemic cerebral infarction in neonatal rats. Neuroimage Clin 6:32–42CrossRefPubMedPubMedCentral Tuor UI, Morgunov M, Sule M et al (2014) Cellular correlates of longitudinal diffusion tensor imaging of axonal degeneration following hypoxic-ischemic cerebral infarction in neonatal rats. Neuroimage Clin 6:32–42CrossRefPubMedPubMedCentral
8.
go back to reference Morales-Guadarrama A, Mejía-González I, Hernández-Godínez B, Ibáñez-Contreras A, Reyes-Pantoja SA, Olayo R (2013) DTI tractography and MRI in chronic cerebral ischemia in rhesus monkey (Macaca mulatta) in vivo. Arq Neuropsiquiatr 71:134CrossRefPubMed Morales-Guadarrama A, Mejía-González I, Hernández-Godínez B, Ibáñez-Contreras A, Reyes-Pantoja SA, Olayo R (2013) DTI tractography and MRI in chronic cerebral ischemia in rhesus monkey (Macaca mulatta) in vivo. Arq Neuropsiquiatr 71:134CrossRefPubMed
9.
go back to reference Yuh EL, Cooper SR, Mukherjee P et al (2014) Diffusion tensor imaging for outcome prediction in mild traumatic brain injury: a TRACK-TBI study. J Neurotrauma 31:1457–1477CrossRefPubMedPubMedCentral Yuh EL, Cooper SR, Mukherjee P et al (2014) Diffusion tensor imaging for outcome prediction in mild traumatic brain injury: a TRACK-TBI study. J Neurotrauma 31:1457–1477CrossRefPubMedPubMedCentral
10.
go back to reference Laitinen T, Sierra A, Pitkänen A, Grohn O (2010) Diffusion tensor MRI of axonal plasticity in the rat hippocampus. Neuroimage 51:521–530CrossRefPubMed Laitinen T, Sierra A, Pitkänen A, Grohn O (2010) Diffusion tensor MRI of axonal plasticity in the rat hippocampus. Neuroimage 51:521–530CrossRefPubMed
11.
go back to reference Ruest T, Holmes WM, Barrie JA et al (2011) High-resolution diffusion tensor imaging of fixed brain in a mouse model of Pelizaeus-Merzbacher disease: comparison with quantitative measures of white matter pathology. NMR Biomed 24:1369–1379CrossRefPubMed Ruest T, Holmes WM, Barrie JA et al (2011) High-resolution diffusion tensor imaging of fixed brain in a mouse model of Pelizaeus-Merzbacher disease: comparison with quantitative measures of white matter pathology. NMR Biomed 24:1369–1379CrossRefPubMed
12.
go back to reference Chuang N, Mori S, Yamamoto A et al (2011) An MRI-based atlas and database of the developing mouse brain. Neuroimage 54:80–89CrossRefPubMed Chuang N, Mori S, Yamamoto A et al (2011) An MRI-based atlas and database of the developing mouse brain. Neuroimage 54:80–89CrossRefPubMed
13.
go back to reference Sun SW, Neil JJ, Song SK (2003) Relative indices of water diffusion anisotropy are equivalent in live and formalin-fixed mouse brains. Magn Reson Med 50:743–748CrossRefPubMed Sun SW, Neil JJ, Song SK (2003) Relative indices of water diffusion anisotropy are equivalent in live and formalin-fixed mouse brains. Magn Reson Med 50:743–748CrossRefPubMed
14.
go back to reference Wu D, Xu J, McMahon MT et al (2013) In vivo high-resolution diffusion tensor imaging of the mouse brain. Neuroimage 83:18–26CrossRefPubMed Wu D, Xu J, McMahon MT et al (2013) In vivo high-resolution diffusion tensor imaging of the mouse brain. Neuroimage 83:18–26CrossRefPubMed
15.
go back to reference Guilfoyle DN, Helpern JA, Lim KO (2003) Diffusion tensor imaging in fixed brain tissue at 7.0 T. NMR Biomed 16:77–81CrossRefPubMed Guilfoyle DN, Helpern JA, Lim KO (2003) Diffusion tensor imaging in fixed brain tissue at 7.0 T. NMR Biomed 16:77–81CrossRefPubMed
16.
go back to reference Rane S, Duong TQ (2011) Comparison of in vivo and ex vivo diffusion tensor imaging in rhesus macaques at short and long diffusion times. Open Neuroimage J 5:172–178CrossRef Rane S, Duong TQ (2011) Comparison of in vivo and ex vivo diffusion tensor imaging in rhesus macaques at short and long diffusion times. Open Neuroimage J 5:172–178CrossRef
17.
go back to reference Hui ES, Cheung MM, Chan KC, Wu EX (2010) B-value dependence of DTI quantitation and sensitivity in detecting neural tissue changes. Neuroimage 49:2366–2374CrossRefPubMed Hui ES, Cheung MM, Chan KC, Wu EX (2010) B-value dependence of DTI quantitation and sensitivity in detecting neural tissue changes. Neuroimage 49:2366–2374CrossRefPubMed
18.
go back to reference van Meer MP, Otte WM, van der Marel K et al (2012) Extent of bilateral neuronal network reorganization and functional recovery in relation to stroke severity. J Neurosci 32:4495–4507CrossRefPubMed van Meer MP, Otte WM, van der Marel K et al (2012) Extent of bilateral neuronal network reorganization and functional recovery in relation to stroke severity. J Neurosci 32:4495–4507CrossRefPubMed
19.
go back to reference Edelstein WA, Bottomley PA, Pfeifer LM (1984) A signal-to-noise calibration procedure for NMR imaging systems. Med Phys 11:180–185CrossRefPubMed Edelstein WA, Bottomley PA, Pfeifer LM (1984) A signal-to-noise calibration procedure for NMR imaging systems. Med Phys 11:180–185CrossRefPubMed
20.
go back to reference Madi S, Hasan KM, Narayana PA (2005) Diffusion tensor imaging of in vivo and excised rat spinal cord at 7 T with an icosahedral encoding scheme. Magn Reson Med 53:118–125CrossRefPubMed Madi S, Hasan KM, Narayana PA (2005) Diffusion tensor imaging of in vivo and excised rat spinal cord at 7 T with an icosahedral encoding scheme. Magn Reson Med 53:118–125CrossRefPubMed
21.
go back to reference Fox CH, Johnson FB, Whiting J, Roller PP (1985) Formaldehyde fixation. J Histochem Cytochem 33:845–853CrossRefPubMed Fox CH, Johnson FB, Whiting J, Roller PP (1985) Formaldehyde fixation. J Histochem Cytochem 33:845–853CrossRefPubMed
22.
go back to reference Helander KG (1994) Kinetic studies of formaldehyde binding in tissue. Biotech Histochem 69:177–179CrossRefPubMed Helander KG (1994) Kinetic studies of formaldehyde binding in tissue. Biotech Histochem 69:177–179CrossRefPubMed
23.
go back to reference Morgan JM, Navabi H, Schmid KW, Jasani B (1994) Possible role of tissue-bound calcium ions in citrate-mediated high-temperature antigen retrieval. J Pathol 174:301–307CrossRefPubMed Morgan JM, Navabi H, Schmid KW, Jasani B (1994) Possible role of tissue-bound calcium ions in citrate-mediated high-temperature antigen retrieval. J Pathol 174:301–307CrossRefPubMed
24.
go back to reference Werner M, Chott A, Fabiano A, Battifora H (2000) Effect of formalin tissue fixation and processing on immunohistochemistry. Am J Surg Pathol 24:1016–1019CrossRefPubMed Werner M, Chott A, Fabiano A, Battifora H (2000) Effect of formalin tissue fixation and processing on immunohistochemistry. Am J Surg Pathol 24:1016–1019CrossRefPubMed
25.
go back to reference Hillman H, Deutsch K (1978) Area changes in slices of rat brain during preparation for histology or electron microscopy. J Microsc 114:77–84CrossRefPubMed Hillman H, Deutsch K (1978) Area changes in slices of rat brain during preparation for histology or electron microscopy. J Microsc 114:77–84CrossRefPubMed
26.
go back to reference Quester R, Schröder R (1997) The shrinkage of the human brain stem during formalin fixation and embedding in paraffin. J Neurosci Methods 75:81–89CrossRefPubMed Quester R, Schröder R (1997) The shrinkage of the human brain stem during formalin fixation and embedding in paraffin. J Neurosci Methods 75:81–89CrossRefPubMed
27.
go back to reference Schulz G, Crooijmans HJ, Germann M, Scheffler K, Muller-Gerbl M, Müller B (2011) Three-dimensional strain fields in human brain resulting from formalin fixation. J Neurosci Methods 2:17–27CrossRef Schulz G, Crooijmans HJ, Germann M, Scheffler K, Muller-Gerbl M, Müller B (2011) Three-dimensional strain fields in human brain resulting from formalin fixation. J Neurosci Methods 2:17–27CrossRef
28.
go back to reference Wehrl HF, Bezrukov I, Wiehr S et al (2015) Assessment of murine brain tissue shrinkage caused by different histological fixatives using magnetic resonance and computed tomography imaging. Histol Histopathol 30:601–613PubMed Wehrl HF, Bezrukov I, Wiehr S et al (2015) Assessment of murine brain tissue shrinkage caused by different histological fixatives using magnetic resonance and computed tomography imaging. Histol Histopathol 30:601–613PubMed
29.
go back to reference Morvan D, Leroy-Willig A (1995) Simultaneous measurements of diffusion and transverse relaxation in exercising skeletal muscle. Magn Reson Imaging 13:943–948CrossRefPubMed Morvan D, Leroy-Willig A (1995) Simultaneous measurements of diffusion and transverse relaxation in exercising skeletal muscle. Magn Reson Imaging 13:943–948CrossRefPubMed
30.
go back to reference Thelwall PE, Shepherd TM, Stanisz GJ, Blackband SJ (2006) Effects of temperature and aldehyde fixation on tissue water diffusion properties, studied in an erythrocyte ghost tissue model. Magn Reson Med 56:282–289CrossRefPubMed Thelwall PE, Shepherd TM, Stanisz GJ, Blackband SJ (2006) Effects of temperature and aldehyde fixation on tissue water diffusion properties, studied in an erythrocyte ghost tissue model. Magn Reson Med 56:282–289CrossRefPubMed
31.
go back to reference Le Bihan D (1995) Diffusion and perfusion magnetic resonance imaging-applications to functional MRI. Raven Press, New York Le Bihan D (1995) Diffusion and perfusion magnetic resonance imaging-applications to functional MRI. Raven Press, New York
32.
go back to reference Hasegawa Y, Latour LL, Sotak CH, Dardzinski BJ, Fisher M (1994) Temperature dependent change of apparent diffusion coefficient of water in normal and ischemic brain of rats. J Cereb Blood Flow Metab 14:383–390CrossRefPubMed Hasegawa Y, Latour LL, Sotak CH, Dardzinski BJ, Fisher M (1994) Temperature dependent change of apparent diffusion coefficient of water in normal and ischemic brain of rats. J Cereb Blood Flow Metab 14:383–390CrossRefPubMed
33.
go back to reference Tovi M, Ericsson A (1992) Measurements of T1 and T2 over time in formalin-fixed human whole-brain specimens. Acta Radiol 33:400–404CrossRefPubMed Tovi M, Ericsson A (1992) Measurements of T1 and T2 over time in formalin-fixed human whole-brain specimens. Acta Radiol 33:400–404CrossRefPubMed
34.
go back to reference Yong-Hing CJ, Obenaus A, Stryker R, Tong K, Sarty GE (2005) Magnetic resonance imaging and mathematical modeling of progressive formalin fixation of the human brain. Magn Reson Med 54:324–332CrossRefPubMed Yong-Hing CJ, Obenaus A, Stryker R, Tong K, Sarty GE (2005) Magnetic resonance imaging and mathematical modeling of progressive formalin fixation of the human brain. Magn Reson Med 54:324–332CrossRefPubMed
35.
go back to reference Purea A, Webb AG (2006) Reversible and irreversible effects of chemical fixation on the NMR properties of single cells. Magn Reson Med 56:927–931CrossRefPubMed Purea A, Webb AG (2006) Reversible and irreversible effects of chemical fixation on the NMR properties of single cells. Magn Reson Med 56:927–931CrossRefPubMed
36.
go back to reference Raman MR, Shu Y, Lesnick TG, Jack CR, Kantarci K (2016) Regional T relaxation time constants in ex vivo human brain: longitudinal effects of formalin exposure. Magn Reson Med 77:774–778CrossRefPubMedPubMedCentral Raman MR, Shu Y, Lesnick TG, Jack CR, Kantarci K (2016) Regional T relaxation time constants in ex vivo human brain: longitudinal effects of formalin exposure. Magn Reson Med 77:774–778CrossRefPubMedPubMedCentral
37.
go back to reference McGrath DM, Foltz WD, Al-Mayah A, Niu CJ, Brock KK (2012) Quasi-static magnetic resonance elastography at 7 T to measure the effect of pathology before and after fixation on tissue biomechanical properties. Magn Reson Med 68:152–165CrossRefPubMed McGrath DM, Foltz WD, Al-Mayah A, Niu CJ, Brock KK (2012) Quasi-static magnetic resonance elastography at 7 T to measure the effect of pathology before and after fixation on tissue biomechanical properties. Magn Reson Med 68:152–165CrossRefPubMed
38.
go back to reference Rosenkrantz AB, Padhani AR, Chenevert TL et al (2015) Body diffusion kurtosis imaging: basic principles, applications, and considerations for clinical practice. J Magn Reson Imaging 42:1190–1202CrossRefPubMed Rosenkrantz AB, Padhani AR, Chenevert TL et al (2015) Body diffusion kurtosis imaging: basic principles, applications, and considerations for clinical practice. J Magn Reson Imaging 42:1190–1202CrossRefPubMed
39.
go back to reference Chung S, Fieremans E, Kucukboyaci NE et al (2018) Working memory and brain tissue microstructure: white matter tract integrity based on multi-Shell diffusion MRI. Sci Rep 8:3175CrossRefPubMedPubMedCentral Chung S, Fieremans E, Kucukboyaci NE et al (2018) Working memory and brain tissue microstructure: white matter tract integrity based on multi-Shell diffusion MRI. Sci Rep 8:3175CrossRefPubMedPubMedCentral
40.
go back to reference Ferizi U, Schneider T, Panagiotaki E et al (2014) A ranking of diffusion MRI compartment models with in vivo human brain data. Magn Reson Med 72:1785–1792CrossRefPubMed Ferizi U, Schneider T, Panagiotaki E et al (2014) A ranking of diffusion MRI compartment models with in vivo human brain data. Magn Reson Med 72:1785–1792CrossRefPubMed
41.
go back to reference Zhu X, Gur Y, Wang W, Fletcher PT (2013) Model selection and estimation of multi-compartment models in diffusion MRI with a Rician noise model. Inf Process Med Imaging 23:644–655CrossRefPubMed Zhu X, Gur Y, Wang W, Fletcher PT (2013) Model selection and estimation of multi-compartment models in diffusion MRI with a Rician noise model. Inf Process Med Imaging 23:644–655CrossRefPubMed
Metadata
Title
Impact of fixation, coil, and number of excitations on diffusion tensor imaging of rat brains at 7.0 T
Authors
Chunhua Wang
Li Song
Ruzhi Zhang
Fabao Gao
Publication date
01-12-2018
Publisher
Springer International Publishing
Published in
European Radiology Experimental / Issue 1/2018
Electronic ISSN: 2509-9280
DOI
https://doi.org/10.1186/s41747-018-0057-2

Other articles of this Issue 1/2018

European Radiology Experimental 1/2018 Go to the issue