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Published in: Gut Pathogens 1/2013

Open Access 01-12-2013 | Review

Emerging importance of holobionts in evolution and in probiotics

Authors: Yadvir Singh, Javed Ahmad, Javed Musarrat, Nasreen Z Ehtesham, Seyed E Hasnain

Published in: Gut Pathogens | Issue 1/2013

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Abstract

The existence of microbe free animals or plants in nature is virtually impossible as they and plants have a certain degree of symbiotic association with microbes. This symbiotic association leads to the formation of holobiont (host and its symbionts). This mutual coexistence is not merely at the physical or chemical level but also at the genetic level leading to the emergence of the concept of hologenome (gene pool of host and its associated symbionts). The abundance of symbionts with the associated gene diversity contributes to the fitness of the holobiont under varying environmental conditions. The hologenome theory of evolution considers the dynamic holobiont as a single unit for natural selection and provides a more accommodating view of evolution blending Darwinism and Lamarkism. Additionally, holobionts are providing scientific basis to our understanding of the growing importance of probiotics in human health and in disease management.
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Literature
1.
go back to reference Lynn M, Fester R: Symbiosis as a source of evolutionary innovation: speciation and morphogenesis. Cambridge, MA USA: MIT Press, 1991, 2- Lynn M, Fester R: Symbiosis as a source of evolutionary innovation: speciation and morphogenesis. Cambridge, MA USA: MIT Press, 1991, 2-
2.
go back to reference Rohwer F, Seguritan V, Azam F, Knowlton N: Diversity and distribution of coral-associated bacteria. Mar Ecol Prog Ser. 2002, 243: 1-10. Rohwer F, Seguritan V, Azam F, Knowlton N: Diversity and distribution of coral-associated bacteria. Mar Ecol Prog Ser. 2002, 243: 1-10.
3.
go back to reference Rosenberg E, Koren O, Reshef L, Efrony R, Zilber-Rosenberg I: The role of microorganisms in coral health, disease and evolution. Nat Rev Microbiol. 2007, 5 (5): 355-362. 10.1038/nrmicro1635.PubMed Rosenberg E, Koren O, Reshef L, Efrony R, Zilber-Rosenberg I: The role of microorganisms in coral health, disease and evolution. Nat Rev Microbiol. 2007, 5 (5): 355-362. 10.1038/nrmicro1635.PubMed
4.
go back to reference Zilber-Rosenberg I, Rosenberg E: Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev. 2008, 32 (5): 723-735. 10.1111/j.1574-6976.2008.00123.x.PubMed Zilber-Rosenberg I, Rosenberg E: Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev. 2008, 32 (5): 723-735. 10.1111/j.1574-6976.2008.00123.x.PubMed
5.
go back to reference Rosenberg E, Falkovitz L: The Vibrio shiloi/Oculina patagonica model system of coral bleaching. Annu Rev Microbiol. 2004, 58: 143-159. 10.1146/annurev.micro.58.030603.123610.PubMed Rosenberg E, Falkovitz L: The Vibrio shiloi/Oculina patagonica model system of coral bleaching. Annu Rev Microbiol. 2004, 58: 143-159. 10.1146/annurev.micro.58.030603.123610.PubMed
6.
go back to reference Hasnain SE, Friedrich B, Mettenleiter T, Dobrindt U, Hacker J: Climate change and infectious diseases–impact of global warming and climate change on infectious diseases: myth or reality?. Int J Med Microbiol. 2012, 302 (1): 1-3. 10.1016/j.ijmm.2011.09.011.PubMed Hasnain SE, Friedrich B, Mettenleiter T, Dobrindt U, Hacker J: Climate change and infectious diseases–impact of global warming and climate change on infectious diseases: myth or reality?. Int J Med Microbiol. 2012, 302 (1): 1-3. 10.1016/j.ijmm.2011.09.011.PubMed
7.
go back to reference Kinzie RA, Takayama M, Santos SR, Coffroth MA: The adaptive bleaching hypothesis: experimental tests of critical assumptions. Biol Bull. 2001, 200 (1): 51-58. 10.2307/1543084.PubMed Kinzie RA, Takayama M, Santos SR, Coffroth MA: The adaptive bleaching hypothesis: experimental tests of critical assumptions. Biol Bull. 2001, 200 (1): 51-58. 10.2307/1543084.PubMed
8.
go back to reference Reshef L, Koren O, Loya Y, Zilber-Rosenberg I, Rosenberg E: The coral probiotic hypothesis. Environ Microbiol. 2006, 8 (12): 2068-2073. 10.1111/j.1462-2920.2006.01148.x.PubMed Reshef L, Koren O, Loya Y, Zilber-Rosenberg I, Rosenberg E: The coral probiotic hypothesis. Environ Microbiol. 2006, 8 (12): 2068-2073. 10.1111/j.1462-2920.2006.01148.x.PubMed
9.
go back to reference Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T: A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010, 464 (7285): 59-65. 10.1038/nature08821.PubMedCentralPubMed Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T: A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010, 464 (7285): 59-65. 10.1038/nature08821.PubMedCentralPubMed
10.
go back to reference Hooper LV, Gordon JI: Commensal host-bacterial relationships in the gut. Science. 2001, 292 (5519): 1115-1118. 10.1126/science.1058709.PubMed Hooper LV, Gordon JI: Commensal host-bacterial relationships in the gut. Science. 2001, 292 (5519): 1115-1118. 10.1126/science.1058709.PubMed
11.
go back to reference Braun-Fahrlander C, Riedler J, Herz U, Eder W, Waser M, Grize L, Maisch S, Carr D, Gerlach F, Bufe A: Environmental exposure to endotoxin and its relation to asthma in school-age children. N Engl J Med. 2002, 347 (12): 869-877. 10.1056/NEJMoa020057.PubMed Braun-Fahrlander C, Riedler J, Herz U, Eder W, Waser M, Grize L, Maisch S, Carr D, Gerlach F, Bufe A: Environmental exposure to endotoxin and its relation to asthma in school-age children. N Engl J Med. 2002, 347 (12): 869-877. 10.1056/NEJMoa020057.PubMed
12.
13.
go back to reference Stappenbeck TS, Hooper LV, Gordon JI: Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells. Proc Natl Acad Sci U S A. 2002, 99 (24): 15451-15455. 10.1073/pnas.202604299.PubMedCentralPubMed Stappenbeck TS, Hooper LV, Gordon JI: Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells. Proc Natl Acad Sci U S A. 2002, 99 (24): 15451-15455. 10.1073/pnas.202604299.PubMedCentralPubMed
14.
go back to reference Backhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A, Semenkovich CF, Gordon JI: The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A. 2004, 101 (44): 15718-15723. 10.1073/pnas.0407076101.PubMedCentralPubMed Backhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A, Semenkovich CF, Gordon JI: The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A. 2004, 101 (44): 15718-15723. 10.1073/pnas.0407076101.PubMedCentralPubMed
15.
go back to reference Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Backhed HK, Gonzalez A, Werner JJ, Angenent LT, Knight R: Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell. 2012, 150 (3): 470-480. 10.1016/j.cell.2012.07.008.PubMedCentralPubMed Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Backhed HK, Gonzalez A, Werner JJ, Angenent LT, Knight R: Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell. 2012, 150 (3): 470-480. 10.1016/j.cell.2012.07.008.PubMedCentralPubMed
16.
go back to reference Huh SY, Rifas-Shiman SL, Zera CA, Edwards JW, Oken E, Weiss ST, Gillman MW: Delivery by caesarean section and risk of obesity in preschool age children: a prospective cohort study. Arch Dis Child. 2012, 97 (7): 610-616. 10.1136/archdischild-2011-301141.PubMedCentralPubMed Huh SY, Rifas-Shiman SL, Zera CA, Edwards JW, Oken E, Weiss ST, Gillman MW: Delivery by caesarean section and risk of obesity in preschool age children: a prospective cohort study. Arch Dis Child. 2012, 97 (7): 610-616. 10.1136/archdischild-2011-301141.PubMedCentralPubMed
17.
go back to reference Collado MC, Isolauri E, Salminen S, Sanz Y: The impact of probiotic on gut health. Curr Drug Metab. 2009, 10 (1): 68-78. 10.2174/138920009787048437.PubMed Collado MC, Isolauri E, Salminen S, Sanz Y: The impact of probiotic on gut health. Curr Drug Metab. 2009, 10 (1): 68-78. 10.2174/138920009787048437.PubMed
18.
go back to reference Hapfelmeier S, Lawson MA, Slack E, Kirundi JK, Stoel M, Heikenwalder M, Cahenzli J, Velykoredko Y, Balmer ML, Endt K: Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science. 2010, 328 (5986): 1705-1709. 10.1126/science.1188454.PubMedCentralPubMed Hapfelmeier S, Lawson MA, Slack E, Kirundi JK, Stoel M, Heikenwalder M, Cahenzli J, Velykoredko Y, Balmer ML, Endt K: Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science. 2010, 328 (5986): 1705-1709. 10.1126/science.1188454.PubMedCentralPubMed
19.
go back to reference Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW: Composition of human skin microbiota affects attractiveness to malaria mosquitoes. PLoS One. 2011, 6 (12): e28991-10.1371/journal.pone.0028991.PubMedCentralPubMed Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW: Composition of human skin microbiota affects attractiveness to malaria mosquitoes. PLoS One. 2011, 6 (12): e28991-10.1371/journal.pone.0028991.PubMedCentralPubMed
20.
go back to reference Malik HS: Retroviruses push the envelope for mammalian placentation. Proc Natl Acad Sci U S A. 2012, 109 (7): 2184-2185. 10.1073/pnas.1121365109.PubMedCentralPubMed Malik HS: Retroviruses push the envelope for mammalian placentation. Proc Natl Acad Sci U S A. 2012, 109 (7): 2184-2185. 10.1073/pnas.1121365109.PubMedCentralPubMed
21.
go back to reference Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG: Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science. 2004, 305 (5686): 997-1000. 10.1126/science.1099128.PubMed Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG: Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science. 2004, 305 (5686): 997-1000. 10.1126/science.1099128.PubMed
22.
go back to reference Ducklow HW, Boyle PJ, Maugel PW, Strong C, Mitchell R: Bacterial flora of the schistosome vector snail Biomphalaria glabrata. Appl Environ Microbiol. 1979, 38 (4): 667-672.PubMedCentralPubMed Ducklow HW, Boyle PJ, Maugel PW, Strong C, Mitchell R: Bacterial flora of the schistosome vector snail Biomphalaria glabrata. Appl Environ Microbiol. 1979, 38 (4): 667-672.PubMedCentralPubMed
23.
go back to reference Ritchie KB: Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser. 2006, 322: 1-14. Ritchie KB: Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser. 2006, 322: 1-14.
24.
go back to reference Nissimov J, Rosenberg E, Munn CB: Antimicrobial properties of resident coral mucus bacteria of Oculina patagonica. FEMS Microbiol Lett. 2009, 292 (2): 210-215. 10.1111/j.1574-6968.2009.01490.x.PubMed Nissimov J, Rosenberg E, Munn CB: Antimicrobial properties of resident coral mucus bacteria of Oculina patagonica. FEMS Microbiol Lett. 2009, 292 (2): 210-215. 10.1111/j.1574-6968.2009.01490.x.PubMed
25.
go back to reference Shnit-Orland M, Kushmaro A: Coral mucus-associated bacteria: a possible first line of defense. FEMS Microbiol Ecol. 2009, 67 (3): 371-380. 10.1111/j.1574-6941.2008.00644.x.PubMed Shnit-Orland M, Kushmaro A: Coral mucus-associated bacteria: a possible first line of defense. FEMS Microbiol Ecol. 2009, 67 (3): 371-380. 10.1111/j.1574-6941.2008.00644.x.PubMed
26.
go back to reference Stow A, Beattie A: Chemical and genetic defenses against disease in insect societies. Brain Behav Immun. 2008, 22 (7): 1009-1013. 10.1016/j.bbi.2008.03.008.PubMed Stow A, Beattie A: Chemical and genetic defenses against disease in insect societies. Brain Behav Immun. 2008, 22 (7): 1009-1013. 10.1016/j.bbi.2008.03.008.PubMed
27.
go back to reference Sharon G, Segal D, Ringo JM, Hefetz A, Zilber-Rosenberg I, Rosenberg E: Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2010, 107 (46): 20051-20056. 10.1073/pnas.1009906107.PubMedCentralPubMed Sharon G, Segal D, Ringo JM, Hefetz A, Zilber-Rosenberg I, Rosenberg E: Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2010, 107 (46): 20051-20056. 10.1073/pnas.1009906107.PubMedCentralPubMed
28.
go back to reference Coyne JA: Genetics and speciation. Nature. 1992, 355 (6360): 511-515. 10.1038/355511a0.PubMed Coyne JA: Genetics and speciation. Nature. 1992, 355 (6360): 511-515. 10.1038/355511a0.PubMed
29.
go back to reference Schluter D: Evidence for ecological speciation and its alternative. Science. 2009, 323 (5915): 737-741. 10.1126/science.1160006.PubMed Schluter D: Evidence for ecological speciation and its alternative. Science. 2009, 323 (5915): 737-741. 10.1126/science.1160006.PubMed
30.
go back to reference Acuna R, Padilla BE, Florez-Ramos CP, Rubio JD, Herrera JC, Benavides P, Lee SJ, Yeats TH, Egan AN, Doyle JJ: Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc Natl Acad Sci USA. 2012, 109 (11): 4197-4202.PubMedCentralPubMed Acuna R, Padilla BE, Florez-Ramos CP, Rubio JD, Herrera JC, Benavides P, Lee SJ, Yeats TH, Egan AN, Doyle JJ: Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc Natl Acad Sci USA. 2012, 109 (11): 4197-4202.PubMedCentralPubMed
31.
go back to reference Gehrer L, Vorburger C: Parasitoids as vectors of facultative bacterial endosymbionts in aphids. Biol Lett. 2012, 8 (4): 613-615. 10.1098/rsbl.2012.0144.PubMedCentralPubMed Gehrer L, Vorburger C: Parasitoids as vectors of facultative bacterial endosymbionts in aphids. Biol Lett. 2012, 8 (4): 613-615. 10.1098/rsbl.2012.0144.PubMedCentralPubMed
32.
go back to reference Ruby EG: Lessons from a cooperative, bacterial-animal association: the Vibrio fischeri-Euprymna scolopes light organ symbiosis. Annu Rev Microbiol. 1996, 50: 591-624. 10.1146/annurev.micro.50.1.591.PubMed Ruby EG: Lessons from a cooperative, bacterial-animal association: the Vibrio fischeri-Euprymna scolopes light organ symbiosis. Annu Rev Microbiol. 1996, 50: 591-624. 10.1146/annurev.micro.50.1.591.PubMed
33.
go back to reference Nyholm SV, McFall-Ngai MJ: The winnowing: establishing the squid-vibrio symbiosis. Nat Rev Microbiol. 2004, 2 (8): 632-642. 10.1038/nrmicro957.PubMed Nyholm SV, McFall-Ngai MJ: The winnowing: establishing the squid-vibrio symbiosis. Nat Rev Microbiol. 2004, 2 (8): 632-642. 10.1038/nrmicro957.PubMed
34.
go back to reference De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A. 2010, 107 (33): 14691-14696. 10.1073/pnas.1005963107.PubMedCentralPubMed De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A. 2010, 107 (33): 14691-14696. 10.1073/pnas.1005963107.PubMedCentralPubMed
35.
go back to reference Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI: The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009, 1 (6): 6ra14-10.1126/scitranslmed.3000322.PubMedCentralPubMed Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI: The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009, 1 (6): 6ra14-10.1126/scitranslmed.3000322.PubMedCentralPubMed
36.
go back to reference Sullivan A, Nord CE: Probiotics and gastrointestinal diseases. J Intern Med. 2005, 257 (1): 78-92. 10.1111/j.1365-2796.2004.01410.x.PubMed Sullivan A, Nord CE: Probiotics and gastrointestinal diseases. J Intern Med. 2005, 257 (1): 78-92. 10.1111/j.1365-2796.2004.01410.x.PubMed
37.
go back to reference Caspi-Fluger A, Inbar M, Mozes-Daube N, Katzir N, Portnoy V, Belausov E, Hunter MS, Zchori-Fein E: Horizontal transmission of the insect symbiont Rickettsia is plant-mediated. Proc Biol Sci. 2012, 279 (1734): 1791-1796. 10.1098/rspb.2011.2095.PubMedCentralPubMed Caspi-Fluger A, Inbar M, Mozes-Daube N, Katzir N, Portnoy V, Belausov E, Hunter MS, Zchori-Fein E: Horizontal transmission of the insect symbiont Rickettsia is plant-mediated. Proc Biol Sci. 2012, 279 (1734): 1791-1796. 10.1098/rspb.2011.2095.PubMedCentralPubMed
38.
go back to reference Hehemann JH, Correc G, Barbeyron T, Helbert W, Czjzek M, Michel G: Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature. 2010, 464 (7290): 908-912. 10.1038/nature08937.PubMed Hehemann JH, Correc G, Barbeyron T, Helbert W, Czjzek M, Michel G: Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature. 2010, 464 (7290): 908-912. 10.1038/nature08937.PubMed
39.
go back to reference Hacker J, Kaper JB: Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol. 2000, 54: 641-679. 10.1146/annurev.micro.54.1.641.PubMed Hacker J, Kaper JB: Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol. 2000, 54: 641-679. 10.1146/annurev.micro.54.1.641.PubMed
40.
go back to reference Finan TM: Evolving insights: symbiosis islands and horizontal gene transfer. J Bacteriol. 2002, 184 (11): 2855-2856. 10.1128/JB.184.11.2855-2856.2002.PubMedCentralPubMed Finan TM: Evolving insights: symbiosis islands and horizontal gene transfer. J Bacteriol. 2002, 184 (11): 2855-2856. 10.1128/JB.184.11.2855-2856.2002.PubMedCentralPubMed
41.
go back to reference Hacker J, Dobrindt U, Steinert M, Merkert H, Hentschel U: Co-evolution of bacteria and their hosts: a marriage made in heaven or hell?. Adv Mol Cell Microbiol. Edited by: McFall-Ngai M, Henderson B, Ruby E. 2005, New York: Cambridge University Press, 57-72. Hacker J, Dobrindt U, Steinert M, Merkert H, Hentschel U: Co-evolution of bacteria and their hosts: a marriage made in heaven or hell?. Adv Mol Cell Microbiol. Edited by: McFall-Ngai M, Henderson B, Ruby E. 2005, New York: Cambridge University Press, 57-72.
42.
go back to reference Ahmed N, Dobrindt U, Hacker J, Hasnain SE: Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nat Rev Microbiol. 2008, 6 (5): 387-394. 10.1038/nrmicro1889.PubMed Ahmed N, Dobrindt U, Hacker J, Hasnain SE: Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nat Rev Microbiol. 2008, 6 (5): 387-394. 10.1038/nrmicro1889.PubMed
43.
go back to reference McFall-Ngai MJ: Unseen forces: the influence of bacteria on animal development. Dev Biol. 2002, 242 (1): 1-14. 10.1006/dbio.2001.0522.PubMed McFall-Ngai MJ: Unseen forces: the influence of bacteria on animal development. Dev Biol. 2002, 242 (1): 1-14. 10.1006/dbio.2001.0522.PubMed
44.
go back to reference Baumann P, Baumann L, Lai CY, Rouhbakhsh D, Moran NA, Clark MA: Genetics, physiology, and evolutionary relationships of the genus Buchnera: intracellular symbionts of aphids. Annu Rev Microbiol. 1995, 49: 55-94. 10.1146/annurev.mi.49.100195.000415.PubMed Baumann P, Baumann L, Lai CY, Rouhbakhsh D, Moran NA, Clark MA: Genetics, physiology, and evolutionary relationships of the genus Buchnera: intracellular symbionts of aphids. Annu Rev Microbiol. 1995, 49: 55-94. 10.1146/annurev.mi.49.100195.000415.PubMed
45.
go back to reference Zoetendal EG, Ben-Amor K, Akkermans AD, Abee T, de Vos WM: DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract. Syst Appl Microbiol. 2001, 24 (3): 405-410. 10.1078/0723-2020-00060.PubMed Zoetendal EG, Ben-Amor K, Akkermans AD, Abee T, de Vos WM: DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract. Syst Appl Microbiol. 2001, 24 (3): 405-410. 10.1078/0723-2020-00060.PubMed
46.
go back to reference Ley RE, Peterson DA, Gordon JI: Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006, 124 (4): 837-848. 10.1016/j.cell.2006.02.017.PubMed Ley RE, Peterson DA, Gordon JI: Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006, 124 (4): 837-848. 10.1016/j.cell.2006.02.017.PubMed
48.
go back to reference Kaur IP, Chopra K, Saini A: Probiotics: potential pharmaceutical applications. Eur J Pharm Sci. 2002, 15 (1): 1-9. 10.1016/S0928-0987(01)00209-3.PubMed Kaur IP, Chopra K, Saini A: Probiotics: potential pharmaceutical applications. Eur J Pharm Sci. 2002, 15 (1): 1-9. 10.1016/S0928-0987(01)00209-3.PubMed
49.
go back to reference Sleator RD: Probiotic therapy - recruiting old friends to fight new foes. Gut Pathog. 2010, 2 (1): 5-10.1186/1757-4749-2-5.PubMedCentralPubMed Sleator RD: Probiotic therapy - recruiting old friends to fight new foes. Gut Pathog. 2010, 2 (1): 5-10.1186/1757-4749-2-5.PubMedCentralPubMed
50.
go back to reference Forsythe P, Bienenstock J: Immunomodulation by commensal and probiotic bacteria. Immunol Invest. 2010, 39 (4–5): 429-448.PubMed Forsythe P, Bienenstock J: Immunomodulation by commensal and probiotic bacteria. Immunol Invest. 2010, 39 (4–5): 429-448.PubMed
51.
go back to reference Bercik P, Collins SM, Verdu EF: Microbes and the gut-brain axis. Neurogastroenterol Motil. 2012, 24 (5): 405-413. 10.1111/j.1365-2982.2012.01906.x.PubMed Bercik P, Collins SM, Verdu EF: Microbes and the gut-brain axis. Neurogastroenterol Motil. 2012, 24 (5): 405-413. 10.1111/j.1365-2982.2012.01906.x.PubMed
52.
go back to reference Philpott H, Gibson P, Thien F: Irritable bowel syndrome - An inflammatory disease involving mast cells. Asia Pac Allergy. 2011, 1 (1): 36-42. 10.5415/apallergy.2011.1.1.36.PubMedCentralPubMed Philpott H, Gibson P, Thien F: Irritable bowel syndrome - An inflammatory disease involving mast cells. Asia Pac Allergy. 2011, 1 (1): 36-42. 10.5415/apallergy.2011.1.1.36.PubMedCentralPubMed
53.
go back to reference Forsythe P: Probiotics and lung diseases. Chest. 2011, 139 (4): 901-908. 10.1378/chest.10-1861.PubMed Forsythe P: Probiotics and lung diseases. Chest. 2011, 139 (4): 901-908. 10.1378/chest.10-1861.PubMed
54.
go back to reference Saarialho-Kere U: The gut-skin axis. J Pediatr Gastroenterol Nutr. 2004, 39 (Suppl 3): S734-S735.PubMed Saarialho-Kere U: The gut-skin axis. J Pediatr Gastroenterol Nutr. 2004, 39 (Suppl 3): S734-S735.PubMed
55.
56.
go back to reference Gigante G, Tortora A, Ianiro G, Ojetti V, Purchiaroni F, Campanale M, Cesario V, Scarpellini E, Gasbarrini A: Role of gut microbiota in food tolerance and allergies. Dig Dis. 2011, 29 (6): 540-549. 10.1159/000332977.PubMed Gigante G, Tortora A, Ianiro G, Ojetti V, Purchiaroni F, Campanale M, Cesario V, Scarpellini E, Gasbarrini A: Role of gut microbiota in food tolerance and allergies. Dig Dis. 2011, 29 (6): 540-549. 10.1159/000332977.PubMed
57.
go back to reference Huang Y, Zheng Y: The probiotic Lactobacillus acidophilus reduces cholesterol absorption through the down-regulation of Niemann-Pick C1-like 1 in Caco-2 cells. Br J Nutr. 2010, 103 (4): 473-478. 10.1017/S0007114509991991.PubMed Huang Y, Zheng Y: The probiotic Lactobacillus acidophilus reduces cholesterol absorption through the down-regulation of Niemann-Pick C1-like 1 in Caco-2 cells. Br J Nutr. 2010, 103 (4): 473-478. 10.1017/S0007114509991991.PubMed
58.
go back to reference Lionetti E, Indrio F, Pavone L, Borrelli G, Cavallo L, Francavilla R: Role of probiotics in pediatric patients with Helicobacter pylori infection: a comprehensive review of the literature. Helicobacter. 2010, 15 (2): 79-87. 10.1111/j.1523-5378.2009.00743.x.PubMed Lionetti E, Indrio F, Pavone L, Borrelli G, Cavallo L, Francavilla R: Role of probiotics in pediatric patients with Helicobacter pylori infection: a comprehensive review of the literature. Helicobacter. 2010, 15 (2): 79-87. 10.1111/j.1523-5378.2009.00743.x.PubMed
59.
go back to reference Travers MA, Florent I, Kohl L, Grellier P: Probiotics for the control of parasites: an overview. J Parasitol Res. 2011, 2011: 610769-PubMedCentralPubMed Travers MA, Florent I, Kohl L, Grellier P: Probiotics for the control of parasites: an overview. J Parasitol Res. 2011, 2011: 610769-PubMedCentralPubMed
60.
go back to reference Ohara T, Yoshino K, Kitajima M: Possibility of preventing colorectal carcinogenesis with probiotics. Hepatogastroenterology. 2010, 57 (104): 1411-1415.PubMed Ohara T, Yoshino K, Kitajima M: Possibility of preventing colorectal carcinogenesis with probiotics. Hepatogastroenterology. 2010, 57 (104): 1411-1415.PubMed
61.
go back to reference Bonifait L, Chandad F, Grenier D: Probiotics for oral health: myth or reality?. J Can Dent Assoc. 2009, 75 (8): 585-590.PubMed Bonifait L, Chandad F, Grenier D: Probiotics for oral health: myth or reality?. J Can Dent Assoc. 2009, 75 (8): 585-590.PubMed
62.
go back to reference Bjorksten B: Treating childhood allergy with gut microbes: facts or fiction?. Br J Dermatol. 2012, 166 (1): 1-2. 10.1111/j.1365-2133.2011.10753.x.PubMed Bjorksten B: Treating childhood allergy with gut microbes: facts or fiction?. Br J Dermatol. 2012, 166 (1): 1-2. 10.1111/j.1365-2133.2011.10753.x.PubMed
63.
go back to reference MacPhee RA, Hummelen R, Bisanz JE, Miller WL, Reid G: Probiotic strategies for the treatment and prevention of bacterial vaginosis. Expert Opin Pharmacother. 2010, 11 (18): 2985-2995. 10.1517/14656566.2010.512004.PubMed MacPhee RA, Hummelen R, Bisanz JE, Miller WL, Reid G: Probiotic strategies for the treatment and prevention of bacterial vaginosis. Expert Opin Pharmacother. 2010, 11 (18): 2985-2995. 10.1517/14656566.2010.512004.PubMed
64.
go back to reference Cryan JF, O’Mahony SM: The microbiome-gut-brain axis: from bowel to behavior. Neurogastroenterol Motil. 2011, 23 (3): 187-192. 10.1111/j.1365-2982.2010.01664.x.PubMed Cryan JF, O’Mahony SM: The microbiome-gut-brain axis: from bowel to behavior. Neurogastroenterol Motil. 2011, 23 (3): 187-192. 10.1111/j.1365-2982.2010.01664.x.PubMed
65.
go back to reference Messaoudi M, Lalonde R, Violle N, Javelot H, Desor D, Nejdi A, Bisson JF, Rougeot C, Pichelin M, Cazaubiel M: Assessment of psychotropic-like properties of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects. Br J Nutr. 2011, 105 (5): 755-764. 10.1017/S0007114510004319.PubMed Messaoudi M, Lalonde R, Violle N, Javelot H, Desor D, Nejdi A, Bisson JF, Rougeot C, Pichelin M, Cazaubiel M: Assessment of psychotropic-like properties of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects. Br J Nutr. 2011, 105 (5): 755-764. 10.1017/S0007114510004319.PubMed
66.
go back to reference Sleator RD, Hill C: Patho-biotechnology: using bad bugs to do good things. Curr Opin Biotechnol. 2006, 17 (2): 211-216. 10.1016/j.copbio.2006.01.006.PubMed Sleator RD, Hill C: Patho-biotechnology: using bad bugs to do good things. Curr Opin Biotechnol. 2006, 17 (2): 211-216. 10.1016/j.copbio.2006.01.006.PubMed
67.
go back to reference Sheehan VM, Sleator RD, Fitzgerald GF, Hill C: Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118. Appl Environ Microbiol. 2006, 72 (3): 2170-2177. 10.1128/AEM.72.3.2170-2177.2006.PubMedCentralPubMed Sheehan VM, Sleator RD, Fitzgerald GF, Hill C: Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118. Appl Environ Microbiol. 2006, 72 (3): 2170-2177. 10.1128/AEM.72.3.2170-2177.2006.PubMedCentralPubMed
68.
go back to reference Hillman JD, Mo J, McDonell E, Cvitkovitch D, Hillman CH: Modification of an effector strain for replacement therapy of dental caries to enable clinical safety trials. J Appl Microbiol. 2007, 102 (5): 1209-1219. 10.1111/j.1365-2672.2007.03316.x.PubMed Hillman JD, Mo J, McDonell E, Cvitkovitch D, Hillman CH: Modification of an effector strain for replacement therapy of dental caries to enable clinical safety trials. J Appl Microbiol. 2007, 102 (5): 1209-1219. 10.1111/j.1365-2672.2007.03316.x.PubMed
69.
go back to reference Steidler L: Genetically engineered probiotics. Best Pract Res Clin Gastroenterol. 2003, 17 (5): 861-876. 10.1016/S1521-6918(03)00072-6.PubMed Steidler L: Genetically engineered probiotics. Best Pract Res Clin Gastroenterol. 2003, 17 (5): 861-876. 10.1016/S1521-6918(03)00072-6.PubMed
70.
go back to reference Wells JM, Mercenier A: Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria. Nat Rev Microbiol. 2008, 6 (5): 349-362. 10.1038/nrmicro1840.PubMed Wells JM, Mercenier A: Mucosal delivery of therapeutic and prophylactic molecules using lactic acid bacteria. Nat Rev Microbiol. 2008, 6 (5): 349-362. 10.1038/nrmicro1840.PubMed
71.
go back to reference Wang S, Ghosh AK, Bongio N, Stebbings KA, Lampe DJ, Jacobs-Lorena M: Fighting malaria with engineered symbiotic bacteria from vector mosquitoes. Proc Natl Acad Sci U S A. 2012, 109 (31): 12734-12739. 10.1073/pnas.1204158109.PubMedCentralPubMed Wang S, Ghosh AK, Bongio N, Stebbings KA, Lampe DJ, Jacobs-Lorena M: Fighting malaria with engineered symbiotic bacteria from vector mosquitoes. Proc Natl Acad Sci U S A. 2012, 109 (31): 12734-12739. 10.1073/pnas.1204158109.PubMedCentralPubMed
72.
go back to reference Rosenberg E, Sharon G, Zilber-Rosenberg I: The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. Environ Microbiol. 2009, 11 (12): 2959-2962. 10.1111/j.1462-2920.2009.01995.x.PubMed Rosenberg E, Sharon G, Zilber-Rosenberg I: The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. Environ Microbiol. 2009, 11 (12): 2959-2962. 10.1111/j.1462-2920.2009.01995.x.PubMed
Metadata
Title
Emerging importance of holobionts in evolution and in probiotics
Authors
Yadvir Singh
Javed Ahmad
Javed Musarrat
Nasreen Z Ehtesham
Seyed E Hasnain
Publication date
01-12-2013
Publisher
BioMed Central
Published in
Gut Pathogens / Issue 1/2013
Electronic ISSN: 1757-4749
DOI
https://doi.org/10.1186/1757-4749-5-12

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