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Published in: Archives of Virology 9/2008

01-09-2008 | Brief Report

Completion of the sequence of rice gall dwarf virus from Guangxi, China

Authors: Heng-Mu Zhang, Xing Xin, Jian Yang, Jian-Ping Chen, Jian-Ming Wang, M. J. Adams

Published in: Archives of Virology | Issue 9/2008

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Abstract

The complete nucleotide sequences of segments S2, S3, S5, and S8–S11 of a Rice gall dwarf virus isolate from Guangxi Province, China, (RGDV-GX) were determined, completing the sequence of this isolate. The total genome (25,567nt) was similar in organization to a recently reported Thailand isolate (RGDV-T). A previously unreported second segment-specific repeat of 7 or 8nt was detected close to the 3′-end of segments S3, S5, and S8. The 3′-UTR of RGDV-GX S4 was 139nt shorter than that of RGDV-T; the insertion in RGDV-T contains a 34-nt inverted repeat, with the 3′-terminus probably abolishing the expected stem loop structure.
Literature
1.
go back to reference Anzola JV, Xu Z, Asamizu T, Nuss DL (1987) Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumour virus genome and defective interfering RNAs. Proc Natl Acad Sci USA 84:8301–8305PubMedCrossRef Anzola JV, Xu Z, Asamizu T, Nuss DL (1987) Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumour virus genome and defective interfering RNAs. Proc Natl Acad Sci USA 84:8301–8305PubMedCrossRef
2.
go back to reference Dulieu P, Bar-Joseph M (1989) Rapid isolation of double stranded RNA segments from disulphide crosslinked polyacrylamide gels. J Virol Methods 24:77–84PubMedCrossRef Dulieu P, Bar-Joseph M (1989) Rapid isolation of double stranded RNA segments from disulphide crosslinked polyacrylamide gels. J Virol Methods 24:77–84PubMedCrossRef
3.
go back to reference Ichimi K, Kikuchi A, Moriyasu Y, Zhong B, Hagiwara K, Kamiunten H, Omura T (2002) Sequence analysis and GTP-binding ability of the minor core protein P5 of Rice gall dwarf virus. Jpn Agricul Res Q 36:83–87 Ichimi K, Kikuchi A, Moriyasu Y, Zhong B, Hagiwara K, Kamiunten H, Omura T (2002) Sequence analysis and GTP-binding ability of the minor core protein P5 of Rice gall dwarf virus. Jpn Agricul Res Q 36:83–87
4.
go back to reference Li Y, Xu H, Cheng MF, Zheng HH, Mao ZJ, Xiao J, Zhang FJ, Ming XT, Qu L, Liu YF, Li W, Zhao XL, Pan NS, Chen ZL (1998) Functional genomic analysis of rice dwarf virus. Acta Sci Nat Univ Pek 34:332–341 Li Y, Xu H, Cheng MF, Zheng HH, Mao ZJ, Xiao J, Zhang FJ, Ming XT, Qu L, Liu YF, Li W, Zhao XL, Pan NS, Chen ZL (1998) Functional genomic analysis of rice dwarf virus. Acta Sci Nat Univ Pek 34:332–341
5.
go back to reference Li Y, Bao YM, Wei CH, Kang ZS, Zhong YW, Mao P, Wu G, Chen ZL, Schiemann J, Nelson RS (2004) Rice dwarf phytoreovirus segment S6-encoded nonstructural protein has a cell-to-cell movement function. J Virol 78:5382–5389PubMedCrossRef Li Y, Bao YM, Wei CH, Kang ZS, Zhong YW, Mao P, Wu G, Chen ZL, Schiemann J, Nelson RS (2004) Rice dwarf phytoreovirus segment S6-encoded nonstructural protein has a cell-to-cell movement function. J Virol 78:5382–5389PubMedCrossRef
6.
go back to reference Moriyasu Y, Maruyama-Funatsuki W, Kikuchi A, Ichimi K, Zhong B, Yan J, Zhu Y, Suga H, Watanabe Y, Ichiki-Uehara T, Shimizu T, Hagiwara K, Kamiunten H, Akutsu K, Omura T (2007) Molecular analysis of the genome segments S1, S4, S6, S7 and S12 of a Rice gall dwarf virus isolate from Thailand; completion of the genomic sequence. Arch Virol 152:1315–1322PubMedCrossRef Moriyasu Y, Maruyama-Funatsuki W, Kikuchi A, Ichimi K, Zhong B, Yan J, Zhu Y, Suga H, Watanabe Y, Ichiki-Uehara T, Shimizu T, Hagiwara K, Kamiunten H, Akutsu K, Omura T (2007) Molecular analysis of the genome segments S1, S4, S6, S7 and S12 of a Rice gall dwarf virus isolate from Thailand; completion of the genomic sequence. Arch Virol 152:1315–1322PubMedCrossRef
7.
go back to reference Murao K, Uyeda I, Ando Y, Kimura I, Cabauatan PQ, Koganezawa H (1996) Genomic rearrangement in genome segment 12 of rice dwarf phytoreovirus. Virology 216:238–240PubMedCrossRef Murao K, Uyeda I, Ando Y, Kimura I, Cabauatan PQ, Koganezawa H (1996) Genomic rearrangement in genome segment 12 of rice dwarf phytoreovirus. Virology 216:238–240PubMedCrossRef
8.
go back to reference Omura T (1995) Genomes and primary protein structures of phytoreoviruses. Semin Virol 6:97–102CrossRef Omura T (1995) Genomes and primary protein structures of phytoreoviruses. Semin Virol 6:97–102CrossRef
9.
go back to reference Omura T, Yan J (1999) Role of outer capsid proteins in transmission of Phytoreovirus by insect vectors. Adv Virus Res 54:15–43PubMedCrossRef Omura T, Yan J (1999) Role of outer capsid proteins in transmission of Phytoreovirus by insect vectors. Adv Virus Res 54:15–43PubMedCrossRef
10.
go back to reference Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York
11.
go back to reference Suzuki N, Sugawara M, Kusano T (1992) Rice dwarf phytoreovirus segment S12 transcript is tricistronic in vitro. Virology 191:992–995PubMedCrossRef Suzuki N, Sugawara M, Kusano T (1992) Rice dwarf phytoreovirus segment S12 transcript is tricistronic in vitro. Virology 191:992–995PubMedCrossRef
12.
go back to reference Suzuki N, Sugawara M, Nuss DL, Matsuura Y (1996) Polycistronic (tri- or bicistronic) phytoreoviral segments translatable in both plant and insect cells. J Virol 70:8155–8159PubMed Suzuki N, Sugawara M, Nuss DL, Matsuura Y (1996) Polycistronic (tri- or bicistronic) phytoreoviral segments translatable in both plant and insect cells. J Virol 70:8155–8159PubMed
13.
go back to reference Uyeda I, Bong-Choon L, Ando Y (1998) Reovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81. Plant virology protocols: from virus isolation to transgenic resistance. Humana Press, Totowa, pp 65–75 Uyeda I, Bong-Choon L, Ando Y (1998) Reovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81. Plant virology protocols: from virus isolation to transgenic resistance. Humana Press, Totowa, pp 65–75
14.
go back to reference Wei T, Kikuchi A, Moriyasu Y, Suzuki N, Shimizu T, Hagiwara K, Chen H, Takahashi M, Ichiki-Uehara T, Omura T (2006) The spread of Rice dwarf virus among cells of its insect vector exploits virus-induced tubular structures. J Virol 80:8593–8602PubMedCrossRef Wei T, Kikuchi A, Moriyasu Y, Suzuki N, Shimizu T, Hagiwara K, Chen H, Takahashi M, Ichiki-Uehara T, Omura T (2006) The spread of Rice dwarf virus among cells of its insect vector exploits virus-induced tubular structures. J Virol 80:8593–8602PubMedCrossRef
15.
go back to reference Wei T, Shimizu T, Hagiwara K, Kikuchi A, Moriyasu Y, Suzuki N, Chen H, Omura T (2006) Pns12 protein of Rice dwarf virus is essential for formation of viroplasms and nucleation of viral-assembly complexes. J Gen Virol 87:429–438PubMedCrossRef Wei T, Shimizu T, Hagiwara K, Kikuchi A, Moriyasu Y, Suzuki N, Chen H, Omura T (2006) Pns12 protein of Rice dwarf virus is essential for formation of viroplasms and nucleation of viral-assembly complexes. J Gen Virol 87:429–438PubMedCrossRef
16.
go back to reference Zhang HM, Chen JP, Adams MJ (2001) Molecular characterization of segments 1 to 6 of rice black-streaked dwarf virus from China provides the complete genome. Arch Virol 146:2331–2339PubMedCrossRef Zhang HM, Chen JP, Adams MJ (2001) Molecular characterization of segments 1 to 6 of rice black-streaked dwarf virus from China provides the complete genome. Arch Virol 146:2331–2339PubMedCrossRef
17.
go back to reference Zhang HM, Chen JP, Lei JL, Adams MJ (2001) Sequence analysis shows that a dwarfing disease on rice, maize and wheat in China is caused by Rice black-streaked dwarf virus (RBSDV). Eur J Plant Pathol 107:563–567CrossRef Zhang HM, Chen JP, Lei JL, Adams MJ (2001) Sequence analysis shows that a dwarfing disease on rice, maize and wheat in China is caused by Rice black-streaked dwarf virus (RBSDV). Eur J Plant Pathol 107:563–567CrossRef
18.
go back to reference Zhang HM, Yang J, Xin X, Chen JP, Adams MJ (2007) Molecular characterization of the largest and smallest genome segments, S1 and S12, of Rice gall dwarf virus. Virus Genes 35:815–823PubMedCrossRef Zhang HM, Yang J, Xin X, Chen JP, Adams MJ (2007) Molecular characterization of the largest and smallest genome segments, S1 and S12, of Rice gall dwarf virus. Virus Genes 35:815–823PubMedCrossRef
19.
go back to reference Zhang HM, Yang J, Xin X, Chen JP, Adams MJ (2007) Molecular characterization of the genome segments S4, S6 and S7 of rice gall dwarf virus. Arch Virol 52:1593–1602CrossRef Zhang HM, Yang J, Xin X, Chen JP, Adams MJ (2007) Molecular characterization of the genome segments S4, S6 and S7 of rice gall dwarf virus. Arch Virol 52:1593–1602CrossRef
20.
go back to reference Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415PubMedCrossRef Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415PubMedCrossRef
Metadata
Title
Completion of the sequence of rice gall dwarf virus from Guangxi, China
Authors
Heng-Mu Zhang
Xing Xin
Jian Yang
Jian-Ping Chen
Jian-Ming Wang
M. J. Adams
Publication date
01-09-2008
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 9/2008
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-008-0167-x

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