Skip to main content
Top
Published in: Archives of Virology 8/2016

01-08-2016 | Annotated Sequence Record

Complete genome sequence of a new bipartite begomovirus infecting fluted pumpkin (Telfairia occidentalis) plants in Cameroon

Authors: Walter N. Leke, Behnam Khatabi, Vincent N. Fondong, Judith K. Brown

Published in: Archives of Virology | Issue 8/2016

Login to get access

Abstract

The complete genome sequence was determined and characterized for a previously unreported bipartite begomovirus from fluted pumpkin (Telfairia occidentalis, family Cucurbitaceae) plants displaying mosaic symptoms in Cameroon. The DNA-A and DNA-B components were ~2.7 kb and ~2.6 kb in size, and the arrangement of viral coding regions on the genomic components was like those characteristic of other known bipartite begomoviruses originating in the Old World. While the DNA-A component was more closely related to that of chayote yellow mosaic virus (ChaYMV), at 78 %, the DNA-B component was more closely related to that of soybean chlorotic blotch virus (SbCBV), at 64 %. This newly discovered bipartite Old World virus is herein named telfairia mosaic virus (TelMV).
Literature
1.
go back to reference Akoroda MO (1990) Ethnobotany of Telfairia occidentalis (Cucurbitaceae) among Igbos of Nigeria. Econ Bot 44:29–39CrossRef Akoroda MO (1990) Ethnobotany of Telfairia occidentalis (Cucurbitaceae) among Igbos of Nigeria. Econ Bot 44:29–39CrossRef
2.
go back to reference Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed
3.
go back to reference Bosa EO, Mgbeogu CM (1983) Fluted pumpkin, Telfairia occidentalis: West African vegetable crop. Econ Bot 37:145–149CrossRef Bosa EO, Mgbeogu CM (1983) Fluted pumpkin, Telfairia occidentalis: West African vegetable crop. Econ Bot 37:145–149CrossRef
4.
go back to reference Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JCF, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRefPubMed
5.
go back to reference Idris A, Al-Saleh M, Piatek MJ, Al-Shahwan I, Ali S, Brown JK (2014) Viral metagenomics: analysis of begomoviruses by illumina high-throughput sequencing. Viruses 6:1219–1236CrossRefPubMedPubMedCentral Idris A, Al-Saleh M, Piatek MJ, Al-Shahwan I, Ali S, Brown JK (2014) Viral metagenomics: analysis of begomoviruses by illumina high-throughput sequencing. Viruses 6:1219–1236CrossRefPubMedPubMedCentral
6.
go back to reference Muhire B, Martin DP, Brown JK, Navas-Castillo Moriones JE, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424CrossRefPubMed Muhire B, Martin DP, Brown JK, Navas-Castillo Moriones JE, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424CrossRefPubMed
7.
go back to reference Olufemi JA, Kumar PL, Mgbechi-Ezeri JU, Naidu RA (2010) Two new legumviruses (genus begomovirus) naturally infecting soybean in Nigeria. Arch Virol 155:643–656CrossRef Olufemi JA, Kumar PL, Mgbechi-Ezeri JU, Naidu RA (2010) Two new legumviruses (genus begomovirus) naturally infecting soybean in Nigeria. Arch Virol 155:643–656CrossRef
8.
go back to reference Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Ann Rev Phytopathol 43:361–394CrossRef Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Ann Rev Phytopathol 43:361–394CrossRef
9.
go back to reference Roossinck MJ (2012) Plant virus metagenomics: biodiversity and ecology. Annu Rev Genet 46:359–369CrossRefPubMed Roossinck MJ (2012) Plant virus metagenomics: biodiversity and ecology. Annu Rev Genet 46:359–369CrossRefPubMed
11.
go back to reference Schippers RR (2000) African indigenous vegetables. an overview of the cultural species. Natural Resources Institute/ACP-EU Technical Centre for Agricultural and Rural Cooperation, Chatham Schippers RR (2000) African indigenous vegetables. an overview of the cultural species. Natural Resources Institute/ACP-EU Technical Centre for Agricultural and Rural Cooperation, Chatham
12.
go back to reference Ngen SeqMan (2012) Version 3. DNASTAR Inc., Madison Ngen SeqMan (2012) Version 3. DNASTAR Inc., Madison
13.
go back to reference Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149:97–102CrossRefPubMed Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149:97–102CrossRefPubMed
14.
Metadata
Title
Complete genome sequence of a new bipartite begomovirus infecting fluted pumpkin (Telfairia occidentalis) plants in Cameroon
Authors
Walter N. Leke
Behnam Khatabi
Vincent N. Fondong
Judith K. Brown
Publication date
01-08-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2915-7

Other articles of this Issue 8/2016

Archives of Virology 8/2016 Go to the issue
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.