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Archives of Virology
Published in: Archives of Virology 12/2017

01-12-2017 | Brief Report

Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum

Authors: Ran Hee Yoo, Seung-Won Lee, Seungmo Lim, Fumei Zhao, Davaajargal Igori, Dasom Baek, Jin-Sung Hong, Su-Heon Lee, Jae Sun Moon

Published in: Archives of Virology | Issue 12/2017

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Abstract

Two novel viruses, isolated in Bonghwa, Republic of Korea, from an Ixeridium dentatum plant with yellowing mottle symptoms, have been provisionally named Ixeridium yellow mottle-associated virus 1 (IxYMaV-1) and Ixeridium yellow mottle-associated virus 2 (IxYMaV-2). IxYMaV-1 has a genome of 6,017 nucleotides sharing a 56.4% sequence identity with that of cucurbit aphid-borne yellows virus (genus Polerovirus). The IxYMaV-2 genome of 4,196 nucleotides has a sequence identity of less than 48.3% with e other species classified within the genus Umbravirus. Genome properties and phylogenetic analysis suggested that IxYMaV-1 and -2 are representative isolates of new species classifiable within the genus Polerovirus and Umbravirus, respectively.
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Literature
1.
Stuart G, Moffett K, Bozarth RF (2004) A whole genome perspective on the phylogeny of the plant virus family Tombusviridae. Arch Virol 149:1595–1610CrossRefPubMed
2.
Syller J (2003) Molecular and biological features of umbraviruses the unusual plant viruses lacking genetic information for a capsid protein. Physiol Mol Plant P 63:35–46CrossRef
3.
Taliansky M, Roberts IM, Kalinina N, Ryabov EV, Raj SK, Robinson DJ, Oparka KJ (2003) An umbraviral protein, involved in long-distance RNA movement, binds viral RNA and forms unique, protective ribonucleoprotein complexes. J Virol 77:3031–3040CrossRefPubMedPubMedCentral
4.
Taliansky ME, Robinson DJ (2003) Molecular biology of umbraviruses: phantom warriors. J Gen Virol 84:1951–1960CrossRefPubMed
5.
Miller WA, Liu S, Beckett R (2002) Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Mol Plant Pathol 3:177–183CrossRefPubMed
6.
7.
Peter KA, Liang D, Palukaitis P, Gray SM (2008) Small deletions in the potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. J Gen Virol 89:2037–2045CrossRefPubMed
8.
Pfeffer S, Dunoyer P, Heim F, Richards KE, Jonard G, Ziegler-Graff V (2002) P0 of beet western yellows virus is a suppressor of posttranscriptional gene silencing. J Virol 76:6815–6824CrossRefPubMedPubMedCentral
9.
Park EK, Sung JH, Trinh HT, Bae EA, Yun HK, Hong SS, Kim DH (2008) Lactic acid bacterial fermentation increases the antiallergic effects of Ixeris dentata. J Microbiol Biotechnol 18:308–313PubMed
10.
Nam M, Kim SM, Domier LL, Koh S, Moon JK, Choi HS, Kim HG, Moon JS, Lee SH (2009) Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean. Arch Virol 154:1679–1684CrossRefPubMed
11.
Garcia A, van Duin J, Pleij CW (1993) Differential response to frameshift signals in eukaryotic and prokaryotic translational systems. Nucleic Acids Res 21:401–406CrossRefPubMedPubMedCentral
12.
Kujawa AB, Drugeon G, Hulanicka D, Haenni AL (1993) Structural requirements for efficient translational frameshifting in the synthesis of the putative viral RNA-dependent RNA polymerase of potato leafroll virus. Nucleic Acids Res 21:2165–2171CrossRefPubMedPubMedCentral
13.
King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses. Elsevier, Academic Press, Amsterdam, Cambridge
14.
15.
16.
Metadata
Title
Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum
Authors
Ran Hee Yoo
Seung-Won Lee
Seungmo Lim
Fumei Zhao
Davaajargal Igori
Dasom Baek
Jin-Sung Hong
Su-Heon Lee
Jae Sun Moon
Publication date
01-12-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 12/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3512-0

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