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Published in: BMC Infectious Diseases 1/2022

Open Access 01-12-2022 | Triage | Research

Clinical prediction models for diagnosis of COVID-19 among adult patients: a validation and agreement study

Authors: Nadia Dardenne, Médéa Locquet, Anh Nguyet Diep, Allison Gilbert, Sophie Delrez, Charlotte Beaudart, Christian Brabant, Alexandre Ghuysen, Anne-Françoise Donneau, Olivier Bruyère

Published in: BMC Infectious Diseases | Issue 1/2022

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Abstract

Background

Since the beginning of the pandemic, hospitals have been constantly overcrowded, with several observed waves of infected cases and hospitalisations. To avoid as much as possible this situation, efficient tools to facilitate the diagnosis of COVID-19 are needed.

Objective

To evaluate and compare prediction models to diagnose COVID-19 identified in a systematic review published recently using performance indicators such as discrimination and calibration measures.

Methods

A total of 1618 adult patients present at two Emergency Department triage centers and for whom qRT-PCR tests had been performed were included in this study. Six previously published models were reconstructed and assessed using diagnostic tests as sensitivity (Se) and negative predictive value (NPV), discrimination (Area Under the Roc Curve (AUROC)) and calibration measures. Agreement was also measured between them using Kappa’s coefficient and IntraClass Correlation Coefficient (ICC). A sensitivity analysis has been conducted by waves of patients.

Results

Among the 6 selected models, those based only on symptoms and/or risk exposure were found to be less efficient than those based on biological parameters and/or radiological examination with smallest AUROC values (< 0.80). However, all models showed good calibration and values above > 0.75 for Se and NPV but poor agreement (Kappa and ICC < 0.5) between them. The results of the first wave were similar to those of the second wave.

Conclusion

Although quite acceptable and similar results were found between all models, the importance of radiological examination was also emphasized, making it difficult to find an appropriate triage system to classify patients at risk for COVID-19.
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Literature
6.
go back to reference Arevalo-Rodriguez I, Buitrago-Garcia D, Simancas-Racines D, Zambrano-Achig P, Del Campo R, Ciapponi A, et al. False-negative results of initial RT-PCR assays for COVID-19: a systematic review. PLoS ONE. 2020;15(12):e0242958.CrossRef Arevalo-Rodriguez I, Buitrago-Garcia D, Simancas-Racines D, Zambrano-Achig P, Del Campo R, Ciapponi A, et al. False-negative results of initial RT-PCR assays for COVID-19: a systematic review. PLoS ONE. 2020;15(12):e0242958.CrossRef
8.
go back to reference Wynants L, Van Calster B, Collins GS, Riley RD, Heinze G, Schuit E, et al. Prediction models for diagnosis and prognosis of COVID-19: systematic review and critical appraisal. BMJ. 2020;369:26. Wynants L, Van Calster B, Collins GS, Riley RD, Heinze G, Schuit E, et al. Prediction models for diagnosis and prognosis of COVID-19: systematic review and critical appraisal. BMJ. 2020;369:26.
9.
11.
go back to reference Wolff RF, Moons KGM, Riley RD, Whiting PF, Westwood M, Collins GS, et al. PROBAST: a tool to assess the risk of bias and applicability of prediction model studies. Ann Intern Med. 2019;170(1):51.CrossRef Wolff RF, Moons KGM, Riley RD, Whiting PF, Westwood M, Collins GS, et al. PROBAST: a tool to assess the risk of bias and applicability of prediction model studies. Ann Intern Med. 2019;170(1):51.CrossRef
12.
go back to reference Vieceli T, de OliveiraFilho CM, Berger M, Saadi MP, Salvador PA, Anizelli LB, et al. A predictive score for COVID-19 diagnosis using clinical, laboratory and chest image data. Brazilian J Infect Dis. 2020;24(4):343–8.CrossRef Vieceli T, de OliveiraFilho CM, Berger M, Saadi MP, Salvador PA, Anizelli LB, et al. A predictive score for COVID-19 diagnosis using clinical, laboratory and chest image data. Brazilian J Infect Dis. 2020;24(4):343–8.CrossRef
13.
go back to reference Tordjman M, Mekki A, Mali RD, Saab I, Chassagnon G, Guillo E, et al. Pre-test probability for SARS-Cov-2-related infection score: the PARIS score. PLoS ONE. 2020;15:e0243342.CrossRef Tordjman M, Mekki A, Mali RD, Saab I, Chassagnon G, Guillo E, et al. Pre-test probability for SARS-Cov-2-related infection score: the PARIS score. PLoS ONE. 2020;15:e0243342.CrossRef
14.
go back to reference Kurstjens S, van der Horst A, Herpers R, Geerits MWL, Kluiters-De Hingh YCM, Göttgens EL, et al. Rapid identification of SARS-CoV-2-infected patients at the emergency department using routine testing. Clin Chem Lab Med. 2020;58(9):1587–93.CrossRef Kurstjens S, van der Horst A, Herpers R, Geerits MWL, Kluiters-De Hingh YCM, Göttgens EL, et al. Rapid identification of SARS-CoV-2-infected patients at the emergency department using routine testing. Clin Chem Lab Med. 2020;58(9):1587–93.CrossRef
16.
go back to reference Nakakubo S, Suzuki M, Kamada K, Yamashita Y, Nakamura J, Horii H, et al. Proposal of COVID-19 clinical risk score for the management of suspected COVID-19 cases: a case control study. BMC Infect Dis. 2020;20(1). Nakakubo S, Suzuki M, Kamada K, Yamashita Y, Nakamura J, Horii H, et al. Proposal of COVID-19 clinical risk score for the management of suspected COVID-19 cases: a case control study. BMC Infect Dis. 2020;20(1).
17.
go back to reference Fink DL, Khan PY, Goldman N, Cai J, Hone L, Mooney C, et al. Development and internal validation of a diagnostic prediction model for COVID-19 at time of admission to hospital. QJM An Int J Med. 2020;114:699–705.CrossRef Fink DL, Khan PY, Goldman N, Cai J, Hone L, Mooney C, et al. Development and internal validation of a diagnostic prediction model for COVID-19 at time of admission to hospital. QJM An Int J Med. 2020;114:699–705.CrossRef
21.
go back to reference Steyerberg EW, Vickers AJ, Cook NR, Gerds T, Gonen M, Obuchowski N, et al. Assessing the performance of prediction models: a framework for traditional and novel measures. Epidemiology. 2010;21:128–38.CrossRef Steyerberg EW, Vickers AJ, Cook NR, Gerds T, Gonen M, Obuchowski N, et al. Assessing the performance of prediction models: a framework for traditional and novel measures. Epidemiology. 2010;21:128–38.CrossRef
22.
go back to reference Lindhiem O, Petersen IT, Mentch LK, Youngstrom EA. The importance of calibration in clinical psychology. Assessment. 2020;27:840–54.CrossRef Lindhiem O, Petersen IT, Mentch LK, Youngstrom EA. The importance of calibration in clinical psychology. Assessment. 2020;27:840–54.CrossRef
23.
go back to reference Stevens RJ, Poppe KK. Validation of clinical prediction models: what does the “calibration slope” really measure? J Clin Epidemiol. 2020;1(118):93–9.CrossRef Stevens RJ, Poppe KK. Validation of clinical prediction models: what does the “calibration slope” really measure? J Clin Epidemiol. 2020;1(118):93–9.CrossRef
24.
go back to reference McGraw KO, Wong SP. Forming inferences about some intraclass correlation coefficients. Psychol Methods. 1996;1(1):30–46.CrossRef McGraw KO, Wong SP. Forming inferences about some intraclass correlation coefficients. Psychol Methods. 1996;1(1):30–46.CrossRef
25.
go back to reference Koo TK, Li MY. A guideline of selecting and reporting intraclass correlation coefficients for reliability research. J Chiropr Med. 2016;15(2):155.CrossRef Koo TK, Li MY. A guideline of selecting and reporting intraclass correlation coefficients for reliability research. J Chiropr Med. 2016;15(2):155.CrossRef
27.
go back to reference Hallgren KA. Computing inter-rater reliability for observational data: an overview and tutorial. Tutor Quant Methods Psychol. 2012;8(1):23.CrossRef Hallgren KA. Computing inter-rater reliability for observational data: an overview and tutorial. Tutor Quant Methods Psychol. 2012;8(1):23.CrossRef
28.
go back to reference Aguayo GA, Donneau AF, Vaillant MT, Schritz A, Franco OH, Stranges S, et al. Agreement between 35 published frailty scores in the general population. Am J Epidemiol. 2017;186(4):420–34.CrossRef Aguayo GA, Donneau AF, Vaillant MT, Schritz A, Franco OH, Stranges S, et al. Agreement between 35 published frailty scores in the general population. Am J Epidemiol. 2017;186(4):420–34.CrossRef
29.
go back to reference Liu Y, De A. Multiple imputation by fully conditional specification for dealing with missing data in a large epidemiologic study. Int J Stat Med Res. 2015;4(3):287–95.CrossRef Liu Y, De A. Multiple imputation by fully conditional specification for dealing with missing data in a large epidemiologic study. Int J Stat Med Res. 2015;4(3):287–95.CrossRef
33.
go back to reference GitHub-cran/BlandAltmanLeh: This is a read-only mirror of the CRAN R package repository. BlandAltmanLeh—Plots (Slightly Extended) Bland-Altman Plots [Internet]. [cited 2021 Apr 20]. Available from: https://github.com/cran/BlandAltmanLeh. GitHub-cran/BlandAltmanLeh: This is a read-only mirror of the CRAN R package repository. BlandAltmanLeh—Plots (Slightly Extended) Bland-Altman Plots [Internet]. [cited 2021 Apr 20]. Available from: https://​github.​com/​cran/​BlandAltmanLeh.
34.
go back to reference Vanbelle S. Comparing dependent kappa coefficients obtained on multilevel data. Biometrical J. 2017;59(5):1016–34.CrossRef Vanbelle S. Comparing dependent kappa coefficients obtained on multilevel data. Biometrical J. 2017;59(5):1016–34.CrossRef
35.
go back to reference Matthias Gamer A, Matthias Gamer M. Package “irr” Title Various Coefficients of Interrater Reliability and Agreement [Internet]. 2019 [cited 2021 Apr 20]. Available from: https://www.r-project.org. Matthias Gamer A, Matthias Gamer M. Package “irr” Title Various Coefficients of Interrater Reliability and Agreement [Internet]. 2019 [cited 2021 Apr 20]. Available from: https://​www.​r-project.​org.
37.
go back to reference Vieceli T, de Oliveira Filho CM, Berger M, Saadi MP, Salvador PA, Anizelli LB, et al. A predictive score for COVID-19 diagnosis using clinical, laboratory and chest image data. Brazilian J Infect Dis. 2020;24(4):343–8.CrossRef Vieceli T, de Oliveira Filho CM, Berger M, Saadi MP, Salvador PA, Anizelli LB, et al. A predictive score for COVID-19 diagnosis using clinical, laboratory and chest image data. Brazilian J Infect Dis. 2020;24(4):343–8.CrossRef
38.
go back to reference Aldobyany A, Touman A, Ghaleb N, Alsaggaf R, Murtaza N, Hamada A, et al. Correlation between the COVID-19 respiratory triage score and SARS-COV-2 PCR test. Front Med. 2020;7: 605689.CrossRef Aldobyany A, Touman A, Ghaleb N, Alsaggaf R, Murtaza N, Hamada A, et al. Correlation between the COVID-19 respiratory triage score and SARS-COV-2 PCR test. Front Med. 2020;7: 605689.CrossRef
39.
go back to reference Tordjman M, Mekki A, Mali RD, Saab I, Chassagnon G, Guillo E, et al. Pre-test probability for SARS-Cov-2-related infection score: the PARIS score. PLoS ONE. 2020;15: e0243342.CrossRef Tordjman M, Mekki A, Mali RD, Saab I, Chassagnon G, Guillo E, et al. Pre-test probability for SARS-Cov-2-related infection score: the PARIS score. PLoS ONE. 2020;15: e0243342.CrossRef
41.
go back to reference Soltan AAS, Yang J, Pattanshetty R, Novak A, Yang Y, Rohanian O, et al. Real-world evaluation of rapid and laboratory-free COVID-19 triage for emergency care: external validation and pilot deployment of artificial intelligence driven screening. Lancet Digit Heal. 2022;4(4):e266–78.CrossRef Soltan AAS, Yang J, Pattanshetty R, Novak A, Yang Y, Rohanian O, et al. Real-world evaluation of rapid and laboratory-free COVID-19 triage for emergency care: external validation and pilot deployment of artificial intelligence driven screening. Lancet Digit Heal. 2022;4(4):e266–78.CrossRef
43.
go back to reference Martha JW, Wibowo A, Pranata R. Prognostic value of elevated lactate dehydrogenase in patients with COVID-19: a systematic review and meta-analysis. Postgrad Med J. 2021;1–6. Available from: http://pmj.bmj.com/. Martha JW, Wibowo A, Pranata R. Prognostic value of elevated lactate dehydrogenase in patients with COVID-19: a systematic review and meta-analysis. Postgrad Med J. 2021;1–6. Available from: http://​pmj.​bmj.​com/​.
45.
go back to reference Iftimie S, Lopez-Azcona AF, Vallverdu I, Hernandez-Flix S, De Febrer G, Parra S, et al. First and second waves of coronavirus disease-19: a comparative study in hospitalized patients in Reus, Spain. PLoS One. 2021;16. Available from: /pmc/articles/PMC8011765/. Iftimie S, Lopez-Azcona AF, Vallverdu I, Hernandez-Flix S, De Febrer G, Parra S, et al. First and second waves of coronavirus disease-19: a comparative study in hospitalized patients in Reus, Spain. PLoS One. 2021;16. Available from: /pmc/articles/PMC8011765/.
47.
go back to reference Steyerberg EW. Clinical prediction models: a practical approach to development, validation, and updating (Ser. Statistics for biology and health). Berlin: Springer; 2019.CrossRef Steyerberg EW. Clinical prediction models: a practical approach to development, validation, and updating (Ser. Statistics for biology and health). Berlin: Springer; 2019.CrossRef
48.
go back to reference Bar S, Lecourtois A, Diouf M, Goldberg E, Bourbon C, Arnaud E, et al. The association of lung ultrasound images with COVID-19 infection in an emergency room cohort. Anaesthesia. 2020;75(12):1620–5.CrossRef Bar S, Lecourtois A, Diouf M, Goldberg E, Bourbon C, Arnaud E, et al. The association of lung ultrasound images with COVID-19 infection in an emergency room cohort. Anaesthesia. 2020;75(12):1620–5.CrossRef
49.
go back to reference McDonald SA, Medford RJ, Basit MA, Diercks DB, Courtney DM. Derivation with internal validation of a multivariable predictive model to predict COVID-19 test results in emergency department patients. Acad Emerg Med. 2020;28(2):206–14.CrossRef McDonald SA, Medford RJ, Basit MA, Diercks DB, Courtney DM. Derivation with internal validation of a multivariable predictive model to predict COVID-19 test results in emergency department patients. Acad Emerg Med. 2020;28(2):206–14.CrossRef
50.
go back to reference Huang D, Wang T, Chen Z, Yang H, Yao R, Liang Z. A novel risk score to predict diagnosis with coronavirus disease 2019 (COVID-19) in suspected patients: a retrospective, multicenter, and observational study. J Med Virol. 2020;92(11):2709–17.CrossRef Huang D, Wang T, Chen Z, Yang H, Yao R, Liang Z. A novel risk score to predict diagnosis with coronavirus disease 2019 (COVID-19) in suspected patients: a retrospective, multicenter, and observational study. J Med Virol. 2020;92(11):2709–17.CrossRef
51.
go back to reference Sung J, Choudry N, Bachour R. Development and validation of a simple risk score for diagnosing COVID-19 in the emergency room. Epidemiol Infect. 2020;148:1–17.CrossRef Sung J, Choudry N, Bachour R. Development and validation of a simple risk score for diagnosing COVID-19 in the emergency room. Epidemiol Infect. 2020;148:1–17.CrossRef
52.
go back to reference Callejon-Leblic MA, Moreno-Luna R, Del Cuvillo A, Reyes-Tejero IM, Garcia-Villaran MA, Santos-Peña M, et al. Loss of smell and taste can accurately predict COVID-19 infection: a machine-learning approach. J Clin Med. 2021;10(4):570.CrossRef Callejon-Leblic MA, Moreno-Luna R, Del Cuvillo A, Reyes-Tejero IM, Garcia-Villaran MA, Santos-Peña M, et al. Loss of smell and taste can accurately predict COVID-19 infection: a machine-learning approach. J Clin Med. 2021;10(4):570.CrossRef
53.
go back to reference Gupta-Wright A, Macleod CK, Barrett J, Filson SA, Corrah T, Parris V, et al. False-negative RT-PCR for COVID-19 and a diagnostic risk score: a retrospective cohort study among patients admitted to hospital. BMJ Open. 2021;11(2): e047110.CrossRef Gupta-Wright A, Macleod CK, Barrett J, Filson SA, Corrah T, Parris V, et al. False-negative RT-PCR for COVID-19 and a diagnostic risk score: a retrospective cohort study among patients admitted to hospital. BMJ Open. 2021;11(2): e047110.CrossRef
54.
go back to reference Plante TB, Blau AM, Berg AN, Weinberg AS, Jun IC, Tapson VF, et al. Development and external validation of a machine learning tool to rule out COVID-19 among adults in the emergency department using routine blood tests: a large, multicenter, real-world study. J Med Internet Res. 2020;22(12): e24048.CrossRef Plante TB, Blau AM, Berg AN, Weinberg AS, Jun IC, Tapson VF, et al. Development and external validation of a machine learning tool to rule out COVID-19 among adults in the emergency department using routine blood tests: a large, multicenter, real-world study. J Med Internet Res. 2020;22(12): e24048.CrossRef
Metadata
Title
Clinical prediction models for diagnosis of COVID-19 among adult patients: a validation and agreement study
Authors
Nadia Dardenne
Médéa Locquet
Anh Nguyet Diep
Allison Gilbert
Sophie Delrez
Charlotte Beaudart
Christian Brabant
Alexandre Ghuysen
Anne-Françoise Donneau
Olivier Bruyère
Publication date
01-12-2022
Publisher
BioMed Central
Keywords
Triage
COVID-19
Published in
BMC Infectious Diseases / Issue 1/2022
Electronic ISSN: 1471-2334
DOI
https://doi.org/10.1186/s12879-022-07420-4

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