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Published in: Archives of Virology 5/2018

01-05-2018 | Annotated Sequence Record

The first complete genome sequence of narcissus latent virus from Narcissus

Authors: Fangluan Gao, Jianguo Shen, Furong Liao, Wei Cai, Shuangqing Lin, Hongkai Yang, Shouling Chen

Published in: Archives of Virology | Issue 5/2018

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Abstract

The complete sequence of a narcissus virus isolated from the Netherlands (Narv-NL) was determined to be 8172 nucleotides in length with an open reading frame encoding for 2624 amino acids. Phylogenetic analysis indicates that Narv-NL is clustered with high confidence among representative members from the genus Macluravirus, including artichoke latent virus (ArLV) and Chinese yam necrotic mosaic virus (CYNMV). Sequence analyses indicated Narv-NL shares 67%-69% nucleotide and 51%-68% amino acid sequence identity with ArLV and CYNMV either in the complete ORF or the coat protein (CP) gene, whereas it had 81%-99 % nucleotide and 80%-99 % amino acid sequence identity with the corresponding CP sequences of narcissus latent virus (NLV) isolates, suggesting that Narv-NL is a member of NLV. To our knowledge, this is the first report of the complete sequence of a NLV isolate.
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Literature
1.
go back to reference Abascal F, Zardoya R, Telford MJ (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res 38:W7–W13CrossRefPubMedPubMedCentral Abascal F, Zardoya R, Telford MJ (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res 38:W7–W13CrossRefPubMedPubMedCentral
2.
go back to reference Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487CrossRefPubMed Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487CrossRefPubMed
3.
go back to reference Anbari S, Tohidfar M, Hosseini R, Haddad R (2007) Somatic Embryogenesis Induction in Narcissus papyraceus cv. Shirazi. Plant Tissue Cul Biotechnol 17:37–46 Anbari S, Tohidfar M, Hosseini R, Haddad R (2007) Somatic Embryogenesis Induction in Narcissus papyraceus cv. Shirazi. Plant Tissue Cul Biotechnol 17:37–46
4.
go back to reference Berniak H, Komorowska B, Sochacki D (2013) Detection of Narcissus latent virus isolates using one-step RT-PCR assay. J Hort Res 21:11–14 Berniak H, Komorowska B, Sochacki D (2013) Detection of Narcissus latent virus isolates using one-step RT-PCR assay. J Hort Res 21:11–14
6.
go back to reference Jin J, Shen JG, Cai W, Xie GH, Liao FR, Gao FL, Ma JF, Chen XH, Wu ZJ (2017) Narcissus yellow stripe virus and Narcissus mosaic virus detection in Narcissus via multiplex TaqMan-based reverse transcription-PCR assay. J Appl Microbiol 122:1299–1309CrossRefPubMed Jin J, Shen JG, Cai W, Xie GH, Liao FR, Gao FL, Ma JF, Chen XH, Wu ZJ (2017) Narcissus yellow stripe virus and Narcissus mosaic virus detection in Narcissus via multiplex TaqMan-based reverse transcription-PCR assay. J Appl Microbiol 122:1299–1309CrossRefPubMed
7.
go back to reference Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14:587–589CrossRefPubMedPubMedCentral Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14:587–589CrossRefPubMedPubMedCentral
8.
go back to reference Katoh K, Standley DM (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Mol Biol Evol 30:772–780CrossRefPubMedPubMedCentral Katoh K, Standley DM (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Mol Biol Evol 30:772–780CrossRefPubMedPubMedCentral
9.
go back to reference King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam
10.
go back to reference Lin SQ, Shen JG, Gao FL, Cai W, Huang Z, Xie LY, Wu ZJ (2012) Complete genome sequence of narcissus late season yellows virus infecting Chinese narcissus in China. Arch Virol 157:1821–1824CrossRefPubMed Lin SQ, Shen JG, Gao FL, Cai W, Huang Z, Xie LY, Wu ZJ (2012) Complete genome sequence of narcissus late season yellows virus infecting Chinese narcissus in China. Arch Virol 157:1821–1824CrossRefPubMed
11.
go back to reference Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2014) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol 32:268–274CrossRefPubMedPubMedCentral Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2014) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol 32:268–274CrossRefPubMedPubMedCentral
12.
go back to reference Ohshima K, Nomiyama R, Mitoma S, Honda Y, Yasaka R, Tomimura K (2016) Evolutionary rates and genetic diversities of mixed potyviruses in Narcissus. Infect Gene Evol 45:213–223CrossRef Ohshima K, Nomiyama R, Mitoma S, Honda Y, Yasaka R, Tomimura K (2016) Evolutionary rates and genetic diversities of mixed potyviruses in Narcissus. Infect Gene Evol 45:213–223CrossRef
13.
go back to reference Wei T, Pearson MN, Cohen D (2007) First report of narcissus latent virus in New Zealand. Plant Pathol 56:720CrossRef Wei T, Pearson MN, Cohen D (2007) First report of narcissus latent virus in New Zealand. Plant Pathol 56:720CrossRef
14.
go back to reference Wylie SJ, Jones MGK (2012) Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming. Arch Virol 157:1471–1480CrossRefPubMed Wylie SJ, Jones MGK (2012) Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming. Arch Virol 157:1471–1480CrossRefPubMed
15.
go back to reference Zhang P, Peng J, Guo H, Chen J, Chen S, Wang J (2016) Complete genome sequence of yam chlorotic necrotic mosaic virus from Dioscorea parviflora. Arch Virol 161:1715–1717CrossRefPubMed Zhang P, Peng J, Guo H, Chen J, Chen S, Wang J (2016) Complete genome sequence of yam chlorotic necrotic mosaic virus from Dioscorea parviflora. Arch Virol 161:1715–1717CrossRefPubMed
Metadata
Title
The first complete genome sequence of narcissus latent virus from Narcissus
Authors
Fangluan Gao
Jianguo Shen
Furong Liao
Wei Cai
Shuangqing Lin
Hongkai Yang
Shouling Chen
Publication date
01-05-2018
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 5/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-3741-x

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