Skip to main content
Top
Published in: European Journal of Clinical Microbiology & Infectious Diseases 7/2021

01-07-2021 | Streptococci | Brief Report

Development and standardization of a specific real-time PCR assay for the rapid detection of Candida auris

Authors: Ahmad Ibrahim, Sophie Alexandra Baron, Hanane Yousfi, Linda Hadjadj, Rym Lalaoui, Serge Morand, Jean-Marc Rolain, Fadi Bittar

Published in: European Journal of Clinical Microbiology & Infectious Diseases | Issue 7/2021

Login to get access

Abstract

Candida auris is an emerging multiresistant pathogen causing nosocomial fungal infection. Specific detection and identification are necessary. Our goal is to develop a new qPCR system that enables rapid detection of C. auris, based on a GPI (glycosyl-phosphatidylinositol) protein-encoding gene. This system is reproducible and sensitive with a limit of detection of 13 C. auris CFU/qPCR reaction. The 100% specificity of this system is confirmed on 2073 clinical and environmental samples, 50 different bacterial species, and 9 Candida spp. (70 strains). This system is suitable to correctly identify C. auris infections and to trace its source.
Literature
1.
go back to reference Kathuria S, Singh PK, Sharma C, Prakash A, Masih A, Kumar A et al (2015) Multidrug-resistant Candida auris misidentified as Candida haemulonii: characterization by matrix-assisted laser desorption ionization–time of flight mass spectrometry and DNA sequencing and its antifungal susceptibility profile variability by Vitek 2, CLSI broth microdilution, and Etest method. J Clin Microbiol 53(6):1823–1830CrossRef Kathuria S, Singh PK, Sharma C, Prakash A, Masih A, Kumar A et al (2015) Multidrug-resistant Candida auris misidentified as Candida haemulonii: characterization by matrix-assisted laser desorption ionization–time of flight mass spectrometry and DNA sequencing and its antifungal susceptibility profile variability by Vitek 2, CLSI broth microdilution, and Etest method. J Clin Microbiol 53(6):1823–1830CrossRef
2.
go back to reference Lockhart SR, Etienne KA, Vallabhaneni S, Farooqi J, Chowdhary A, Govender NP et al (2017) Simultaneous emergence of multidrug-resistant Candida auris on 3 continents confirmed by whole-genome sequencing and epidemiological analyses. Clin Infect Dis 64(2):134–140CrossRef Lockhart SR, Etienne KA, Vallabhaneni S, Farooqi J, Chowdhary A, Govender NP et al (2017) Simultaneous emergence of multidrug-resistant Candida auris on 3 continents confirmed by whole-genome sequencing and epidemiological analyses. Clin Infect Dis 64(2):134–140CrossRef
3.
go back to reference Chow NA, de Groot T, Badali H, Abastabar M, Chiller TM, Meis JF (2019) Potential fifth clade of Candida auris, Iran, 2018. Emerg Infect Dis 25(9):1780CrossRef Chow NA, de Groot T, Badali H, Abastabar M, Chiller TM, Meis JF (2019) Potential fifth clade of Candida auris, Iran, 2018. Emerg Infect Dis 25(9):1780CrossRef
4.
go back to reference Osei Sekyere J (2018) Candida auris: a systematic review and meta-analysis of current updates on an emerging multidrug-resistant pathogen. Microbiologyopen 7(4):e00578CrossRef Osei Sekyere J (2018) Candida auris: a systematic review and meta-analysis of current updates on an emerging multidrug-resistant pathogen. Microbiologyopen 7(4):e00578CrossRef
5.
go back to reference Sherry L, Ramage G, Kean R, Borman A, Johnson EM, Richardson MD, Rautemaa-Richardson R (2017) Biofilm-forming capability of highly virulent, multidrug-resistant Candida auris. Emerg Infect Dis 23(2):328CrossRef Sherry L, Ramage G, Kean R, Borman A, Johnson EM, Richardson MD, Rautemaa-Richardson R (2017) Biofilm-forming capability of highly virulent, multidrug-resistant Candida auris. Emerg Infect Dis 23(2):328CrossRef
6.
go back to reference Welsh RM, Bentz ML, Shams A, Houston H, Lyons A, Rose LJ, Litvintseva AP (2017) Survival, persistence, and isolation of the emerging multidrug-resistant pathogenic yeast Candida auris on a plastic health care surface. J Clin Microbiol 55(10):2996–3005CrossRef Welsh RM, Bentz ML, Shams A, Houston H, Lyons A, Rose LJ, Litvintseva AP (2017) Survival, persistence, and isolation of the emerging multidrug-resistant pathogenic yeast Candida auris on a plastic health care surface. J Clin Microbiol 55(10):2996–3005CrossRef
7.
go back to reference Satoh K, Makimura K, Hasumi Y, Nishiyama Y, Uchida K, Yamaguchi H (2009) Candida auris sp. nov., a novel ascomycetous yeast isolated from the external ear canal of an inpatient in a Japanese hospital. Microbiol Immunol 53(1):41–44CrossRef Satoh K, Makimura K, Hasumi Y, Nishiyama Y, Uchida K, Yamaguchi H (2009) Candida auris sp. nov., a novel ascomycetous yeast isolated from the external ear canal of an inpatient in a Japanese hospital. Microbiol Immunol 53(1):41–44CrossRef
8.
go back to reference Chowdhary A, Sharma C, Meis JF (2017) Candida auris: a rapidly emerging cause of hospital-acquired multidrug-resistant fungal infections globally. PLoS Pathog 13(5):e1006290CrossRef Chowdhary A, Sharma C, Meis JF (2017) Candida auris: a rapidly emerging cause of hospital-acquired multidrug-resistant fungal infections globally. PLoS Pathog 13(5):e1006290CrossRef
9.
go back to reference Fasciana T, Cortegiani A, Ippolito M, Giarratano A, Di Quattro O, Lipari D et al (2020) Candida auris: an overview of how to screen, detect, test and control this emerging pathogen. Antibiotics 9(11):778CrossRef Fasciana T, Cortegiani A, Ippolito M, Giarratano A, Di Quattro O, Lipari D et al (2020) Candida auris: an overview of how to screen, detect, test and control this emerging pathogen. Antibiotics 9(11):778CrossRef
10.
go back to reference Cortegiani A, Misseri G, Fasciana T, Giammanco A, Giarratano A, Chowdhary A (2018) Epidemiology, clinical characteristics, resistance, and treatment of infections by Candida auris. J Intensive Care 6(1):69CrossRef Cortegiani A, Misseri G, Fasciana T, Giammanco A, Giarratano A, Chowdhary A (2018) Epidemiology, clinical characteristics, resistance, and treatment of infections by Candida auris. J Intensive Care 6(1):69CrossRef
11.
go back to reference Vatanshenassan M, Boekhout T, Meis JF, Berman J, Chowdhary A, Ben-Ami R et al (2019) Candida auris identification and rapid antifungal susceptibility testing against echinocandins by MALDI-TOF MS. Front Cell Infect Microbiol 9:20CrossRef Vatanshenassan M, Boekhout T, Meis JF, Berman J, Chowdhary A, Ben-Ami R et al (2019) Candida auris identification and rapid antifungal susceptibility testing against echinocandins by MALDI-TOF MS. Front Cell Infect Microbiol 9:20CrossRef
12.
go back to reference Kordalewska M, Zhao Y, Lockhart SR, Chowdhary A, Berrio I, Perlin DS (2017) Rapid and accurate molecular identification of the emerging multidrug-resistant pathogen Candida auris. J Clin Microbiol 55(8):2445–2452CrossRef Kordalewska M, Zhao Y, Lockhart SR, Chowdhary A, Berrio I, Perlin DS (2017) Rapid and accurate molecular identification of the emerging multidrug-resistant pathogen Candida auris. J Clin Microbiol 55(8):2445–2452CrossRef
13.
go back to reference Khan Z, Ahmad S, Al-Sweih N, Joseph L, Alfouzan W, Asadzadeh M (2018) Increasing prevalence, molecular characterization and antifungal drug susceptibility of serial Candida auris isolates in Kuwait. PLoS One 13(4):e0195743CrossRef Khan Z, Ahmad S, Al-Sweih N, Joseph L, Alfouzan W, Asadzadeh M (2018) Increasing prevalence, molecular characterization and antifungal drug susceptibility of serial Candida auris isolates in Kuwait. PLoS One 13(4):e0195743CrossRef
14.
go back to reference Ruiz-Gaitán AC, Fernández-Pereira J, Valentin E, Tormo-Mas MA, Eraso E, Pemán J, de Groot PW (2018) Molecular identification of Candida auris by PCR amplification of species-specific GPI protein-encoding genes. Int J Med Microbiol 308(7):812–818CrossRef Ruiz-Gaitán AC, Fernández-Pereira J, Valentin E, Tormo-Mas MA, Eraso E, Pemán J, de Groot PW (2018) Molecular identification of Candida auris by PCR amplification of species-specific GPI protein-encoding genes. Int J Med Microbiol 308(7):812–818CrossRef
15.
go back to reference Sexton DJ, Kordalewska M, Bentz ML, Welsh RM, Perlin DS, Litvintseva AP (2018) Direct detection of emergent fungal pathogen Candida auris in clinical skin swabs by SYBR green-based quantitative PCR assay. J Clin Microbiol 56(12):e01337-18 Sexton DJ, Kordalewska M, Bentz ML, Welsh RM, Perlin DS, Litvintseva AP (2018) Direct detection of emergent fungal pathogen Candida auris in clinical skin swabs by SYBR green-based quantitative PCR assay. J Clin Microbiol 56(12):e01337-18
16.
go back to reference Arastehfar A, Fang W, Daneshnia F, Al-Hatmi AM, Liao W, Pan W et al (2019) Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiol 14(1):33–45CrossRef Arastehfar A, Fang W, Daneshnia F, Al-Hatmi AM, Liao W, Pan W et al (2019) Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiol 14(1):33–45CrossRef
17.
go back to reference Leach L, Zhu Y, Chaturvedi S (2018) Development and validation of a real-time PCR assay for rapid detection of Candida auris from surveillance samples. J Clin Microbiol 56(2) Leach L, Zhu Y, Chaturvedi S (2018) Development and validation of a real-time PCR assay for rapid detection of Candida auris from surveillance samples. J Clin Microbiol 56(2)
18.
go back to reference Ahmad A, Spencer JE, Lockhart SR, Singleton S, Petway DJ, Bagarozzi DA Jr, Herzegh OT (2019) A high-throughput and rapid method for accurate identification of emerging multidrug-resistant Candida auris. Mycoses 62(6):513–518CrossRef Ahmad A, Spencer JE, Lockhart SR, Singleton S, Petway DJ, Bagarozzi DA Jr, Herzegh OT (2019) A high-throughput and rapid method for accurate identification of emerging multidrug-resistant Candida auris. Mycoses 62(6):513–518CrossRef
19.
go back to reference Lima A, Widen R, Vestal G, Uy D, Silbert S (2019) A TaqMan probe-based real-time PCR assay for the rapid identification of the emerging multidrug-resistant pathogen Candida auris on the BD Max system. J Clin Microbiol 57(7):e01604–e01618CrossRef Lima A, Widen R, Vestal G, Uy D, Silbert S (2019) A TaqMan probe-based real-time PCR assay for the rapid identification of the emerging multidrug-resistant pathogen Candida auris on the BD Max system. J Clin Microbiol 57(7):e01604–e01618CrossRef
20.
go back to reference Olaitan AO, Thongmalayvong B, Akkhavong K, Somphavong S, Paboriboune P, Khounsy S et al (2015) Clonal transmission of a colistin-resistant Escherichia coli from a domesticated pig to a human in Laos. J Antimicrob Chemother 70(12):3402–3404PubMed Olaitan AO, Thongmalayvong B, Akkhavong K, Somphavong S, Paboriboune P, Khounsy S et al (2015) Clonal transmission of a colistin-resistant Escherichia coli from a domesticated pig to a human in Laos. J Antimicrob Chemother 70(12):3402–3404PubMed
21.
go back to reference Olaitan AO, Diene SM, Kempf M, Berrazeg M, Bakour S, Gupta SK et al (2014) Worldwide emergence of colistin resistance in Klebsiella pneumoniae from healthy humans and patients in Lao PDR, Thailand, Israel, Nigeria and France owing to inactivation of the PhoP/PhoQ regulator mgrB: an epidemiological and molecular study. Int J Antimicrob Agents 44(6):500–507CrossRef Olaitan AO, Diene SM, Kempf M, Berrazeg M, Bakour S, Gupta SK et al (2014) Worldwide emergence of colistin resistance in Klebsiella pneumoniae from healthy humans and patients in Lao PDR, Thailand, Israel, Nigeria and France owing to inactivation of the PhoP/PhoQ regulator mgrB: an epidemiological and molecular study. Int J Antimicrob Agents 44(6):500–507CrossRef
22.
go back to reference Lalaoui R, Djukovic A, Bakour S, Sanz J, Gonzalez-Barbera EM, Salavert M et al (2019) Detection of plasmid-mediated colistin resistance, mcr-1 gene, in Escherichia coli isolated from high-risk patients with acute leukemia in Spain. J Infect Chemother 25(8):605–609CrossRef Lalaoui R, Djukovic A, Bakour S, Sanz J, Gonzalez-Barbera EM, Salavert M et al (2019) Detection of plasmid-mediated colistin resistance, mcr-1 gene, in Escherichia coli isolated from high-risk patients with acute leukemia in Spain. J Infect Chemother 25(8):605–609CrossRef
23.
go back to reference Casadevall A, Kontoyiannis DP, Robert V (2019) On the emergence of Candida auris: climate change, azoles, swamps, and birds. MBio 10(4):e01397–e01319CrossRef Casadevall A, Kontoyiannis DP, Robert V (2019) On the emergence of Candida auris: climate change, azoles, swamps, and birds. MBio 10(4):e01397–e01319CrossRef
24.
go back to reference Misseri G, Ippolito M, Cortegiani A (2019) Global warming “heating up” the ICU through Candida auris infections: the climate changes theory. Crit Care 23(1):1–2CrossRef Misseri G, Ippolito M, Cortegiani A (2019) Global warming “heating up” the ICU through Candida auris infections: the climate changes theory. Crit Care 23(1):1–2CrossRef
25.
go back to reference Cortegiani A, Misseri G, Giarratano A, Bassetti M, Eyre D (2019) The global challenge of Candida auris in the intensive care unit. Crit Care 23(1):150 Cortegiani A, Misseri G, Giarratano A, Bassetti M, Eyre D (2019) The global challenge of Candida auris in the intensive care unit. Crit Care 23(1):150
Metadata
Title
Development and standardization of a specific real-time PCR assay for the rapid detection of Candida auris
Authors
Ahmad Ibrahim
Sophie Alexandra Baron
Hanane Yousfi
Linda Hadjadj
Rym Lalaoui
Serge Morand
Jean-Marc Rolain
Fadi Bittar
Publication date
01-07-2021
Publisher
Springer Berlin Heidelberg
Keyword
Streptococci
Published in
European Journal of Clinical Microbiology & Infectious Diseases / Issue 7/2021
Print ISSN: 0934-9723
Electronic ISSN: 1435-4373
DOI
https://doi.org/10.1007/s10096-021-04176-8

Other articles of this Issue 7/2021

European Journal of Clinical Microbiology & Infectious Diseases 7/2021 Go to the issue
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.