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Published in: Irish Journal of Medical Science (1971 -) 2/2015

01-06-2015 | Original Article

Predicting the probability of mortality of gastric cancer patients using decision tree

Authors: F. Mohammadzadeh, H. Noorkojuri, M. A. Pourhoseingholi, S. Saadat, A. R. Baghestani

Published in: Irish Journal of Medical Science (1971 -) | Issue 2/2015

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Abstract

Background

Gastric cancer is the fourth most common cancer worldwide. This reason motivated us to investigate and introduce gastric cancer risk factors utilizing statistical methods.

Aim

The aim of this study was to identify the most important factors influencing the mortality of patients who suffer from gastric cancer disease and to introduce a classification approach according to decision tree model for predicting the probability of mortality from this disease.

Methods

Data on 216 patients with gastric cancer, who were registered in Taleghani hospital in Tehran,Iran, were analyzed. At first, patients were divided into two groups: the dead and alive. Then, to fit decision tree model to our data, we randomly selected 20 % of dataset to the test sample and remaining dataset considered as the training sample. Finally, the validity of the model examined with sensitivity, specificity, diagnosis accuracy and the area under the receiver operating characteristic curve. The CART® version 6.0 and SPSS version 19.0 softwares were used for the analysis of the data.

Results

Diabetes, ethnicity, tobacco, tumor size, surgery, pathologic stage, age at diagnosis, exposure to chemical weapons and alcohol consumption were determined as effective factors on mortality of gastric cancer. The sensitivity, specificity and accuracy of decision tree were 0.72, 0.75 and 0.74 respectively.

Conclusions

The indices of sensitivity, specificity and accuracy represented that the decision tree model has acceptable accuracy to prediction the probability of mortality in gastric cancer patients. So a simple decision tree consisted of factors affecting on mortality of gastric cancer may help clinicians as a reliable and practical tool to predict the probability of mortality in these patients.
Literature
1.
go back to reference American Cancer Society (2012) Cancer facts & figures. American Cancer Society, Atlanta American Cancer Society (2012) Cancer facts & figures. American Cancer Society, Atlanta
2.
go back to reference American Cancer Society (2007) Global cancer facts & figures 2007 American Cancer Society (2007) Global cancer facts & figures 2007
5.
go back to reference Garcia M, Jemal A, Ward EM et al (2007) Global cancer facts & figures 2007. American Cancer Society, Atlanta Garcia M, Jemal A, Ward EM et al (2007) Global cancer facts & figures 2007. American Cancer Society, Atlanta
6.
go back to reference Wu K, Nie Y, Guo C et al (2009) Molecular basis of therapeutic approaches to gastric cancer. J Gastroenterol Hepatol 24:37–41CrossRefPubMed Wu K, Nie Y, Guo C et al (2009) Molecular basis of therapeutic approaches to gastric cancer. J Gastroenterol Hepatol 24:37–41CrossRefPubMed
9.
go back to reference Nardone G, Rocco A, Malfertheiner P (2004) Review article: Helicobacter pylori and molecular events in precancerous gastric lesions. Aliment Pharmacol Ther 20(3):261–270CrossRefPubMed Nardone G, Rocco A, Malfertheiner P (2004) Review article: Helicobacter pylori and molecular events in precancerous gastric lesions. Aliment Pharmacol Ther 20(3):261–270CrossRefPubMed
11.
go back to reference Sadjadi A, Malekzadeh R, Derakhshan MH et al (2003) Cancer occurrence in Ardabil: results of a population-based cancer registry from Iran. Int J Cancer 107:113–118CrossRefPubMed Sadjadi A, Malekzadeh R, Derakhshan MH et al (2003) Cancer occurrence in Ardabil: results of a population-based cancer registry from Iran. Int J Cancer 107:113–118CrossRefPubMed
12.
go back to reference Derakhshan MH, Yazdanbod A, Sadjadi AR et al (2004) High incidence of adenocarcinoma arising from the right side of the gastric cardia in NW Iran. Gut 53(9):1262–1266CrossRefPubMedCentralPubMed Derakhshan MH, Yazdanbod A, Sadjadi AR et al (2004) High incidence of adenocarcinoma arising from the right side of the gastric cardia in NW Iran. Gut 53(9):1262–1266CrossRefPubMedCentralPubMed
13.
go back to reference Oluwasola A, Ogunbiyi J (2004) Chronic gastritis and Helicobacter pylori infection in University College Hospital Ibadan, Nigeria—a study of 85 fibreoptic gastric biopsies. Niger J Med 13(4):372–378PubMed Oluwasola A, Ogunbiyi J (2004) Chronic gastritis and Helicobacter pylori infection in University College Hospital Ibadan, Nigeria—a study of 85 fibreoptic gastric biopsies. Niger J Med 13(4):372–378PubMed
14.
go back to reference Crew KD, Neugut A (2004) Epidemiology of upper gastrointestinal malignancies. Semin Oncol 31(4):450–464CrossRefPubMed Crew KD, Neugut A (2004) Epidemiology of upper gastrointestinal malignancies. Semin Oncol 31(4):450–464CrossRefPubMed
15.
go back to reference Sadjadi A, Nouraie M, Mohagheghi MA et al (2005) Cancer occurrence in Iran in 2002, an international perspective. Asian Pac J Cancer Prev 6:359–363PubMed Sadjadi A, Nouraie M, Mohagheghi MA et al (2005) Cancer occurrence in Iran in 2002, an international perspective. Asian Pac J Cancer Prev 6:359–363PubMed
16.
go back to reference Crowley J, Ankerst DP (2006) Hand book of statistics in clinical oncology, 2nd edn. Chapman & Hall, London Crowley J, Ankerst DP (2006) Hand book of statistics in clinical oncology, 2nd edn. Chapman & Hall, London
17.
go back to reference Breiman L, Friedman JH, Olshen RA et al (1984) Classification and regression trees. Chapman & Hall, New York Breiman L, Friedman JH, Olshen RA et al (1984) Classification and regression trees. Chapman & Hall, New York
18.
go back to reference Morris J (2004) Beyond clinical documentation: using the EMR as a quality tool. Health Manag Technol 25(11):22–24 Morris J (2004) Beyond clinical documentation: using the EMR as a quality tool. Health Manag Technol 25(11):22–24
19.
go back to reference Elia GP (2009) A decision tree for weather prediction. EJS 61(1):77–82 Elia GP (2009) A decision tree for weather prediction. EJS 61(1):77–82
20.
go back to reference Suresh Krishna Reddy M, Jayasree R (2012) Extending decision tree classifiers FOR uncertain data. IJESAT 2(4):1030–1034 Suresh Krishna Reddy M, Jayasree R (2012) Extending decision tree classifiers FOR uncertain data. IJESAT 2(4):1030–1034
21.
go back to reference Kantardzic M (2003) Data mining: concepts, models, methods, and algorithms. Wiley, New York Kantardzic M (2003) Data mining: concepts, models, methods, and algorithms. Wiley, New York
22.
go back to reference Lee S (2010) Using data envelopment analysis and decision trees for efficiency analysis and recommendation of B2C controls. Decis Support Syst 49:486–497CrossRef Lee S (2010) Using data envelopment analysis and decision trees for efficiency analysis and recommendation of B2C controls. Decis Support Syst 49:486–497CrossRef
24.
go back to reference Patel N, Upadhyay S (2012) Study of various decision tree pruning methods with their empirical comparison in weka. IJCA 60:20–25 Patel N, Upadhyay S (2012) Study of various decision tree pruning methods with their empirical comparison in weka. IJCA 60:20–25
25.
go back to reference Anyanwu M, Shiva S (2009) Comparative analysis of serial decision tree classification algorithms. IJCSS 3(3):230–240 Anyanwu M, Shiva S (2009) Comparative analysis of serial decision tree classification algorithms. IJCSS 3(3):230–240
26.
go back to reference Li XB (2005) A scalable decision tree system and its application in pattern recognition and intrusion detection. Decis Support Syst 41:112–130CrossRef Li XB (2005) A scalable decision tree system and its application in pattern recognition and intrusion detection. Decis Support Syst 41:112–130CrossRef
27.
go back to reference Zekic-Susac M, Pfeifer S, Durdevic I (2010) Classification of entrepreneurial INTENTIONS by neural networks, decision trees and support vector machines. CRORR 1:62–71 Zekic-Susac M, Pfeifer S, Durdevic I (2010) Classification of entrepreneurial INTENTIONS by neural networks, decision trees and support vector machines. CRORR 1:62–71
28.
go back to reference Nock HJ, Gales MJF, Young SJ (1997) A comparative study of methods for phonetic decision-tree state clustering. In: Proceedings of ICASSP, pp 717–720 Nock HJ, Gales MJF, Young SJ (1997) A comparative study of methods for phonetic decision-tree state clustering. In: Proceedings of ICASSP, pp 717–720
30.
go back to reference Banerjee AK, Arora N, Murty USN (2008) Classification and regression tree (CART) analysis for deriving variable importance of parameters influencing average flexibility of CaMK kinase family. Electron J Biol 4(1):27–33 Banerjee AK, Arora N, Murty USN (2008) Classification and regression tree (CART) analysis for deriving variable importance of parameters influencing average flexibility of CaMK kinase family. Electron J Biol 4(1):27–33
31.
go back to reference Stiell IG, Wells GA (1999) Methodologic standards for the development of clinical decision rules in emergency medicine. Ann Emerg Med 33(4):437–447CrossRefPubMed Stiell IG, Wells GA (1999) Methodologic standards for the development of clinical decision rules in emergency medicine. Ann Emerg Med 33(4):437–447CrossRefPubMed
32.
go back to reference Roger J, Lewis MD (2000) An introduction to classification and regression tree (CART) analysis. Annual meeting of the society for academic emergency medicine, pp 1–14 Roger J, Lewis MD (2000) An introduction to classification and regression tree (CART) analysis. Annual meeting of the society for academic emergency medicine, pp 1–14
33.
go back to reference Lewis DM (2004) Forecasting advective sea fog with the use of classification and regression tree analyses for Kunsan air base: Air Force Institute of Technology, Air University Lewis DM (2004) Forecasting advective sea fog with the use of classification and regression tree analyses for Kunsan air base: Air Force Institute of Technology, Air University
34.
go back to reference Takahashi O, Cook E, Nakamura T et al (2006) Risk stratification for in-hospital mortality in spontaneous intracerebral haemorrhage: a classification and regression tree analysis. Q J Med 99:743–750CrossRef Takahashi O, Cook E, Nakamura T et al (2006) Risk stratification for in-hospital mortality in spontaneous intracerebral haemorrhage: a classification and regression tree analysis. Q J Med 99:743–750CrossRef
35.
go back to reference Hautaniemi S, Kharait S, Iwabu A et al (2005) Modeling of signal–response cascades using decision tree analysis. Bioinformatics 21:2027–2035CrossRefPubMed Hautaniemi S, Kharait S, Iwabu A et al (2005) Modeling of signal–response cascades using decision tree analysis. Bioinformatics 21:2027–2035CrossRefPubMed
36.
go back to reference Suner A, Celikoglu CC, Dicle O et al (2012) Sequential decision tree using the analytic hierarchy process for decision support in rectal cancer. Artif Intell Med 56:59–68CrossRefPubMed Suner A, Celikoglu CC, Dicle O et al (2012) Sequential decision tree using the analytic hierarchy process for decision support in rectal cancer. Artif Intell Med 56:59–68CrossRefPubMed
37.
go back to reference Altamirano J, Zapata L, Augustin S et al (2009) Predicting 6-week mortality after acute variceal bleeding: role of classification and regression tree analysis. Ann Hepatol 8:308–315PubMed Altamirano J, Zapata L, Augustin S et al (2009) Predicting 6-week mortality after acute variceal bleeding: role of classification and regression tree analysis. Ann Hepatol 8:308–315PubMed
38.
go back to reference Hong W, Dong L, Jiang Z et al (2011) Prediction of large esophageal varices in cirrhotic patients using classification and regression tree analysis. Clinics 66(1):119–124CrossRefPubMedCentralPubMed Hong W, Dong L, Jiang Z et al (2011) Prediction of large esophageal varices in cirrhotic patients using classification and regression tree analysis. Clinics 66(1):119–124CrossRefPubMedCentralPubMed
40.
go back to reference Rausei S, Dionigi G, Rovera F et al (2012) A decade in gastric cancer curative surgery: evidence of progress (1999–2009). World J Gastrointest Surg 4(3):45–54CrossRefPubMedCentralPubMed Rausei S, Dionigi G, Rovera F et al (2012) A decade in gastric cancer curative surgery: evidence of progress (1999–2009). World J Gastrointest Surg 4(3):45–54CrossRefPubMedCentralPubMed
41.
go back to reference Dracini X, Celiku E, Dibra A et al (2012) Surgical treatment of gastric cancer in Albania. MJMS 5(1):90–93CrossRef Dracini X, Celiku E, Dibra A et al (2012) Surgical treatment of gastric cancer in Albania. MJMS 5(1):90–93CrossRef
44.
go back to reference Moghimi Dehkordi B, Rajaeefard A, Tabatabaee H et al (2007) Modeling survival analysis in gastric cancer patients using the proportional hazards model of Cox. Iran J Epidemiol 3:19–24 Moghimi Dehkordi B, Rajaeefard A, Tabatabaee H et al (2007) Modeling survival analysis in gastric cancer patients using the proportional hazards model of Cox. Iran J Epidemiol 3:19–24
45.
go back to reference Saidi RF, Bell JL, Dudrick PS (2004) Surgical resection for gastric cancer in elderly patients: is there a difference in outcome? J Surg Res 118:15–20CrossRefPubMed Saidi RF, Bell JL, Dudrick PS (2004) Surgical resection for gastric cancer in elderly patients: is there a difference in outcome? J Surg Res 118:15–20CrossRefPubMed
46.
go back to reference Siewert JR, Bottcher K, Stein HJ et al (1998) Relevant prognostic factors in gastric cancer: ten-year results of the German Gastric Cancer Study. Ann Surg 228:449–461CrossRefPubMedCentralPubMed Siewert JR, Bottcher K, Stein HJ et al (1998) Relevant prognostic factors in gastric cancer: ten-year results of the German Gastric Cancer Study. Ann Surg 228:449–461CrossRefPubMedCentralPubMed
47.
go back to reference Yokota T, Kunii Y, Teshima S et al (2000) Significant prognostic factors in patients with early gastric cancer. Int Surg 85:286–290PubMed Yokota T, Kunii Y, Teshima S et al (2000) Significant prognostic factors in patients with early gastric cancer. Int Surg 85:286–290PubMed
48.
go back to reference Kim MK, Sasaki S, Sasazuki S et al (2004) Japan Public Health Center-based prospective study group, prospective study of three major dietary patterns and risk of gastric cancer in Japan. Int J Cancer 110:435–442CrossRefPubMed Kim MK, Sasaki S, Sasazuki S et al (2004) Japan Public Health Center-based prospective study group, prospective study of three major dietary patterns and risk of gastric cancer in Japan. Int J Cancer 110:435–442CrossRefPubMed
49.
go back to reference Nouraie M, Pietinen P, Kamangar F et al (2005) Fruits, vegetables, and antioxidants and risk of gastric cancer among male smokers. Cancer Epidemiol Biomark Prev 14:2087–2092CrossRef Nouraie M, Pietinen P, Kamangar F et al (2005) Fruits, vegetables, and antioxidants and risk of gastric cancer among male smokers. Cancer Epidemiol Biomark Prev 14:2087–2092CrossRef
50.
go back to reference Bashash M, Hislop T, Shah A et al (2011) The prognostic effect of ethnicity for gastric and esophageal cancer: the population-based experience in British Columbia, Canada. BMC Cancer 11:1–8CrossRef Bashash M, Hislop T, Shah A et al (2011) The prognostic effect of ethnicity for gastric and esophageal cancer: the population-based experience in British Columbia, Canada. BMC Cancer 11:1–8CrossRef
51.
go back to reference Everatt R, Tamosiunas A, Kuzmickiene I et al (2012) Alcohol consumption and risk of gastric cancer: a cohort study of men in Kaunas, Lithuania, with up to 30 years follow-up. BMC Cancer 12:1–11CrossRef Everatt R, Tamosiunas A, Kuzmickiene I et al (2012) Alcohol consumption and risk of gastric cancer: a cohort study of men in Kaunas, Lithuania, with up to 30 years follow-up. BMC Cancer 12:1–11CrossRef
53.
go back to reference Freedman ND, Abnet CC, Leitzmann MF et al (2007) A prospective study of tobacco, alcohol, and the risk of esophageal and gastric cancer subtypes. Am J Epidemiol 165(12):1424–1433CrossRefPubMed Freedman ND, Abnet CC, Leitzmann MF et al (2007) A prospective study of tobacco, alcohol, and the risk of esophageal and gastric cancer subtypes. Am J Epidemiol 165(12):1424–1433CrossRefPubMed
54.
go back to reference Larsson SC, Giovannucci E, Wolk A (2007) Alcoholic beverage consumption and gastric cancer risk: a prospective population-based study in women. Int J Cancer 120(2):373–377CrossRefPubMed Larsson SC, Giovannucci E, Wolk A (2007) Alcoholic beverage consumption and gastric cancer risk: a prospective population-based study in women. Int J Cancer 120(2):373–377CrossRefPubMed
55.
go back to reference Razavi S, Salamati P, Saghafinia M et al (2012) A review on delayed toxic effects of sulfur mustard in Iranian veterans. DARU J Pharm Sci 20:1–8CrossRef Razavi S, Salamati P, Saghafinia M et al (2012) A review on delayed toxic effects of sulfur mustard in Iranian veterans. DARU J Pharm Sci 20:1–8CrossRef
56.
go back to reference Ghanei M, Vosoghi A (2002) An epidemiologic study to screen for chronic myelocytic leukemia in war victims exposed to mustard gas. Environ Health Perspect 110(5):519–521CrossRefPubMedCentralPubMed Ghanei M, Vosoghi A (2002) An epidemiologic study to screen for chronic myelocytic leukemia in war victims exposed to mustard gas. Environ Health Perspect 110(5):519–521CrossRefPubMedCentralPubMed
57.
go back to reference Shikata K, Doi Y, Yonemoto K et al (2008) Population-based prospective study of the combined influence of cigarette smoking and Helicobacter pylori infection on gastric cancer incidence: the Hisayama Study. Am J Epidemiol 168(12):1409–1415. doi:10.1093/aje/kwn276 Shikata K, Doi Y, Yonemoto K et al (2008) Population-based prospective study of the combined influence of cigarette smoking and Helicobacter pylori infection on gastric cancer incidence: the Hisayama Study. Am J Epidemiol 168(12):1409–1415. doi:10.​1093/​aje/​kwn276
58.
go back to reference Sjodahl K, Lu Y, Nilsen TI et al (2007) Smoking and alcohol drinking in relation to risk of gastric cancer: a population-based, prospective cohort study. Int J Cancer 120(1):128–132CrossRefPubMed Sjodahl K, Lu Y, Nilsen TI et al (2007) Smoking and alcohol drinking in relation to risk of gastric cancer: a population-based, prospective cohort study. Int J Cancer 120(1):128–132CrossRefPubMed
Metadata
Title
Predicting the probability of mortality of gastric cancer patients using decision tree
Authors
F. Mohammadzadeh
H. Noorkojuri
M. A. Pourhoseingholi
S. Saadat
A. R. Baghestani
Publication date
01-06-2015
Publisher
Springer London
Published in
Irish Journal of Medical Science (1971 -) / Issue 2/2015
Print ISSN: 0021-1265
Electronic ISSN: 1863-4362
DOI
https://doi.org/10.1007/s11845-014-1100-9

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