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Published in: International Journal of Legal Medicine 4/2016

01-07-2016 | Original Article

Post-mortem whole-exome sequencing (WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death (SUD) cases

Authors: Jacqueline Neubauer, Cordula Haas, Christine Bartsch, Argelia Medeiros-Domingo, Wolfgang Berger

Published in: International Journal of Legal Medicine | Issue 4/2016

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Abstract

Sudden death of healthy young adults in the absence of any medical reason is generally categorised as autopsy-negative sudden unexplained death (SUD). Approximately 30 % of all SUD cases can be explained by lethal sequence variants in cardiac genes causing disturbed ion channel functions (channelopathies) or minimal structural heart abnormalities (cardiomyopathies). The aim of this study was to perform whole-exome sequencing (WES) in five young SUD cases in order to identify potentially disease-causing mutations with a focus on 184 genes associated with cardiac diseases or sudden death. WES analysis enabled the identification of damaging-predicted cardiac sequence alterations in three out of five SUD cases. Two SUD victims carried disease-causing variants in long QT syndrome (LQTS)-associated genes (KCNH2, SCN5A). In a third case, WES identified variants in two genes involved in mitral valve prolapse and thoracic aortic aneurism (DCHS1, TGFβ2). The genome of a fourth case carried several minor variants involved in arrhythmia pointing to a multigene influence that might have contributed to sudden death. Our results confirm that post-mortem genetic testing in SUD cases in addition to the conventional autopsy can help to identify familial cardiac diseases and can contribute to the identification of genetic risk factors for sudden death.
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Literature
3.
go back to reference Ackerman MJ, Priori SG, Willems S, Berul C, Brugada R, Calkins H, Camm AJ, Ellinor PT, Gollob M, Hamilton R, Hershberger RE, Judge DP, Le Marec H, McKenna WJ, Schulze-Bahr E, Semsarian C, Towbin JA, Watkins H, Wilde A, Wolpert C, Zipes DP, Heart Rhythm S, European Heart Rhythm A (2011) HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies: this document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA). Heart Rhythm 8:1308–1339. doi:10.1093/europace/eur245 CrossRefPubMed Ackerman MJ, Priori SG, Willems S, Berul C, Brugada R, Calkins H, Camm AJ, Ellinor PT, Gollob M, Hamilton R, Hershberger RE, Judge DP, Le Marec H, McKenna WJ, Schulze-Bahr E, Semsarian C, Towbin JA, Watkins H, Wilde A, Wolpert C, Zipes DP, Heart Rhythm S, European Heart Rhythm A (2011) HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies: this document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA). Heart Rhythm 8:1308–1339. doi:10.​1093/​europace/​eur245 CrossRefPubMed
5.
go back to reference Virmani R, Burke AP, Farb A (2001) Sudden cardiac death. Cardiovasc Pathol 10:1039–1044CrossRef Virmani R, Burke AP, Farb A (2001) Sudden cardiac death. Cardiovasc Pathol 10:1039–1044CrossRef
6.
go back to reference Hofer F, Fellmann F, Schläpfer J, Michaud K (2014) Sudden cardiac death in the young (5–39 years) in the canton of Vaud, Switzerland. Cardiovasc Disord 14:1471–2261 Hofer F, Fellmann F, Schläpfer J, Michaud K (2014) Sudden cardiac death in the young (5–39 years) in the canton of Vaud, Switzerland. Cardiovasc Disord 14:1471–2261
8.
go back to reference Narula N, Tester DJ, Paulmichl A, Maleszewski JJ, Ackerman MJ (2014) Post-mortem whole exome sequencing with gene-specific analysis for autopsy-negative sudden unexplained death in the young: a case series. Pediatr Cardiol. doi:10.1007/s00246-014-1082-4 Narula N, Tester DJ, Paulmichl A, Maleszewski JJ, Ackerman MJ (2014) Post-mortem whole exome sequencing with gene-specific analysis for autopsy-negative sudden unexplained death in the young: a case series. Pediatr Cardiol. doi:10.​1007/​s00246-014-1082-4
10.
go back to reference Elliott P, Andersson B, Arbustini E, Bilinska Z, Cecchi F, Charron P, Dubourg O, Kühl U, Maisch B, McKenna WJ, Moserrat L, Pankuweit S, Rapezzi C, Seferovic P, Tavazzi L, Keren A (2008) Classification of the cardiomyopathies: a position statement from the European Society of Cardiology Working Group on Myocardial and Pericardial Diseases. Eur Heart J 29:270–276. doi:10.1093/eurheartj/ehm342, 10.1093/eurheartj/ehm585 Elliott P, Andersson B, Arbustini E, Bilinska Z, Cecchi F, Charron P, Dubourg O, Kühl U, Maisch B, McKenna WJ, Moserrat L, Pankuweit S, Rapezzi C, Seferovic P, Tavazzi L, Keren A (2008) Classification of the cardiomyopathies: a position statement from the European Society of Cardiology Working Group on Myocardial and Pericardial Diseases. Eur Heart J 29:270–276. doi:10.​1093/​eurheartj/​ehm342, 10.​1093/​eurheartj/​ehm585
11.
go back to reference Campuzano O, Alcalde M, Berne P, Castro V, Guzzo G, Iglesias A, Alonso-Pulpon L, Garcia-Pavia P, Brugada J, Brugada R (2012) Genetic testing of candidate genes in arrhythmogenic right ventricular cardiomyopathy/dysplasia. Eur J Med Genet 55:225–234. doi:10.1016/j.ejmg.2012.02.007 CrossRefPubMed Campuzano O, Alcalde M, Berne P, Castro V, Guzzo G, Iglesias A, Alonso-Pulpon L, Garcia-Pavia P, Brugada J, Brugada R (2012) Genetic testing of candidate genes in arrhythmogenic right ventricular cardiomyopathy/dysplasia. Eur J Med Genet 55:225–234. doi:10.​1016/​j.​ejmg.​2012.​02.​007 CrossRefPubMed
12.
go back to reference Loporcaro CG, Tester DJ, Maleszewski JJ, Kruisselbrink T, Ackerman MJ (2013) Confirmation of cause and manner of death via a comprehensive cardiac autopsy including whole exome next-generation sequencing. Arch Pathol Lab Med 138:1083–1089. doi:10.5858/arpa.2013-0479-SA CrossRefPubMed Loporcaro CG, Tester DJ, Maleszewski JJ, Kruisselbrink T, Ackerman MJ (2013) Confirmation of cause and manner of death via a comprehensive cardiac autopsy including whole exome next-generation sequencing. Arch Pathol Lab Med 138:1083–1089. doi:10.​5858/​arpa.​2013-0479-SA CrossRefPubMed
13.
go back to reference Campuzano O, Sanchez-Molero O, Allegue C, Coll M, Mademont-Soler I, Selga E, Ferrer-Costa C, Mates J, Iglesias A, Sarquella-Brugada G, Cesar S, Brugada J, Castella J, Medallo J, Brugada R (2014) Post-mortem genetic analysis in juvenile cases of sudden cardiac death. Forensic Sci Int 245C:30–37. doi:10.1016/j.forsciint.2014.10.004 CrossRef Campuzano O, Sanchez-Molero O, Allegue C, Coll M, Mademont-Soler I, Selga E, Ferrer-Costa C, Mates J, Iglesias A, Sarquella-Brugada G, Cesar S, Brugada J, Castella J, Medallo J, Brugada R (2014) Post-mortem genetic analysis in juvenile cases of sudden cardiac death. Forensic Sci Int 245C:30–37. doi:10.​1016/​j.​forsciint.​2014.​10.​004 CrossRef
14.
go back to reference Ng SB, Buckingham KJ, Lee C, Bigham AW, Tabor HK, Dent KM, Huff CD, Shannon PT, Jabs EW, Nickerson DA, Shendure J, Bamshad MJ (2010) Exome sequencing identifies the cause of a Mendelian disorder. Nat Genet 42:30–35. doi:10.1038/ng.499 CrossRefPubMed Ng SB, Buckingham KJ, Lee C, Bigham AW, Tabor HK, Dent KM, Huff CD, Shannon PT, Jabs EW, Nickerson DA, Shendure J, Bamshad MJ (2010) Exome sequencing identifies the cause of a Mendelian disorder. Nat Genet 42:30–35. doi:10.​1038/​ng.​499 CrossRefPubMed
15.
go back to reference Hertz CL, Christiansen SL, Ferrero-Miliani L, Fordyce SL, Dahl M, Holst AG, Ottesen GL, Frank-Hansen R, Bundgaard H, Morling N (2015) Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases. Int J Legal Med 129:793–800. doi:10.1007/s00414-014-1105-y CrossRefPubMed Hertz CL, Christiansen SL, Ferrero-Miliani L, Fordyce SL, Dahl M, Holst AG, Ottesen GL, Frank-Hansen R, Bundgaard H, Morling N (2015) Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases. Int J Legal Med 129:793–800. doi:10.​1007/​s00414-014-1105-y CrossRefPubMed
17.
go back to reference Stattin EL, Westin IM, Cederquist K, Jonasson J, Jonsson BA, Morner S, Norberg A, Krantz P, Wisten A (2015) Genetic screening in sudden cardiac death in the young can save future lives. Int J Legal Med. doi:10.1007/s00414-015-1237-8 Stattin EL, Westin IM, Cederquist K, Jonasson J, Jonsson BA, Morner S, Norberg A, Krantz P, Wisten A (2015) Genetic screening in sudden cardiac death in the young can save future lives. Int J Legal Med. doi:10.​1007/​s00414-015-1237-8
18.
go back to reference Haghighi A, Tiwari A, Piri N, Nurnberg G, Saleh-Gohari N, Haghighi A, Neidhardt J, Nurnberg P, Berger W (2014) Homozygosity mapping and whole exome sequencing reveal a novel homozygous COL18A1 mutation causing Knobloch syndrome. PLoS One 9, e112747. doi:10.1371/journal.pone.0112747 Haghighi A, Tiwari A, Piri N, Nurnberg G, Saleh-Gohari N, Haghighi A, Neidhardt J, Nurnberg P, Berger W (2014) Homozygosity mapping and whole exome sequencing reveal a novel homozygous COL18A1 mutation causing Knobloch syndrome. PLoS One 9, e112747. doi:10.​1371/​journal.​pone.​0112747
20.
go back to reference Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing S (2009) The sequence alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. doi:10.1093/bioinformatics/btp352 CrossRef Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing S (2009) The sequence alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. doi:10.​1093/​bioinformatics/​btp352 CrossRef
21.
go back to reference Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38, e164. doi:10.1093/nar/gkq603 Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38, e164. doi:10.​1093/​nar/​gkq603
22.
go back to reference Attanasio C, David A, Neerman-Arbez M (2003) Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA). Blood 101:1851–1856. doi:10.1182/blood-2002-03-0853 CrossRefPubMed Attanasio C, David A, Neerman-Arbez M (2003) Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA). Blood 101:1851–1856. doi:10.​1182/​blood-2002-03-0853 CrossRefPubMed
23.
go back to reference Zeek PM (1942) Heart weight I. The weight of the normal human heart. Arch Pathol 34:820–832 Zeek PM (1942) Heart weight I. The weight of the normal human heart. Arch Pathol 34:820–832
26.
go back to reference Boileau C, Guo DC, Hanna N, Regalado ES, Detaint D, Gong L, Varret M, Prakash SK, Li AH, d’Indy H, Braverman AC, Grandchamp B, Kwartler CS, Gouya L, Santos-Cortez RL, Abifadel M, Leal SM, Muti C, Shendure J, Gross MS, Rieder MJ, Vahanian A, Nickerson DA, Michel JB, National Heart L, Blood Institute Go Exome Sequencing P, Jondeau G, Milewicz DM (2012) TGFB2 mutations cause familial thoracic aortic aneurysms and dissections associated with mild systemic features of Marfan syndrome. Nat Genet 44:916–921. doi:10.1038/ng.2348 CrossRefPubMedPubMedCentral Boileau C, Guo DC, Hanna N, Regalado ES, Detaint D, Gong L, Varret M, Prakash SK, Li AH, d’Indy H, Braverman AC, Grandchamp B, Kwartler CS, Gouya L, Santos-Cortez RL, Abifadel M, Leal SM, Muti C, Shendure J, Gross MS, Rieder MJ, Vahanian A, Nickerson DA, Michel JB, National Heart L, Blood Institute Go Exome Sequencing P, Jondeau G, Milewicz DM (2012) TGFB2 mutations cause familial thoracic aortic aneurysms and dissections associated with mild systemic features of Marfan syndrome. Nat Genet 44:916–921. doi:10.​1038/​ng.​2348 CrossRefPubMedPubMedCentral
28.
go back to reference Gollob MH, Jones DL, Krahn AD, Danis L, Gong X-Q, Shao Q, Lui X, Veinot JP, Tang AS, Stewart AW, Tesson F, Klein GJ, Yee R, Skanes AC, Guiraudon GM, Ebihara L, Bai D (2006) Somatic mutations in the connexin 40 gene (GJA5) in atrial fibrillation. N Engl J Med 354:2677–2688CrossRefPubMed Gollob MH, Jones DL, Krahn AD, Danis L, Gong X-Q, Shao Q, Lui X, Veinot JP, Tang AS, Stewart AW, Tesson F, Klein GJ, Yee R, Skanes AC, Guiraudon GM, Ebihara L, Bai D (2006) Somatic mutations in the connexin 40 gene (GJA5) in atrial fibrillation. N Engl J Med 354:2677–2688CrossRefPubMed
29.
go back to reference Takeshima H, Komazaki S, Nishi M, Iino M, Kangawa K (2000) Junctophilins: a novel family of junctional membrane complex proteins. Mol Cell 6:11–22PubMed Takeshima H, Komazaki S, Nishi M, Iino M, Kangawa K (2000) Junctophilins: a novel family of junctional membrane complex proteins. Mol Cell 6:11–22PubMed
30.
go back to reference Beavers DL, Wang W, Ather S, Voigt N, Garbino A, Dixit SS, Landstrom AP, Li N, Wang Q, Olivotto I, Dobrev D, Ackerman MJ, Wehrens XH (2013) Mutation E169K in junctophilin-2 causes atrial fibrillation due to impaired RyR2 stabilization. J Am Coll Cardiol 62:2010–2019. doi:10.1016/j.jacc.2013.06.052 CrossRefPubMed Beavers DL, Wang W, Ather S, Voigt N, Garbino A, Dixit SS, Landstrom AP, Li N, Wang Q, Olivotto I, Dobrev D, Ackerman MJ, Wehrens XH (2013) Mutation E169K in junctophilin-2 causes atrial fibrillation due to impaired RyR2 stabilization. J Am Coll Cardiol 62:2010–2019. doi:10.​1016/​j.​jacc.​2013.​06.​052 CrossRefPubMed
31.
go back to reference Olesen MS, Jensen NF, Holst AG, Nielsen JB, Tfelt-Hansen J, Jespersen T, Sajadieh A, Haunso S, Lund JT, Calloe K, Schmitt N, Svendsen JH (2011) A novel nonsense variant in Nav1.5 cofactor MOG1 eliminates its sodium current increasing effect and may increase the risk of arrhythmias. Can J Cardiol 27(523):e517–523. doi:10.1016/j.cjca.2011.01.003 Olesen MS, Jensen NF, Holst AG, Nielsen JB, Tfelt-Hansen J, Jespersen T, Sajadieh A, Haunso S, Lund JT, Calloe K, Schmitt N, Svendsen JH (2011) A novel nonsense variant in Nav1.5 cofactor MOG1 eliminates its sodium current increasing effect and may increase the risk of arrhythmias. Can J Cardiol 27(523):e517–523. doi:10.​1016/​j.​cjca.​2011.​01.​003
32.
go back to reference Wu L, Yong SL, Fan C, Ni Y, Yoo S, Zhang T, Zhang X, Obejero-Paz CA, Rho HJ, Ke T, Szafranski P, Jones SW, Chen Q, Wang QK (2008) Identification of a new co-factor, MOG1, required for the full function of cardiac sodium channel Nav 1.5. J Biol Chem 283:6968–6978. doi:10.1074/jbc.M709721200 CrossRefPubMed Wu L, Yong SL, Fan C, Ni Y, Yoo S, Zhang T, Zhang X, Obejero-Paz CA, Rho HJ, Ke T, Szafranski P, Jones SW, Chen Q, Wang QK (2008) Identification of a new co-factor, MOG1, required for the full function of cardiac sodium channel Nav 1.5. J Biol Chem 283:6968–6978. doi:10.​1074/​jbc.​M709721200 CrossRefPubMed
33.
35.
go back to reference Lin NC, Huang CL, Chen CY, Lin TY, Wang HY, Lu YH, Chen LM, Chen VC, Gossop M (2014) Effect of amphetamine on corrected-QT interval change during methadone maintenance treatment in Taiwan: a prospective cohort study. Drug Alcohol Rev 33:194–201. doi:10.1111/dar.12099 CrossRefPubMed Lin NC, Huang CL, Chen CY, Lin TY, Wang HY, Lu YH, Chen LM, Chen VC, Gossop M (2014) Effect of amphetamine on corrected-QT interval change during methadone maintenance treatment in Taiwan: a prospective cohort study. Drug Alcohol Rev 33:194–201. doi:10.​1111/​dar.​12099 CrossRefPubMed
37.
go back to reference Crotti L, Hu D, Barajas-Martinez H, De Ferrari GM, Oliva A, Insolia R, Pollevick GD, Dagradi F, Guerchicoff A, Greco F, Schwartz PJ, Viskin S, Antzelevitch C (2012) Torsades de pointes following acute myocardial infarction: evidence for a deadly link with a common genetic variant. Heart Rhythm 9:1104–1112. doi:10.1016/j.hrthm.2012.02.014 CrossRefPubMedPubMedCentral Crotti L, Hu D, Barajas-Martinez H, De Ferrari GM, Oliva A, Insolia R, Pollevick GD, Dagradi F, Guerchicoff A, Greco F, Schwartz PJ, Viskin S, Antzelevitch C (2012) Torsades de pointes following acute myocardial infarction: evidence for a deadly link with a common genetic variant. Heart Rhythm 9:1104–1112. doi:10.​1016/​j.​hrthm.​2012.​02.​014 CrossRefPubMedPubMedCentral
38.
39.
go back to reference Kato K, Makiyama T, Wu J, Ding WG, Kimura H, Naiki N, Ohno S, Itoh H, Nakanishi T, Matsuura H, Horie M (2014) Cardiac channelopathies associated with infantile fatal ventricular arrhythmias: from the cradle to the bench. J Cardiovasc Electrophysiol 25:66–73. doi:10.1111/jce.12270 CrossRefPubMed Kato K, Makiyama T, Wu J, Ding WG, Kimura H, Naiki N, Ohno S, Itoh H, Nakanishi T, Matsuura H, Horie M (2014) Cardiac channelopathies associated with infantile fatal ventricular arrhythmias: from the cradle to the bench. J Cardiovasc Electrophysiol 25:66–73. doi:10.​1111/​jce.​12270 CrossRefPubMed
40.
go back to reference Horigome H, Nagashima M, Sumitomo N, Yoshinaga M, Ushinohama H, Iwamoto M, Shiono J, Ichihashi K, Hasegawa S, Yoshikawa T, Matsunaga T, Goto H, Waki K, Arima M, Takasugi H, Tanaka Y, Tauchi N, Ikoma M, Inamura N, Takahashi H, Shimizu W, Horie M (2010) Clinical characteristics and genetic background of congenital long-QT syndrome diagnosed in fetal, neonatal, and infantile life: a nationwide questionnaire survey in Japan. Circ Arrhythm Electrophysiol 3:10–17. doi:10.1161/CIRCEP.109.882159 CrossRefPubMed Horigome H, Nagashima M, Sumitomo N, Yoshinaga M, Ushinohama H, Iwamoto M, Shiono J, Ichihashi K, Hasegawa S, Yoshikawa T, Matsunaga T, Goto H, Waki K, Arima M, Takasugi H, Tanaka Y, Tauchi N, Ikoma M, Inamura N, Takahashi H, Shimizu W, Horie M (2010) Clinical characteristics and genetic background of congenital long-QT syndrome diagnosed in fetal, neonatal, and infantile life: a nationwide questionnaire survey in Japan. Circ Arrhythm Electrophysiol 3:10–17. doi:10.​1161/​CIRCEP.​109.​882159 CrossRefPubMed
45.
go back to reference Stitziel NO, Kiezun A, Sunyaev S (2011) Computational and statistical approaches to analyzing variants identified by exome sequencing. Genome Biol 12. doi:10.1186/gb-2011-12-9-227 Stitziel NO, Kiezun A, Sunyaev S (2011) Computational and statistical approaches to analyzing variants identified by exome sequencing. Genome Biol 12. doi:10.​1186/​gb-2011-12-9-227
48.
go back to reference Michaud K, Fellmann F, Abriel H, Beckmann JS, Mangin P, Elger BS (2009) Molecular autopsy in sudden cardiac death and its implication for families: discussion of the practical, legal and ethical aspects of the multidisciplinary collaboration. Swiss Med Wkly 139:712–718PubMed Michaud K, Fellmann F, Abriel H, Beckmann JS, Mangin P, Elger BS (2009) Molecular autopsy in sudden cardiac death and its implication for families: discussion of the practical, legal and ethical aspects of the multidisciplinary collaboration. Swiss Med Wkly 139:712–718PubMed
Metadata
Title
Post-mortem whole-exome sequencing (WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death (SUD) cases
Authors
Jacqueline Neubauer
Cordula Haas
Christine Bartsch
Argelia Medeiros-Domingo
Wolfgang Berger
Publication date
01-07-2016
Publisher
Springer Berlin Heidelberg
Published in
International Journal of Legal Medicine / Issue 4/2016
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-016-1317-4

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