Skip to main content
Top
Published in: Archives of Virology 6/2014

01-06-2014 | Brief Report

Mutational analysis of two highly conserved motifs in the silencing suppressor encoded by tomato spotted wilt virus (genus Tospovirus, family Bunyaviridae)

Authors: Ying Zhai, Sudeep Bag, Neena Mitter, Massimo Turina, Hanu R. Pappu

Published in: Archives of Virology | Issue 6/2014

Login to get access

Abstract

Tospoviruses cause serious economic losses to a wide range of field and horticultural crops on a global scale. The NSs gene encoded by tospoviruses acts as a suppressor of host plant defense. We identified amino acid motifs that are conserved in all of the NSs proteins of tospoviruses for which the sequence is known. Using tomato spotted wilt virus (TSWV) as a model, the role of these motifs in suppressor activity of NSs was investigated. Using site-directed point mutations in two conserved motifs, glycine, lysine and valine/threonine (GKV/T) at positions 181-183 and tyrosine and leucine (YL) at positions 412-413, and an assay to measure the reversal of gene silencing in Nicotiana benthamiana line 16c, we show that substitutions (K182 to A, and L413 to A) in these motifs abolished suppressor activity of the NSs protein, indicating that these two motifs are essential for the RNAi suppressor function of tospoviruses.
Appendix
Available only for authorised users
Literature
1.
go back to reference Adkins S (2000) Tomato spotted wilt virus-positive steps towards negative success. Mol Plant Pathol 1:151–157PubMedCrossRef Adkins S (2000) Tomato spotted wilt virus-positive steps towards negative success. Mol Plant Pathol 1:151–157PubMedCrossRef
2.
go back to reference Bag S, Mitter N, Eid S, Pappu HR (2012) Genetic complementation between two tospoviruses facilitates the systemic movement of a plant virus silencing suppressor in an otherwise restrictive host. PLoS One 7:e44803PubMedCentralPubMedCrossRef Bag S, Mitter N, Eid S, Pappu HR (2012) Genetic complementation between two tospoviruses facilitates the systemic movement of a plant virus silencing suppressor in an otherwise restrictive host. PLoS One 7:e44803PubMedCentralPubMedCrossRef
3.
go back to reference Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363–366PubMedCrossRef Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363–366PubMedCrossRef
4.
5.
go back to reference Cheng HW, Chen KC, Raja JAJ, Li JX, Yen SD (2013) An efficient tag derived from the common epitope of tospoviral NSs proteins for monitoring recombinant proteins expressed in both bacterial and plant systems. J Biotechnol 164:510–519PubMedCrossRef Cheng HW, Chen KC, Raja JAJ, Li JX, Yen SD (2013) An efficient tag derived from the common epitope of tospoviral NSs proteins for monitoring recombinant proteins expressed in both bacterial and plant systems. J Biotechnol 164:510–519PubMedCrossRef
6.
go back to reference Cristea IM, Rozjabek H, Molloy KR, Karki S, White LL, Rice CM, Rout MP, Chait BT, MacDonald MR (2010) Host factors associated with the Sindbis virus RNA-dependent RNA polymerase: role for G3BP1 and G3BP2 in virus replication. J Virol 84:6720–6732PubMedCentralPubMedCrossRef Cristea IM, Rozjabek H, Molloy KR, Karki S, White LL, Rice CM, Rout MP, Chait BT, MacDonald MR (2010) Host factors associated with the Sindbis virus RNA-dependent RNA polymerase: role for G3BP1 and G3BP2 in virus replication. J Virol 84:6720–6732PubMedCentralPubMedCrossRef
7.
go back to reference Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313:68–71PubMedCrossRef Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313:68–71PubMedCrossRef
8.
go back to reference Derry JJ, Richard S, Valderrama Carvajal H, Ye X, Vasioukhin V, Cochrane AW, Chen T, Tyner AL (2000) Sik (BRK) phosphorylates Sam68 in the nucleus and negatively regulates its RNA binding ability. Mol Cell Biol 20:6114–6126PubMedCentralPubMedCrossRef Derry JJ, Richard S, Valderrama Carvajal H, Ye X, Vasioukhin V, Cochrane AW, Chen T, Tyner AL (2000) Sik (BRK) phosphorylates Sam68 in the nucleus and negatively regulates its RNA binding ability. Mol Cell Biol 20:6114–6126PubMedCentralPubMedCrossRef
9.
go back to reference Díaz-Pendon JA, Ding SW (2008) Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu Rev Phytopathol 46:303–326PubMedCrossRef Díaz-Pendon JA, Ding SW (2008) Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu Rev Phytopathol 46:303–326PubMedCrossRef
10.
go back to reference Duan CG, Fang YY, Zhou BJ, Zhao JH, Hou WN, Zhu H, Ding SW, Guo HS (2012) Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein. Plant Cell 24:259–274PubMedCentralPubMedCrossRef Duan CG, Fang YY, Zhou BJ, Zhao JH, Hou WN, Zhu H, Ding SW, Guo HS (2012) Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein. Plant Cell 24:259–274PubMedCentralPubMedCrossRef
11.
go back to reference Gleave AP (1992) A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol Biol 20:1203–1207PubMedCrossRef Gleave AP (1992) A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol Biol 20:1203–1207PubMedCrossRef
12.
go back to reference Goldbach R, Peters D (1996) Molecular and biological aspects of Tospoviruses. In: Elliott RM (ed) The Bunyaviridae. Plenum Press, New York, pp 129–157CrossRef Goldbach R, Peters D (1996) Molecular and biological aspects of Tospoviruses. In: Elliott RM (ed) The Bunyaviridae. Plenum Press, New York, pp 129–157CrossRef
13.
go back to reference Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950–952PubMedCrossRef Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950–952PubMedCrossRef
14.
go back to reference Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu YP, Dolja VV, Calvino LF, López-Moya JJ, Burgyán J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25:2768–2780PubMedCentralPubMedCrossRef Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu YP, Dolja VV, Calvino LF, López-Moya JJ, Burgyán J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25:2768–2780PubMedCentralPubMedCrossRef
15.
go back to reference Lokesh B, Rashmi PR, Amruta BS, Srisathiyanarayanan D, Murthy MR, Savithri HS (2010) NSs encoded by groundnut bud necrosis virus is a bifunctional enzyme. PLoS One 5:e9757PubMedCentralPubMedCrossRef Lokesh B, Rashmi PR, Amruta BS, Srisathiyanarayanan D, Murthy MR, Savithri HS (2010) NSs encoded by groundnut bud necrosis virus is a bifunctional enzyme. PLoS One 5:e9757PubMedCentralPubMedCrossRef
16.
go back to reference Luna AP, Morilla G, Voinnet O, Bejarano ER (2012) Functional analysis of gene-silencing suppressors from tomato yellow leaf curl disease viruses. Mol Plant Microbe Interact 25:1294–1306PubMedCrossRef Luna AP, Morilla G, Voinnet O, Bejarano ER (2012) Functional analysis of gene-silencing suppressors from tomato yellow leaf curl disease viruses. Mol Plant Microbe Interact 25:1294–1306PubMedCrossRef
17.
go back to reference Macdonald A, Mazaleyrat S, McCormick C, Street A, Burgoyne NJ, Jackson RM, Cazeaux V, Shelton H, Saksela K, Harris M (2005) Further studies on hepatitis C virus NS5A-SH3 domain interactions: identification of residues critical for binding and implications for viral RNA replication and modulation of cell signaling. J Gen Virol 86:1035–1044PubMedCrossRef Macdonald A, Mazaleyrat S, McCormick C, Street A, Burgoyne NJ, Jackson RM, Cazeaux V, Shelton H, Saksela K, Harris M (2005) Further studies on hepatitis C virus NS5A-SH3 domain interactions: identification of residues critical for binding and implications for viral RNA replication and modulation of cell signaling. J Gen Virol 86:1035–1044PubMedCrossRef
18.
go back to reference Mandal B, Jain RK, Krishnareddy M, Krishna Kumar NK, Ravi KS, Pappu HR (2012) Emerging problems of Tospoviruses (Bunyaviridae) and their management in the Indian subcontinent. Plant Dis 96:468–479CrossRef Mandal B, Jain RK, Krishnareddy M, Krishna Kumar NK, Ravi KS, Pappu HR (2012) Emerging problems of Tospoviruses (Bunyaviridae) and their management in the Indian subcontinent. Plant Dis 96:468–479CrossRef
19.
go back to reference Margaria P, Ciuffo M, Pacifico D, Turina M (2007) Evidence that the nonstructural protein of Tomato spotted wilt virus is the avirulence determinant in the interaction with resistant pepper carrying the Tsw gene. Mol Plant Microbe Interact 20:547–558PubMedCrossRef Margaria P, Ciuffo M, Pacifico D, Turina M (2007) Evidence that the nonstructural protein of Tomato spotted wilt virus is the avirulence determinant in the interaction with resistant pepper carrying the Tsw gene. Mol Plant Microbe Interact 20:547–558PubMedCrossRef
20.
go back to reference Moyer JW (1999) Tospoviruses (Bunyaviridae). In: Webster R, Granoff A (eds) Encyclopedia of virology. Academic Press, London, pp 1803–1807CrossRef Moyer JW (1999) Tospoviruses (Bunyaviridae). In: Webster R, Granoff A (eds) Encyclopedia of virology. Academic Press, London, pp 1803–1807CrossRef
21.
go back to reference Pappu HR (2008) Tomato spotted wilt virus (Bunyaviridae). In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 133–138CrossRef Pappu HR (2008) Tomato spotted wilt virus (Bunyaviridae). In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 133–138CrossRef
22.
go back to reference Pappu HR, Jones RA, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236PubMedCrossRef Pappu HR, Jones RA, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236PubMedCrossRef
23.
go back to reference Park GS, Morris KL, Hallett RG, Bloom ME, Best SM (2007) Identification of residues critical for the interferon antagonist function of Langat virus NS5 reveals a role for the RNA-dependent RNA polymerase domain. J Virol 81:6936–6946PubMedCentralPubMedCrossRef Park GS, Morris KL, Hallett RG, Bloom ME, Best SM (2007) Identification of residues critical for the interferon antagonist function of Langat virus NS5 reveals a role for the RNA-dependent RNA polymerase domain. J Virol 81:6936–6946PubMedCentralPubMedCrossRef
24.
go back to reference Pfannkuche A, Büther K, Karthe J, Poenisch M, Bartenschlager R, Trilling M, Hengel H, Willbold D, Häussinger D, Bode JG (2011) c-Src is required for complex formation between the hepatitis C virus-encoded proteins NS5A and NS5B: a prerequisite for replication. Hepatology 53:1127–1136PubMedCrossRef Pfannkuche A, Büther K, Karthe J, Poenisch M, Bartenschlager R, Trilling M, Hengel H, Willbold D, Häussinger D, Bode JG (2011) c-Src is required for complex formation between the hepatitis C virus-encoded proteins NS5A and NS5B: a prerequisite for replication. Hepatology 53:1127–1136PubMedCrossRef
25.
go back to reference Qu F, Morris TJ (2002) Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Mol Plant Microbe Interact 15:193–202PubMedCrossRef Qu F, Morris TJ (2002) Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Mol Plant Microbe Interact 15:193–202PubMedCrossRef
27.
go back to reference Scholthof KB, Adkins S, Czosnek H, Palukaitis P, Jacquot E, Hohn T, Hohn B, Saunders K, Candresse T, Ahlquist P, Hemenway C, Foster GD (2011) Top 10 plant viruses in molecular plant pathology. Mol Plant Pathol 9:938–954CrossRef Scholthof KB, Adkins S, Czosnek H, Palukaitis P, Jacquot E, Hohn T, Hohn B, Saunders K, Candresse T, Ahlquist P, Hemenway C, Foster GD (2011) Top 10 plant viruses in molecular plant pathology. Mol Plant Pathol 9:938–954CrossRef
28.
go back to reference Schnettler E, Hemmes H, Huismann R, Goldbach R, Prins M, Kormelink R (2010) Diverging affinity of Tospovirus RNA silencing suppressor proteins, NSs, for various RNA duplex molecules. J Virol 84:11542–11554PubMedCentralPubMedCrossRef Schnettler E, Hemmes H, Huismann R, Goldbach R, Prins M, Kormelink R (2010) Diverging affinity of Tospovirus RNA silencing suppressor proteins, NSs, for various RNA duplex molecules. J Virol 84:11542–11554PubMedCentralPubMedCrossRef
30.
go back to reference Sin S-H, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173PubMedCentralPubMedCrossRef Sin S-H, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173PubMedCentralPubMedCrossRef
31.
go back to reference Taylor SJ, Shalloway D (1994) An RNA-binding protein associated with Src through its SH2 and SH3 domains in mitosis. Nature 368:867–871PubMedCrossRef Taylor SJ, Shalloway D (1994) An RNA-binding protein associated with Src through its SH2 and SH3 domains in mitosis. Nature 368:867–871PubMedCrossRef
32.
go back to reference Takeda A, Sugiyama K, Nagano H, Mori M, Kaido M, Mise K, Tsuda S, Okuno T (2002) Identification of a novel RNA silencing suppressor, NSs protein of Tomato spotted wilt virus. FEBS Lett 532:75–79PubMedCrossRef Takeda A, Sugiyama K, Nagano H, Mori M, Kaido M, Mise K, Tsuda S, Okuno T (2002) Identification of a novel RNA silencing suppressor, NSs protein of Tomato spotted wilt virus. FEBS Lett 532:75–79PubMedCrossRef
33.
go back to reference Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 157–162CrossRef Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 157–162CrossRef
34.
go back to reference Turina M, Tavella L, Ciuffo M (2012) Tospoviruses in the mediterranean area. Adv Virus Res 84:403–437PubMedCrossRef Turina M, Tavella L, Ciuffo M (2012) Tospoviruses in the mediterranean area. Adv Virus Res 84:403–437PubMedCrossRef
35.
go back to reference Ullman DE, Meideros R, Campbell LR, Whitfield AE, Sherwood JL, German TL (2002) Thrips as vectors of tospoviruses. Adv Bot Res 36:113–143CrossRef Ullman DE, Meideros R, Campbell LR, Whitfield AE, Sherwood JL, German TL (2002) Thrips as vectors of tospoviruses. Adv Bot Res 36:113–143CrossRef
36.
go back to reference Vaistij FE, Jones L, Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14:857–867PubMedCentralPubMedCrossRef Vaistij FE, Jones L, Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14:857–867PubMedCentralPubMedCrossRef
37.
go back to reference Vance V, Vaucheret H (2001) RNA silencing in plants—defense and counterdefense. Science 292:2277–2280PubMedCrossRef Vance V, Vaucheret H (2001) RNA silencing in plants—defense and counterdefense. Science 292:2277–2280PubMedCrossRef
38.
go back to reference Whitfield AE, Ullman DE, German TL (2005) Tospovirus–thrips interactions. Annu Rev Phytopathol 43:459–489PubMedCrossRef Whitfield AE, Ullman DE, German TL (2005) Tospovirus–thrips interactions. Annu Rev Phytopathol 43:459–489PubMedCrossRef
Metadata
Title
Mutational analysis of two highly conserved motifs in the silencing suppressor encoded by tomato spotted wilt virus (genus Tospovirus, family Bunyaviridae)
Authors
Ying Zhai
Sudeep Bag
Neena Mitter
Massimo Turina
Hanu R. Pappu
Publication date
01-06-2014
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 6/2014
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1928-8

Other articles of this Issue 6/2014

Archives of Virology 6/2014 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.