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Archives of Virology
Published in: Archives of Virology 6/2019

01-06-2019 | Annotated Sequence Record

Molecular characterization of Morogoro maize-associated virus, a nucleorhabdovirus detected in maize (Zea mays) in Tanzania

Authors: David Alan Read, Jonathan Featherston, David Jasper Gilbert Rees, Genevieve Dawn Thompson, Ronel Roberts, Bradley Charles Flett, Kingstone Mashingaidze, Gerhard Pietersen, Barnabas Kiula, Alois Kullaya, Ernest R. Mbega

Published in: Archives of Virology | Issue 6/2019

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Abstract

RNAtag-seq of maize samples collected in Tanzania revealed the presence of a previously undescribed nucleorhabdovirus, tentatively named “Morogoro maize-associated virus” (MMaV), in three samples. The MMaV genome is 12,185-12,187 nucleotides long and shares a 69-70% nucleotide sequence identity with taro vein chlorosis virus. Annotation of the genomes showed a typical nucleorhabdovirus gene organization. PCR was unable to detect the same virus in the remaining 35 samples collected in the region.
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Literature
1.
2.
Dietzgen RG, Kondo H, Goodin MM, Kurath G, Vasilakis N (2017) The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins. Virus Res. 227:158–170CrossRefPubMed
3.
Jackson AO, Dietzgen RG, Goodin MM, Bragg JN, Deng M (2005) Biology of plant rhabdoviruses. Annu Rev Phytopathol 43:623–660CrossRefPubMed
4.
Reed SE, Tsai CW, Willie KJ, Redinbaugh MG, Hogenhout SA (2005) Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus Maize mosaic virus. J Virol Methods 129:91–96CrossRefPubMed
5.
Massah A, Izadpanah K, Afsharifar AR, Winter S (2008) Analysis of nucleotide sequence of Iranian maize mosaic virus confirms its identity as a distinct nucleorhabdovirus. Arch Virol 153:1041–1047CrossRefPubMed
6.
Redinbaugh MG, Seifers DL, Meulia T, Abt JJ, Anderson RJ, Styer WE, Ackerman J, Salomon R, Houghton W, Creamer R, Gordon DT, Hogenhout SA (2002) Maize fine streak virus, a new leafhopper-transmitted Rhabdovirus. Phytopathology 94:1167–1174CrossRef
7.
Maurino F, Dumón AD, Llauger G, Alemandri V, de Haro LA, Mattio MF, del Vas M, Laguna IG, Pecci MDLP (2018) Complete genome sequence of maize yellow striate virus, a new cytorhabdovirus infecting maize and wheat crops in Argentina. Arch Virol 163:291–295CrossRefPubMed
8.
9.
Read DA, Featherstone J, Rees DJG, Thompson GD, Roberts R, Flett BC, Mashingaidze K, Berger DK, Welgemoed T, Pietersen G, Schulze SE, Kiula B, Kullaya A, Mbega E (2018) First report of maize yellow mosaic virus (MaYMV) on maize (Zea mays) in Tanzania. J. Plant Pathol. https://​doi.​org/​10.​1007/​s42161-018-0152-5 CrossRef
10.
White EJ, Venter M, Hiten NF, Burger JT (2008) Modified cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extraction. Biotechnol J 3:1424–1428CrossRefPubMed
11.
Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J (2015) Simultaneous generation of many RNA-seq libraries in a single reaction. Nat Methods 12:323–325CrossRefPubMedPubMedCentral
12.
13.
Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L (2003) Database resources of the National Center for Biotechnology. Nucleic Acids Res 31:28–33CrossRefPubMedPubMedCentral
14.
la Cour T, Kiemer L, Mølgaard A, Gupta R, Skriver K, Brunak S (2004) Analysis and prediction of leucine-rich nuclear export signals. Protein Eng Des Sel 17(6):527–536CrossRefPubMed
15.
Kosugi S, Hasebe M, Tomita M, Yanagawa H (2009) Systematic identification of yeast cell cycle-dependent nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc Natl Acad Sci USA 106:10171–10176CrossRefPubMedPubMedCentral
16.
Redinbaugh MG, Hogenhout SA (2005) Plant Rhabdoviruses. Curr Top Microbiol Immunol 292:143–163PubMed
17.
Heim F, Lot H, Delecolle B, Bassler A, Krczal G, Wetzel T (2008) Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce. Arch Virol 153:81–92CrossRefPubMed
18.
Revill P, Trinh X, Dale J, Harding R (2005) Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus. J Gen Virol 86:491–499CrossRefPubMed
19.
Dietzgen RG, Innes DJ, Bejerman N (2015) Complete genome sequence and intracellular protein localization of Datura yellow vein nucleorhabdovirus. Virus Res 205:7–11CrossRefPubMed
20.
Martin KM, Dietzgen RG, Wang R, Goodin MM (2012) Lettuce necrotic yellows cytorhabdovirus protein localization and interaction map and comparison with nucleorhabdoviruses. J Gen Virol 93:906–914CrossRefPubMed
Metadata
Title
Molecular characterization of Morogoro maize-associated virus, a nucleorhabdovirus detected in maize (Zea mays) in Tanzania
Authors
David Alan Read
Jonathan Featherston
David Jasper Gilbert Rees
Genevieve Dawn Thompson
Ronel Roberts
Bradley Charles Flett
Kingstone Mashingaidze
Gerhard Pietersen
Barnabas Kiula
Alois Kullaya
Ernest R. Mbega
Publication date
01-06-2019
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 6/2019
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-019-04212-1

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