Top

Published in:

01-11-2018 | Brief Report

Molecular analysis of Newcastle disease virus isolates reveals a novel XIId subgenotype in Vietnam

Authors: Xuyen Thi Kim Le, Huong Thi Thanh Doan, Thanh Hoa Le

Published in: Archives of Virology | Issue 11/2018

Abstract

Eight Vietnamese Newcastle disease virus field isolates from 2008–2015 and 3 vaccine specimens were genotyped based on their full F gene sequences and compared to 80 reference strains representing all 18 genotypes. Three isolates formed a novel subgenotype XIId, identified for the first time in Vietnam; while the others clustered as follows: four in subgenotypes VIId and VIIh; two in Genotype I; and two in Genotype II. Evolutionary distance calculations confirmed the Vietnamese XIId isolates were distinct from XIIa and XIIb by 0.062–0.070; and from other genotypes by 0.089–0.245. This data demonstrated that a novel XIId subgenotype emerged in Vietnam indicating considerable genetic diversity, thus highlighting the need to implement antigenic matching during vaccination against NDVs.

Doyle TM (1927) A hitherto unrecorded disease of fowls due to a filter-passing virus. J Comp Pathol Ther 40:144–169

Cattoli G, Susta L, Terregino C, Brown C (2011) Newcastle disease: a review of field recognition and current methods of laboratory detection. J Vet Diagn Invest 23(4):637–656. https://doi.org/10.1177/1040638711407887 (Review) CrossRefPubMed

Alexander DJ, Aldous EW, Fuller CM (2012) The long view: a selective review of 40 years of Newcastle disease research. Avian Pathol 41(4):329–335. https://doi.org/10.1080/03079457.2012.697991 (Review) CrossRefPubMed

Diel DG, da Silva LH, Liu H, Wang Z, Miller PJ, Afonso CL (2012) Genetic diversity of avian paramyxovirus type 1: proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes. Infect Genet Evol 12(8):1770–1779. https://doi.org/10.1016/j.meegid.2012.07.012 CrossRefPubMed

Miller PJ, Decanini EL, Afonso CL (2010) Newcastle disease: evolution of genotypes and the related diagnostic challenges. Infect Genet Evol 10:26–35. https://doi.org/10.1016/j.meegid.2009.09.012 CrossRefPubMed

Dimitrov KM, Ramey AM, Qiu X, Bahl J, Afonso CL (2016) Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus). Infect Genet Evol 39:22–34. https://doi.org/10.1016/j.meegid.2016.01.008 CrossRefPubMed

Czeglédi A, Ujvári D, Somogyi E, Wehmann E, Werner O, Lomniczi B (2006) Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications. Virus Res 120(1–2):36–48. https://doi.org/10.1016/j.virusres.2005.11.009 CrossRefPubMed

Goldhaft TM (1980) Historical note on the origin of the LaSota strain of Newcastle disease virus. Avian Dis 24(2):297–301CrossRefPubMed

Czeglédi A, Wehmann E, Lomniczi B (2003) On the origins and relationships of Newcastle disease virus vaccine strains Hertfordshire and Mukteswar, and virulent strain Herts’33. Avian Pathol 32(3):271–276. https://doi.org/10.1080/0307945031000097868 CrossRefPubMed

10.

Wen G, Wang M, Wang H, Li L, Luo Q, Zhang T, Cheng G, Shao H (2016) Genome sequence of a virulent genotype III Newcastle disease virus isolated from laying ducks in China. Genome Announc. https://doi.org/10.1128/genomeA.01436-16 CrossRefPubMedPubMedCentral

11.

Lomniczi B, Wehmann E, Herczeg J, Ballagi-Pordány A, Kaleta EF, Werner O, Meulemans G, Jorgensen PH, Manté AP, Gielkens AL, Capua I, Damoser J (1998) Newcastle disease outbreaks in recent years in western Europe were caused by an old (VI) and a novel genotype (VII). Arch Virol 143(1):49–64. https://doi.org/10.1007/s007050050267 CrossRefPubMed

12.

Maminiaina OF, Gil P, Briand FX, Albina E, Keita D, Andriamanivo HR, Chevalier V, Lancelot R, Martinez D, Rakotondravao R, Rajaonarison JJ, Koko M, Andriantsimahavandy AA, Jestin V, Servan de Almeida R (2010) Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV. PLoS One 5(11):e13987. https://doi.org/10.1371/journal.pone.0013987 CrossRefPubMedPubMedCentral

13.

Tsai HJ, Chang KH, Tseng CH, Frost KM, Manvell RJ, Alexander DJ (2004) Antigenic and genotypical characterization of Newcastle disease viruses isolated in Taiwan between 1969 and 1996. Vet Microbiol 104(1–2):19–30. https://doi.org/10.1016/j.vetmic.2004.09.005 CrossRefPubMed

14.

Duan X, Zhang P, Ma J, Chen S, Hao H, Liu H, Fu X, Wu P, Zhang D, Zhang W, Du E, Yang Z (2014) Characterization of genotype IX Newcastle disease virus strains isolated from wild birds in the northern Qinling Mountains, China. Virus Genes 48(1):48–55. https://doi.org/10.1007/s11262-013-0987-y CrossRefPubMed

15.

Chumbe A, Izquierdo-Lara R, Tataje L, Gonzalez R, Cribillero G, González AE, Fernández-Díaz M, Icochea E (2017) Pathotyping and phylogenetic characterization of Newcastle Disease Viruses Isolated in Peru: defining two novel subgenotypes within genotype XII. Avian Dis 61(1):16–24. https://doi.org/10.1637/11456-062016-Reg CrossRefPubMed

16.

Miller PJ, Haddas R, Simanov L, Lublin A, Rehmani SF, Wajid A, Bibi T, Khan TA, Yaqub T, Setiyaningsih S, Afonso CL (2015) Identification of new sub-genotypes of virulent Newcastle disease virus with potential panzootic features. Infect Genet Evol 29:216–229. https://doi.org/10.1016/j.meegid.2014.10.032 CrossRefPubMed

17.

Nath B, Kumar S (2017) Emerging variant of genotype XIII Newcastle disease virus from Northeast India. Acta Trop. 172:64–69. https://doi.org/10.1016/j.actatropica.2017.04.018 CrossRefPubMed

18.

Courtney SC, Susta L, Gomez D, Hines NL, Pedersen JC, Brown CC, Miller PJ, Afonso CL (2013) Highly divergent virulent isolates of Newcastle disease virus from the Dominican Republic are members of a new genotype that may have evolved unnoticed for over 2 decades. J Clin Microbiol 51(2):508–517. https://doi.org/10.1128/JCM.02393-12 CrossRefPubMedPubMedCentral

19.

Snoeck CJ, Owoade AA, Couacy-Hymann E, Alkali BR, Okwen MP, Adeyanju AT, Komoyo GF, Nakouné E, Le Faou A, Muller CP (2013) High genetic diversity of Newcastle disease virus in poultry in West and Central Africa: cocirculation of genotype XIV and newly defined genotypes XVII and XVIII. J Clin Microbiol 51(7):2250–2260. https://doi.org/10.1128/JCM.00684-13 CrossRefPubMedPubMedCentral

20.

Susta L, Jones ME, Cattoli G, Cardenas-Garcia S, Miller PJ, Brown CC, Afonso CL (2015) Pathologic characterization of genotypes XIV and XVII Newcastle disease viruses and efficacy of classical vaccination on specific pathogen-free birds. Vet Pathol 52(1):120–131. https://doi.org/10.1177/0300985814521247 CrossRefPubMed

21.

Xue C, Cong Y, Yin R, Sun Y, Ding C, Yu S, Liu X, Hu S, Qian J, Yuan Q, Yang M, Wang C, Ding Z (2017) Genetic diversity of the genotype VII Newcastle disease virus: identification of a novel VIIj sub-genotype. Virus Genes 53(1):63–70. https://doi.org/10.1007/s11262-016-1404-0 CrossRefPubMed

22.

Molini U, Aikukutu G, Khaiseb S, Cattoli G, Dundon WG (2017) First genetic characterization of newcastle disease viruses from Namibia: identification of a novel VIIk subgenotype. Arch Virol 162(8):2427–2431. https://doi.org/10.1007/s00705-017-3389-y CrossRefPubMed

23.

Esmaelizad M, Mayahi V, Pashaei M, Goudarzi H (2017) Identification of novel Newcastle disease virus sub-genotype VII-(j) based on the fusion protein. Arch Virol 162(4):971–978. https://doi.org/10.1007/s00705-016-3189-9 CrossRefPubMed

24.

Sabouri F, Vasfi Marandi M, Bashashati M (2018) Characterization of a novel VIIl sub-genotype of Newcastle disease virus circulating in Iran. Avian Pathol. 47(1):90–99. https://doi.org/10.1080/03079457.2017.1376735 CrossRefPubMed

25.

Bogoyavlenskiy A, Berezin V, Prilipov A, Usachev E, Lyapina O, Korotetskiy I, Zaitceva I, Asanova S, Kydyrmanov A, Daulbaeva K, Shakhvorostova L, Sayatov M, King D (2009) Newcastle disease outbreaks in Kazakhstan and Kyrgyzstan during 1998, 2000, 2001, 2003, 2004, and 2005 were caused by viruses of the genotypes VIIb and VIId. Virus Genes 39(1):94–101. https://doi.org/10.1007/s11262-009-0370-1 CrossRefPubMed

26.

Aldous EW, Mynn JK, Banks J, Alexander DJ (2003) A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene. Avian Pathol 32(3):239–256. https://doi.org/10.1080/030794503100009783 CrossRefPubMed

27.

Berhanu A, Ideris A, Omar AR, Bejo MH (2010) Molecular characterization of partial fusion gene and C-terminus extension length of haemagglutinin-neuraminidase gene of recently isolated Newcastle disease virus isolates in Malaysia. Virol J 7:183. https://doi.org/10.1186/1743-422X-7-183 CrossRefPubMedPubMedCentral

28.

Netter R, Luong NB (1956) [Research on Newcastle disease in Vietnam. I. Isolation of two strains. II. Serological research in various birds. III. Comparison of several vaccines]. Bull Soc Pathol Exot Filiales 49(1):111–118 (French)

29.

Tu TD, Phuc KV, Dinh NT, Quoc DN, Spradbrow PB (1998) Vietnamese trials with a thermostable Newcastle disease vaccine (strain I2) in experimental and village chickens. Prev Vet Med 34(2–3):205–214. https://doi.org/10.1016/S0167-5877(97)00065-2 CrossRefPubMed

30.

Susta L, Miller PJ, Afonso CL, Brown CC (2011) Clinicopathological characterization in poultry of three strains of Newcastle disease virus isolated from recent outbreaks. Vet Pathol 48(2):349–360. https://doi.org/10.1177/0300985810375806 CrossRefPubMed

31.

Choi KS, Kye SJ, Kim JY, To TL, Nguyen DT, Lee YJ, Choi JG, Kang HM, Kim KI, Song BM, Lee HS (2014) Molecular epidemiology of Newcastle disease viruses in Vietnam. Trop Anim Health Prod 46(1):271–277. https://doi.org/10.1007/s11250-013-0475-3 CrossRefPubMed

32.

Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870–1874. https://doi.org/10.1093/molbev/msw054 CrossRefPubMedPubMedCentral

33.

Liang R, Cao DJ, Li JQ, Chen J, Guo X, Zhuang FF, Duan MX (2002) Newcastle disease outbreaks in western China were caused by the genotypes VIIa and VIII. Vet Microbiol 87(3):193–203. https://doi.org/10.1016/S0378-1135(02)00050-0 CrossRefPubMed

34.

Satharasinghe DA, Murulitharan K, Tan SW, Yeap SK, Munir M, Ideris A, Omar AR (2016) Detection of inter-lineage natural recombination in avian paramyxovirus serotype 1 using simplified deep sequencing platform. Front Microbiol 7:1907. https://doi.org/10.3389/fmicb.2016.01907 CrossRefPubMedPubMedCentral

Title: Molecular analysis of Newcastle disease virus isolates reveals a novel XIId subgenotype in Vietnam
Authors: Xuyen Thi Kim Le
Huong Thi Thanh Doan
Thanh Hoa Le
Publication date: 01-11-2018
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 11/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3961-0

Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Pediatric Cardiology Video

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

Cardiopulmonary Comorbidity Video

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Valvular Heart Disease Video

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

Watch now

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

16-04-2024 Type 2 Diabetes News

Incentivised to exercise

11-04-2024 Lifestyle Modifications News

New intervention for STEMI-related cardiogenic shock

10-04-2024 Myocardial Infarction News

» View more highlights on the ACC 2024 congress hub page

Image Credits

STEP AAG HeroTeaserCollection image/© Tarek / Generated with AI / Stock.adobe.com, ACC 2024 Pediatric and Congenital Heart Disease: Year in Review/© 2024 American College of Cardiology, ACC 2024 Pulmonary Vascular Disease: Year in Review/© 2024 American College of Cardiology, ACC 2024 Valvular Heart Disease: Year in Review/© 2024 American College of Cardiology, ACC 2024 HF and Cardiomyopathies: Year in Review/© 2024 American College of Cardiology, Woman out walking/© Seventyfour / stock.adobe.com (symbolic image with model), Woman checking smartwatch /© saltdium / stock.adobe.com (symbolic image with model), Cardiac catheterization/© Damian / stock.adobe.com

At a glance: The STEP trials

Springer Medicine

Abstract

Please log in to get access to this content

Other articles of this Issue 11/2018

Histamine contributes to severe pneumonia in pigs infected with 2009 pandemic H1N1 influenza virus

Soft-shelled turtle iridovirus enters cells via cholesterol-dependent, clathrin-mediated endocytosis as well as macropinocytosis

Correction to: Full genome sequence of a polyvalent bacteriophage infecting strains of Shigella, Salmonella, and Escherichia

Correction to: Smacoviridae: a new family of animal-associated single-stranded DNA viruses

Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil

Wuhan poty-like virus 1 is a possible member of the genus Macluravirus

Highlights from the ACC 2024 Congress

ACC 2024 Congress Coverage