Skip to main content
Top
Published in: Clinical and Translational Medicine 1/2018

Open Access 01-12-2018 | Review

Lipidomics unveils the complexity of the lipidome in metabolic diseases

Authors: Todd A. Lydic, Young-Hwa Goo

Published in: Clinical and Translational Medicine | Issue 1/2018

Login to get access

Abstract

Dysregulation of lipid metabolism is responsible for pathologies of human diseases including metabolic diseases. Recent advances in lipidomics analysis allow for the targeted and untargeted identification of lipid species and for their quantification in normal and diseased conditions. Herein, this review provides a brief introduction to lipidomics, highlights its application to characterize the lipidome at the cellular and physiological levels under different biological conditions, and discusses the potential for the use of lipidomics in the discovery of biomarkers.
Literature
1.
go back to reference Fahy E, Subramaniam S, Brown HA, Glass CK, Merrill AH Jr, Murphy RC et al (2005) A comprehensive classification system for lipids. J Lipid Res 46(5):839–861CrossRefPubMed Fahy E, Subramaniam S, Brown HA, Glass CK, Merrill AH Jr, Murphy RC et al (2005) A comprehensive classification system for lipids. J Lipid Res 46(5):839–861CrossRefPubMed
4.
go back to reference Plakkal Ayyappan J, Paul A, Goo YH (2016) Lipid droplet-associated proteins in atherosclerosis (Review). Mol Med Rep 13(6):4527–4534CrossRefPubMed Plakkal Ayyappan J, Paul A, Goo YH (2016) Lipid droplet-associated proteins in atherosclerosis (Review). Mol Med Rep 13(6):4527–4534CrossRefPubMed
5.
go back to reference Saliba AE, Vonkova I, Gavin AC (2015) The systematic analysis of protein-lipid interactions comes of age. Nat Rev Mol Cell Biol 16(12):753–761CrossRefPubMed Saliba AE, Vonkova I, Gavin AC (2015) The systematic analysis of protein-lipid interactions comes of age. Nat Rev Mol Cell Biol 16(12):753–761CrossRefPubMed
6.
go back to reference Morita M, Kuba K, Ichikawa A, Nakayama M, Katahira J, Iwamoto R et al (2013) The lipid mediator protectin D1 inhibits influenza virus replication and improves severe influenza. Cell 153(1):112–125CrossRefPubMed Morita M, Kuba K, Ichikawa A, Nakayama M, Katahira J, Iwamoto R et al (2013) The lipid mediator protectin D1 inhibits influenza virus replication and improves severe influenza. Cell 153(1):112–125CrossRefPubMed
7.
go back to reference Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T et al (2009) Update of the LIPID MAPS comprehensive classification system for lipids. J Lipid Res 50(Suppl):S9–S14CrossRefPubMedPubMedCentral Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T et al (2009) Update of the LIPID MAPS comprehensive classification system for lipids. J Lipid Res 50(Suppl):S9–S14CrossRefPubMedPubMedCentral
8.
go back to reference Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37(8):911–917CrossRefPubMed Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37(8):911–917CrossRefPubMed
9.
go back to reference Folch J, Lees M, Sloane-Stanley GH (1957) A simple method for the isolation and purification of total lipides from animal tissues. J Biol Chem 226(1):497–509PubMed Folch J, Lees M, Sloane-Stanley GH (1957) A simple method for the isolation and purification of total lipides from animal tissues. J Biol Chem 226(1):497–509PubMed
10.
go back to reference Reis A, Rudnitskaya A, Blackburn GJ, Fauzi NM, Pitt AR, Spickett CM (2013) A comparison of five lipid extraction solvent systems for lipidomic studies of human LDL. J Lipid Res 54(7):1812–1824CrossRefPubMedPubMedCentral Reis A, Rudnitskaya A, Blackburn GJ, Fauzi NM, Pitt AR, Spickett CM (2013) A comparison of five lipid extraction solvent systems for lipidomic studies of human LDL. J Lipid Res 54(7):1812–1824CrossRefPubMedPubMedCentral
11.
go back to reference Lydic TA, Busik JV, Reid GE (2014) A monophasic extraction strategy for the simultaneous lipidome analysis of polar and nonpolar retina lipids. J Lipid Res 55(8):1797–1809CrossRefPubMedPubMedCentral Lydic TA, Busik JV, Reid GE (2014) A monophasic extraction strategy for the simultaneous lipidome analysis of polar and nonpolar retina lipids. J Lipid Res 55(8):1797–1809CrossRefPubMedPubMedCentral
14.
go back to reference Lindon JC, Nicholson JK (2008) Spectroscopic and statistical techniques for information recovery in metabonomics and metabolomics. Annu Rev Anal Chem (Palo Alto Calif) 1:45–69CrossRef Lindon JC, Nicholson JK (2008) Spectroscopic and statistical techniques for information recovery in metabonomics and metabolomics. Annu Rev Anal Chem (Palo Alto Calif) 1:45–69CrossRef
15.
go back to reference Soininen P, Kangas AJ, Wurtz P, Suna T, Ala-Korpela M (2015) Quantitative serum nuclear magnetic resonance metabolomics in cardiovascular epidemiology and genetics. Circ Cardiovasc Genet 8(1):192–206CrossRefPubMed Soininen P, Kangas AJ, Wurtz P, Suna T, Ala-Korpela M (2015) Quantitative serum nuclear magnetic resonance metabolomics in cardiovascular epidemiology and genetics. Circ Cardiovasc Genet 8(1):192–206CrossRefPubMed
16.
go back to reference Han X, Gross RW (2003) Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics. J Lipid Res 44(6):1071–1079CrossRefPubMed Han X, Gross RW (2003) Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics. J Lipid Res 44(6):1071–1079CrossRefPubMed
17.
go back to reference Duffin KL, Henion JD, Shieh JJ (1991) Electrospray and tandem mass spectrometric characterization of acylglycerol mixtures that are dissolved in nonpolar solvents. Anal Chem 63(17):1781–1788CrossRefPubMed Duffin KL, Henion JD, Shieh JJ (1991) Electrospray and tandem mass spectrometric characterization of acylglycerol mixtures that are dissolved in nonpolar solvents. Anal Chem 63(17):1781–1788CrossRefPubMed
18.
go back to reference Weintraub ST, Pinckard RN, Hail M (1991) Electrospray ionization for analysis of platelet-activating factor. Rapid Commun Mass Spectrom 5(7):309–311CrossRefPubMed Weintraub ST, Pinckard RN, Hail M (1991) Electrospray ionization for analysis of platelet-activating factor. Rapid Commun Mass Spectrom 5(7):309–311CrossRefPubMed
19.
go back to reference Yetukuri L, Ekroos K, Vidal-Puig A, Oresic M (2008) Informatics and computational strategies for the study of lipids. Mol Biosyst 4(2):121–127CrossRefPubMed Yetukuri L, Ekroos K, Vidal-Puig A, Oresic M (2008) Informatics and computational strategies for the study of lipids. Mol Biosyst 4(2):121–127CrossRefPubMed
20.
21.
go back to reference Yanes O, Clark J, Wong DM, Patti GJ, Sanchez-Ruiz A, Benton HP et al (2010) Metabolic oxidation regulates embryonic stem cell differentiation. Nat Chem Biol 6(6):411–417CrossRefPubMedPubMedCentral Yanes O, Clark J, Wong DM, Patti GJ, Sanchez-Ruiz A, Benton HP et al (2010) Metabolic oxidation regulates embryonic stem cell differentiation. Nat Chem Biol 6(6):411–417CrossRefPubMedPubMedCentral
22.
go back to reference Bothwell JH, Griffin JL (2011) An introduction to biological nuclear magnetic resonance spectroscopy. Biol Rev 86(2):493–510CrossRefPubMed Bothwell JH, Griffin JL (2011) An introduction to biological nuclear magnetic resonance spectroscopy. Biol Rev 86(2):493–510CrossRefPubMed
23.
24.
go back to reference Mierisova S, Ala-Korpela M (2001) MR spectroscopy quantitation: a review of frequency domain methods. NMR Biomed 14(4):247–259CrossRefPubMed Mierisova S, Ala-Korpela M (2001) MR spectroscopy quantitation: a review of frequency domain methods. NMR Biomed 14(4):247–259CrossRefPubMed
25.
go back to reference Ala-Korpela M, Hiltunen Y, Bell JD (1995) Quantification of biomedical NMR data using artificial neural network analysis: lipoprotein lipid profiles from 1H NMR data of human plasma. NMR Biomed 8(6):235–244CrossRefPubMed Ala-Korpela M, Hiltunen Y, Bell JD (1995) Quantification of biomedical NMR data using artificial neural network analysis: lipoprotein lipid profiles from 1H NMR data of human plasma. NMR Biomed 8(6):235–244CrossRefPubMed
26.
go back to reference Koivusalo M, Haimi P, Heikinheimo L, Kostiainen R, Somerharju P (2001) Quantitative determination of phospholipid compositions by ESI-MS: effects of acyl chain length, unsaturation, and lipid concentration on instrument response. J Lipid Res 42(4):663–672PubMed Koivusalo M, Haimi P, Heikinheimo L, Kostiainen R, Somerharju P (2001) Quantitative determination of phospholipid compositions by ESI-MS: effects of acyl chain length, unsaturation, and lipid concentration on instrument response. J Lipid Res 42(4):663–672PubMed
27.
go back to reference Lydic TA, Townsend S, Adda CG, Collins C, Mathivanan S, Reid GE (2015) Rapid and comprehensive ‘shotgun’ lipidome profiling of colorectal cancer cell derived exosomes. Methods 87:83–95CrossRefPubMedPubMedCentral Lydic TA, Townsend S, Adda CG, Collins C, Mathivanan S, Reid GE (2015) Rapid and comprehensive ‘shotgun’ lipidome profiling of colorectal cancer cell derived exosomes. Methods 87:83–95CrossRefPubMedPubMedCentral
28.
go back to reference Cech NB, Enke CG (2001) Practical implications of some recent studies in electrospray ionization fundamentals. Mass Spectrom Rev 20(6):362–387CrossRefPubMed Cech NB, Enke CG (2001) Practical implications of some recent studies in electrospray ionization fundamentals. Mass Spectrom Rev 20(6):362–387CrossRefPubMed
29.
go back to reference Yang K, Cheng H, Gross RW, Han X (2009) Automated lipid identification and quantification by multidimensional mass spectrometry-based shotgun lipidomics. Anal Chem 81(11):4356–4368CrossRefPubMedPubMedCentral Yang K, Cheng H, Gross RW, Han X (2009) Automated lipid identification and quantification by multidimensional mass spectrometry-based shotgun lipidomics. Anal Chem 81(11):4356–4368CrossRefPubMedPubMedCentral
30.
go back to reference Foster JM, Moreno P, Fabregat A, Hermjakob H, Steinbeck C, Apweiler R et al (2013) LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics. PLoS ONE 8(5):e61951CrossRefPubMedPubMedCentral Foster JM, Moreno P, Fabregat A, Hermjakob H, Steinbeck C, Apweiler R et al (2013) LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics. PLoS ONE 8(5):e61951CrossRefPubMedPubMedCentral
31.
go back to reference Kind T, Liu KH, Lee DY, DeFelice B, Meissen JK, Fiehn O (2013) LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat Methods 10(8):755–758CrossRefPubMedPubMedCentral Kind T, Liu KH, Lee DY, DeFelice B, Meissen JK, Fiehn O (2013) LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat Methods 10(8):755–758CrossRefPubMedPubMedCentral
32.
go back to reference Goracci L, Tortorella S, Tiberi P, Pellegrino RM, Di Veroli A, Valeri A et al (2017) Lipostar, a comprehensive platform-neutral cheminformatics tool for lipidomics. Anal Chem 89(11):6257–6264CrossRefPubMed Goracci L, Tortorella S, Tiberi P, Pellegrino RM, Di Veroli A, Valeri A et al (2017) Lipostar, a comprehensive platform-neutral cheminformatics tool for lipidomics. Anal Chem 89(11):6257–6264CrossRefPubMed
33.
go back to reference Haimi P, Chaithanya K, Kainu V, Hermansson M, Somerharju P (2009) Instrument-independent software tools for the analysis of MS–MS and LC–MS lipidomics data. Methods Mol Biol 580:285–294PubMed Haimi P, Chaithanya K, Kainu V, Hermansson M, Somerharju P (2009) Instrument-independent software tools for the analysis of MS–MS and LC–MS lipidomics data. Methods Mol Biol 580:285–294PubMed
34.
go back to reference Husen P, Tarasov K, Katafiasz M, Sokol E, Vogt J, Baumgart J et al (2013) Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data. PLoS ONE 8(11):e79736CrossRefPubMedPubMedCentral Husen P, Tarasov K, Katafiasz M, Sokol E, Vogt J, Baumgart J et al (2013) Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data. PLoS ONE 8(11):e79736CrossRefPubMedPubMedCentral
35.
go back to reference Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K et al (2015) MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. Nat Methods 12(6):523–526CrossRefPubMedPubMedCentral Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K et al (2015) MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. Nat Methods 12(6):523–526CrossRefPubMedPubMedCentral
36.
go back to reference Yetukuri L, Katajamaa M, Medina-Gomez G, Seppanen-Laakso T, Vidal-Puig A, Oresic M (2007) Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis. BMC Syst Biol 1:12CrossRefPubMedPubMedCentral Yetukuri L, Katajamaa M, Medina-Gomez G, Seppanen-Laakso T, Vidal-Puig A, Oresic M (2007) Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis. BMC Syst Biol 1:12CrossRefPubMedPubMedCentral
37.
go back to reference Haimi P, Uphoff A, Hermansson M, Somerharju P (2006) Software tools for analysis of mass spectrometric lipidome data. Anal Chem 78(24):8324–8331CrossRefPubMed Haimi P, Uphoff A, Hermansson M, Somerharju P (2006) Software tools for analysis of mass spectrometric lipidome data. Anal Chem 78(24):8324–8331CrossRefPubMed
38.
go back to reference Clasquin MF, Melamud E, Rabinowitz JD (2012) LC-MS data processing with MAVEN: a metabolomic analysis and visualization engine. Curr Protoc Bioinform, Chapter 14:Unit14.1 Clasquin MF, Melamud E, Rabinowitz JD (2012) LC-MS data processing with MAVEN: a metabolomic analysis and visualization engine. Curr Protoc Bioinform, Chapter 14:Unit14.1
39.
go back to reference Kulkarni H, Meikle PJ, Mamtani M, Weir JM, Barlow CK, Jowett JB et al (2013) Plasma lipidomic profile signature of hypertension in Mexican American families: specific role of diacylglycerols. Hypertension 62(3):621–626CrossRefPubMedPubMedCentral Kulkarni H, Meikle PJ, Mamtani M, Weir JM, Barlow CK, Jowett JB et al (2013) Plasma lipidomic profile signature of hypertension in Mexican American families: specific role of diacylglycerols. Hypertension 62(3):621–626CrossRefPubMedPubMedCentral
42.
go back to reference Aviram R, Manella G, Kopelman N, Neufeld-Cohen A, Zwighaft Z, Elimelech M et al (2016) Lipidomics analyses reveal temporal and spatial lipid organization and uncover daily oscillations in intracellular organelles. Mol Cell 62(4):636–648CrossRefPubMed Aviram R, Manella G, Kopelman N, Neufeld-Cohen A, Zwighaft Z, Elimelech M et al (2016) Lipidomics analyses reveal temporal and spatial lipid organization and uncover daily oscillations in intracellular organelles. Mol Cell 62(4):636–648CrossRefPubMed
43.
go back to reference Agmon E, Stockwell BR (2017) Lipid homeostasis and regulated cell death. Curr Opin Chem Biol 39:83–89CrossRefPubMed Agmon E, Stockwell BR (2017) Lipid homeostasis and regulated cell death. Curr Opin Chem Biol 39:83–89CrossRefPubMed
44.
go back to reference Zarate R, El Jaber-Vazdekis N, Tejera N, Perez JA, Rodriguez C (2017) Significance of long chain polyunsaturated fatty acids in human health. Clin Transl Med 6(1):25CrossRefPubMedPubMedCentral Zarate R, El Jaber-Vazdekis N, Tejera N, Perez JA, Rodriguez C (2017) Significance of long chain polyunsaturated fatty acids in human health. Clin Transl Med 6(1):25CrossRefPubMedPubMedCentral
45.
go back to reference Sezgin E, Levental I, Mayor S, Eggeling C (2017) The mystery of membrane organization: composition, regulation and roles of lipid rafts. Nat Rev Mol Cell Biol 18(6):361–374CrossRefPubMedPubMedCentral Sezgin E, Levental I, Mayor S, Eggeling C (2017) The mystery of membrane organization: composition, regulation and roles of lipid rafts. Nat Rev Mol Cell Biol 18(6):361–374CrossRefPubMedPubMedCentral
47.
go back to reference Lange Y (1991) Disposition of intracellular cholesterol in human fibroblasts. J Lipid Res 32(2):329–339PubMed Lange Y (1991) Disposition of intracellular cholesterol in human fibroblasts. J Lipid Res 32(2):329–339PubMed
48.
go back to reference Kusminski CM, Shetty S, Orci L, Unger RH, Scherer PE (2009) Diabetes and apoptosis: lipotoxicity. Apoptosis 14(12):1484–1495CrossRefPubMed Kusminski CM, Shetty S, Orci L, Unger RH, Scherer PE (2009) Diabetes and apoptosis: lipotoxicity. Apoptosis 14(12):1484–1495CrossRefPubMed
49.
52.
go back to reference Lubke T, Lobel P, Sleat DE (2009) Proteomics of the lysosome. Biochim Biophys Acta 1793(4):625–635CrossRefPubMed Lubke T, Lobel P, Sleat DE (2009) Proteomics of the lysosome. Biochim Biophys Acta 1793(4):625–635CrossRefPubMed
54.
go back to reference Tatsuta T, Scharwey M, Langer T (2014) Mitochondrial lipid trafficking. Trends Cell Biol 24(1):44–52CrossRefPubMed Tatsuta T, Scharwey M, Langer T (2014) Mitochondrial lipid trafficking. Trends Cell Biol 24(1):44–52CrossRefPubMed
56.
go back to reference Garcia-Canaveras JC, Peris-Diaz MD, Alcoriza-Balaguer MI, Cerdan-Calero M, Donato MT, Lahoz A (2017) A lipidomic cell-based assay for studying drug-induced phospholipidosis and steatosis. Electrophoresis 38:2331–2340CrossRefPubMed Garcia-Canaveras JC, Peris-Diaz MD, Alcoriza-Balaguer MI, Cerdan-Calero M, Donato MT, Lahoz A (2017) A lipidomic cell-based assay for studying drug-induced phospholipidosis and steatosis. Electrophoresis 38:2331–2340CrossRefPubMed
57.
go back to reference Wallner S, Grandl M, Konovalova T, Sigruner A, Kopf T, Peer M et al (2014) Monocyte to macrophage differentiation goes along with modulation of the plasmalogen pattern through transcriptional regulation. PLoS ONE 9(4):e94102CrossRefPubMedPubMedCentral Wallner S, Grandl M, Konovalova T, Sigruner A, Kopf T, Peer M et al (2014) Monocyte to macrophage differentiation goes along with modulation of the plasmalogen pattern through transcriptional regulation. PLoS ONE 9(4):e94102CrossRefPubMedPubMedCentral
58.
go back to reference Burch TC, Isaac G, Booher CL, Rhim JS, Rainville P, Langridge J et al (2015) Comparative metabolomic and lipidomic analysis of phenotype stratified prostate cells. PLoS ONE 10(8):e0134206CrossRefPubMedPubMedCentral Burch TC, Isaac G, Booher CL, Rhim JS, Rainville P, Langridge J et al (2015) Comparative metabolomic and lipidomic analysis of phenotype stratified prostate cells. PLoS ONE 10(8):e0134206CrossRefPubMedPubMedCentral
59.
go back to reference Andreyev AY, Fahy E, Guan Z, Kelly S, Li X, McDonald JG et al (2010) Subcellular organelle lipidomics in TLR-4-activated macrophages. J Lipid Res 51(9):2785–2797CrossRefPubMedPubMedCentral Andreyev AY, Fahy E, Guan Z, Kelly S, Li X, McDonald JG et al (2010) Subcellular organelle lipidomics in TLR-4-activated macrophages. J Lipid Res 51(9):2785–2797CrossRefPubMedPubMedCentral
60.
go back to reference Bilgin M, Nylandsted J, Jaattela M, Maeda K (2017) Quantitative profiling of lysosomal lipidome by shotgun lipidomics. Methods Mol Biol 1594:19–34CrossRefPubMed Bilgin M, Nylandsted J, Jaattela M, Maeda K (2017) Quantitative profiling of lysosomal lipidome by shotgun lipidomics. Methods Mol Biol 1594:19–34CrossRefPubMed
61.
go back to reference Chitraju C, Trotzmuller M, Hartler J, Wolinski H, Thallinger GG, Lass A et al (2012) Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress. J Lipid Res 53(10):2141–2152CrossRefPubMedPubMedCentral Chitraju C, Trotzmuller M, Hartler J, Wolinski H, Thallinger GG, Lass A et al (2012) Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress. J Lipid Res 53(10):2141–2152CrossRefPubMedPubMedCentral
62.
go back to reference Hartler J, Kofeler HC, Trotzmuller M, Thallinger GG, Spener F (2014) Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models. Sci Data 1:140051CrossRefPubMedPubMedCentral Hartler J, Kofeler HC, Trotzmuller M, Thallinger GG, Spener F (2014) Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models. Sci Data 1:140051CrossRefPubMedPubMedCentral
63.
go back to reference Saquib NM, Jamwal S, Midha MK, Verma HN, Manivel V (2015) Quantitative proteomics and lipidomics analysis of endoplasmic reticulum of macrophage infected with Mycobacterium tuberculosis. Int J Proteom 2015:270438CrossRef Saquib NM, Jamwal S, Midha MK, Verma HN, Manivel V (2015) Quantitative proteomics and lipidomics analysis of endoplasmic reticulum of macrophage infected with Mycobacterium tuberculosis. Int J Proteom 2015:270438CrossRef
64.
go back to reference Feingold KR, Grunfeld C (2000) Introduction to lipids and lipoproteins. In: De Groot LJ, Chrousos G, Dungan K, Feingold KR, Grossman A, Hershman JM et al (eds) Endotext. MDText.com, Inc., South Dartmouth Feingold KR, Grunfeld C (2000) Introduction to lipids and lipoproteins. In: De Groot LJ, Chrousos G, Dungan K, Feingold KR, Grossman A, Hershman JM et al (eds) Endotext. MDText.com, Inc., South Dartmouth
65.
go back to reference Tomkin GH, Owens D (2012) The chylomicron: relationship to atherosclerosis. Int J Vasc Med 2012:784536PubMed Tomkin GH, Owens D (2012) The chylomicron: relationship to atherosclerosis. Int J Vasc Med 2012:784536PubMed
66.
go back to reference Ferretti G, Bacchetti T, Johnston TP, Banach M, Pirro M, Sahebkar A (2017) Lipoprotein(a): a missing culprit in the management of athero-thrombosis? J Cell Physiol 233(4):2966–2981CrossRefPubMed Ferretti G, Bacchetti T, Johnston TP, Banach M, Pirro M, Sahebkar A (2017) Lipoprotein(a): a missing culprit in the management of athero-thrombosis? J Cell Physiol 233(4):2966–2981CrossRefPubMed
67.
go back to reference Tosheska Trajkovska K, Topuzovska S (2017) High-density lipoprotein metabolism and reverse cholesterol transport: strategies for raising HDL cholesterol. Anatol J Cardiol 18(2):149–154PubMed Tosheska Trajkovska K, Topuzovska S (2017) High-density lipoprotein metabolism and reverse cholesterol transport: strategies for raising HDL cholesterol. Anatol J Cardiol 18(2):149–154PubMed
68.
go back to reference Superko HR (2009) Advanced lipoprotein testing and subfractionation are clinically useful. Circulation 119(17):2383–2395CrossRefPubMed Superko HR (2009) Advanced lipoprotein testing and subfractionation are clinically useful. Circulation 119(17):2383–2395CrossRefPubMed
69.
go back to reference Ference BA, Ginsberg HN, Graham I, Ray KK, Packard CJ, Bruckert E et al (2017) Low-density lipoproteins cause atherosclerotic cardiovascular disease. 1. Evidence from genetic, epidemiologic, and clinical studies. A consensus statement from the European Atherosclerosis Society Consensus Panel. Eur Heart J 48(32):2459–2472CrossRef Ference BA, Ginsberg HN, Graham I, Ray KK, Packard CJ, Bruckert E et al (2017) Low-density lipoproteins cause atherosclerotic cardiovascular disease. 1. Evidence from genetic, epidemiologic, and clinical studies. A consensus statement from the European Atherosclerosis Society Consensus Panel. Eur Heart J 48(32):2459–2472CrossRef
70.
go back to reference Christinat N, Masoodi M (2017) Comprehensive lipoprotein characterization using lipidomics analysis of human plasma. J Proteome Res 16:2947–2953CrossRefPubMed Christinat N, Masoodi M (2017) Comprehensive lipoprotein characterization using lipidomics analysis of human plasma. J Proteome Res 16:2947–2953CrossRefPubMed
71.
go back to reference Serna J, Garcia-Seisdedos D, Alcazar A, Lasuncion MA, Busto R, Pastor O (2015) Quantitative lipidomic analysis of plasma and plasma lipoproteins using MALDI-TOF mass spectrometry. Chem Phys Lipids 189:7–18CrossRefPubMed Serna J, Garcia-Seisdedos D, Alcazar A, Lasuncion MA, Busto R, Pastor O (2015) Quantitative lipidomic analysis of plasma and plasma lipoproteins using MALDI-TOF mass spectrometry. Chem Phys Lipids 189:7–18CrossRefPubMed
72.
go back to reference Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH et al (2010) Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res 51(11):3299–3305CrossRefPubMedPubMedCentral Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH et al (2010) Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res 51(11):3299–3305CrossRefPubMedPubMedCentral
73.
go back to reference Lund EG, Guileyardo JM, Russell DW (1999) cDNA cloning of cholesterol 24-hydroxylase, a mediator of cholesterol homeostasis in the brain. Proc Natl Acad Sci USA 96(13):7238–7243CrossRefPubMedPubMedCentral Lund EG, Guileyardo JM, Russell DW (1999) cDNA cloning of cholesterol 24-hydroxylase, a mediator of cholesterol homeostasis in the brain. Proc Natl Acad Sci USA 96(13):7238–7243CrossRefPubMedPubMedCentral
74.
go back to reference Lutjohann D, Papassotiropoulos A, Bjorkhem I, Locatelli S, Bagli M, Oehring RD et al (2000) Plasma 24S-hydroxycholesterol (cerebrosterol) is increased in Alzheimer and vascular demented patients. J Lipid Res 41(2):195–198PubMed Lutjohann D, Papassotiropoulos A, Bjorkhem I, Locatelli S, Bagli M, Oehring RD et al (2000) Plasma 24S-hydroxycholesterol (cerebrosterol) is increased in Alzheimer and vascular demented patients. J Lipid Res 41(2):195–198PubMed
75.
go back to reference Holzer M, Birner-Gruenberger R, Stojakovic T, El-Gamal D, Binder V, Wadsack C et al (2011) Uremia alters HDL composition and function. J Am Soc Nephrol 22(9):1631–1641CrossRefPubMedPubMedCentral Holzer M, Birner-Gruenberger R, Stojakovic T, El-Gamal D, Binder V, Wadsack C et al (2011) Uremia alters HDL composition and function. J Am Soc Nephrol 22(9):1631–1641CrossRefPubMedPubMedCentral
76.
go back to reference Xu C, Zhou D, Luo Y, Guo S, Wang T, Liu J et al (2017) Tissue and serum lipidome shows altered lipid composition with diagnostic potential in mycosis fungoides. Oncotarget 8:48041PubMedPubMedCentral Xu C, Zhou D, Luo Y, Guo S, Wang T, Liu J et al (2017) Tissue and serum lipidome shows altered lipid composition with diagnostic potential in mycosis fungoides. Oncotarget 8:48041PubMedPubMedCentral
77.
go back to reference Gomez Rosso L, Lhomme M, Merono T, Dellepiane A, Sorroche P, Hedjazi L et al (2017) Poor glycemic control in type 2 diabetes enhances functional and compositional alterations of small, dense HDL3c. Biochim Biophys Acta 1862(2):188–195CrossRefPubMed Gomez Rosso L, Lhomme M, Merono T, Dellepiane A, Sorroche P, Hedjazi L et al (2017) Poor glycemic control in type 2 diabetes enhances functional and compositional alterations of small, dense HDL3c. Biochim Biophys Acta 1862(2):188–195CrossRefPubMed
78.
go back to reference Ruby MA, Massart J, Hunerdosse DM, Schonke M, Correia JC, Louie SM et al (2017) Human carboxylesterase 2 reverses obesity-induced diacylglycerol accumulation and glucose intolerance. Cell Rep 18(3):636–646CrossRefPubMedPubMedCentral Ruby MA, Massart J, Hunerdosse DM, Schonke M, Correia JC, Louie SM et al (2017) Human carboxylesterase 2 reverses obesity-induced diacylglycerol accumulation and glucose intolerance. Cell Rep 18(3):636–646CrossRefPubMedPubMedCentral
79.
go back to reference Stegemann C, Drozdov I, Shalhoub J, Humphries J, Ladroue C, Didangelos A et al (2011) Comparative lipidomics profiling of human atherosclerotic plaques. Circ Cardiovasc Genet 4(3):232–242CrossRefPubMed Stegemann C, Drozdov I, Shalhoub J, Humphries J, Ladroue C, Didangelos A et al (2011) Comparative lipidomics profiling of human atherosclerotic plaques. Circ Cardiovasc Genet 4(3):232–242CrossRefPubMed
80.
go back to reference Umetani M, Ghosh P, Ishikawa T, Umetani J, Ahmed M, Mineo C et al (2014) The cholesterol metabolite 27-hydroxycholesterol promotes atherosclerosis via proinflammatory processes mediated by estrogen receptor alpha. Cell Metab 20(1):172–182CrossRefPubMedPubMedCentral Umetani M, Ghosh P, Ishikawa T, Umetani J, Ahmed M, Mineo C et al (2014) The cholesterol metabolite 27-hydroxycholesterol promotes atherosclerosis via proinflammatory processes mediated by estrogen receptor alpha. Cell Metab 20(1):172–182CrossRefPubMedPubMedCentral
81.
go back to reference Vaya J, Aviram M, Mahmood S, Hayek T, Grenadir E, Hoffman A et al (2001) Selective distribution of oxysterols in atherosclerotic lesions and human plasma lipoproteins. Free Radic Res 34(5):485–497CrossRefPubMed Vaya J, Aviram M, Mahmood S, Hayek T, Grenadir E, Hoffman A et al (2001) Selective distribution of oxysterols in atherosclerotic lesions and human plasma lipoproteins. Free Radic Res 34(5):485–497CrossRefPubMed
82.
go back to reference Burkard I, von Eckardstein A, Waeber G, Vollenweider P, Rentsch KM (2007) Lipoprotein distribution and biological variation of 24S- and 27-hydroxycholesterol in healthy volunteers. Atherosclerosis 194(1):71–78CrossRefPubMed Burkard I, von Eckardstein A, Waeber G, Vollenweider P, Rentsch KM (2007) Lipoprotein distribution and biological variation of 24S- and 27-hydroxycholesterol in healthy volunteers. Atherosclerosis 194(1):71–78CrossRefPubMed
83.
go back to reference Anand S, Young S, Esplin MS, Peaden B, Tolley HD, Porter TF et al (2016) Detection and confirmation of serum lipid biomarkers for preeclampsia using direct infusion mass spectrometry. J Lipid Res 57(4):687–696CrossRefPubMedPubMedCentral Anand S, Young S, Esplin MS, Peaden B, Tolley HD, Porter TF et al (2016) Detection and confirmation of serum lipid biomarkers for preeclampsia using direct infusion mass spectrometry. J Lipid Res 57(4):687–696CrossRefPubMedPubMedCentral
84.
go back to reference Gorden DL, Myers DS, Ivanova PT, Fahy E, Maurya MR, Gupta S et al (2015) Biomarkers of NAFLD progression: a lipidomics approach to an epidemic. J Lipid Res 56(3):722–736CrossRefPubMedPubMedCentral Gorden DL, Myers DS, Ivanova PT, Fahy E, Maurya MR, Gupta S et al (2015) Biomarkers of NAFLD progression: a lipidomics approach to an epidemic. J Lipid Res 56(3):722–736CrossRefPubMedPubMedCentral
85.
go back to reference Hu C, Zhou J, Yang S, Li H, Wang C, Fang X et al (2016) Oxidative stress leads to reduction of plasmalogen serving as a novel biomarker for systemic lupus erythematosus. Free Radic Biol Med 101:475–481CrossRefPubMed Hu C, Zhou J, Yang S, Li H, Wang C, Fang X et al (2016) Oxidative stress leads to reduction of plasmalogen serving as a novel biomarker for systemic lupus erythematosus. Free Radic Biol Med 101:475–481CrossRefPubMed
86.
go back to reference Trinh HK, Kim SC, Cho K, Kim SJ, Ban GY, Yoo HJ et al (2016) Exploration of the sphingolipid metabolite, sphingosine-1-phosphate and sphingosine, as novel biomarkers for aspirin-exacerbated respiratory disease. Sci Rep 6:36599CrossRefPubMedPubMedCentral Trinh HK, Kim SC, Cho K, Kim SJ, Ban GY, Yoo HJ et al (2016) Exploration of the sphingolipid metabolite, sphingosine-1-phosphate and sphingosine, as novel biomarkers for aspirin-exacerbated respiratory disease. Sci Rep 6:36599CrossRefPubMedPubMedCentral
87.
go back to reference Fredman G, Hellmann J, Proto JD, Kuriakose G, Colas RA, Dorweiler B et al (2016) An imbalance between specialized pro-resolving lipid mediators and pro-inflammatory leukotrienes promotes instability of atherosclerotic plaques. Nat Commun 7:12859CrossRefPubMedPubMedCentral Fredman G, Hellmann J, Proto JD, Kuriakose G, Colas RA, Dorweiler B et al (2016) An imbalance between specialized pro-resolving lipid mediators and pro-inflammatory leukotrienes promotes instability of atherosclerotic plaques. Nat Commun 7:12859CrossRefPubMedPubMedCentral
89.
go back to reference Deeb RS, Upmacis RK, Lamon BD, Gross SS, Hajjar DP (2008) Maintaining equilibrium by selective targeting of cyclooxygenase pathways: promising offensives against vascular injury. Hypertension 51(1):1–7CrossRefPubMed Deeb RS, Upmacis RK, Lamon BD, Gross SS, Hajjar DP (2008) Maintaining equilibrium by selective targeting of cyclooxygenase pathways: promising offensives against vascular injury. Hypertension 51(1):1–7CrossRefPubMed
90.
91.
go back to reference Zurier RB, Rossetti RG, Jacobson EW, DeMarco DM, Liu NY, Temming JE et al (1996) Gamma-linolenic acid treatment of rheumatoid arthritis. A randomized, placebo-controlled trial. Arthritis Rheum 39(11):1808–1817CrossRefPubMed Zurier RB, Rossetti RG, Jacobson EW, DeMarco DM, Liu NY, Temming JE et al (1996) Gamma-linolenic acid treatment of rheumatoid arthritis. A randomized, placebo-controlled trial. Arthritis Rheum 39(11):1808–1817CrossRefPubMed
92.
go back to reference Lim A, Wenk MR, Tong L (2015) Lipid-based therapy for ocular surface inflammation and disease. Trends Mol Med 21(12):736–748CrossRefPubMed Lim A, Wenk MR, Tong L (2015) Lipid-based therapy for ocular surface inflammation and disease. Trends Mol Med 21(12):736–748CrossRefPubMed
93.
go back to reference Harris WS, Miller M, Tighe AP, Davidson MH, Schaefer EJ (2008) Omega-3 fatty acids and coronary heart disease risk: clinical and mechanistic perspectives. Atherosclerosis 197(1):12–24CrossRefPubMed Harris WS, Miller M, Tighe AP, Davidson MH, Schaefer EJ (2008) Omega-3 fatty acids and coronary heart disease risk: clinical and mechanistic perspectives. Atherosclerosis 197(1):12–24CrossRefPubMed
95.
go back to reference Gallego SF, Sprenger RR, Neess D, Pauling JK, Faergeman NJ, Ejsing CS (2017) Quantitative lipidomics reveals age-dependent perturbations of whole-body lipid metabolism in ACBP deficient mice. Biochim Biophys Acta 1862(2):145–155CrossRefPubMed Gallego SF, Sprenger RR, Neess D, Pauling JK, Faergeman NJ, Ejsing CS (2017) Quantitative lipidomics reveals age-dependent perturbations of whole-body lipid metabolism in ACBP deficient mice. Biochim Biophys Acta 1862(2):145–155CrossRefPubMed
97.
go back to reference McDonald JG, Thompson BM, McCrum EC, Russell DW (2007) Extraction and analysis of sterols in biological matrices by high performance liquid chromatography electrospray ionization mass spectrometry. Methods Enzymol 432:145–170CrossRefPubMed McDonald JG, Thompson BM, McCrum EC, Russell DW (2007) Extraction and analysis of sterols in biological matrices by high performance liquid chromatography electrospray ionization mass spectrometry. Methods Enzymol 432:145–170CrossRefPubMed
98.
go back to reference Tsikas D, Zoerner AA (2014) Analysis of eicosanoids by LC-MS/MS and GC-MS/MS: a historical retrospect and a discussion. J Chromatogr B 964:79–88CrossRef Tsikas D, Zoerner AA (2014) Analysis of eicosanoids by LC-MS/MS and GC-MS/MS: a historical retrospect and a discussion. J Chromatogr B 964:79–88CrossRef
Metadata
Title
Lipidomics unveils the complexity of the lipidome in metabolic diseases
Authors
Todd A. Lydic
Young-Hwa Goo
Publication date
01-12-2018
Publisher
Springer Berlin Heidelberg
Published in
Clinical and Translational Medicine / Issue 1/2018
Electronic ISSN: 2001-1326
DOI
https://doi.org/10.1186/s40169-018-0182-9

Other articles of this Issue 1/2018

Clinical and Translational Medicine 1/2018 Go to the issue