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Published in: Journal of Translational Medicine 1/2017

Open Access 01-12-2017 | Review

The various aspects of genetic and epigenetic toxicology: testing methods and clinical applications

Authors: Ning Ren, Manar Atyah, Wan-Yong Chen, Chen-Hao Zhou

Published in: Journal of Translational Medicine | Issue 1/2017

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Abstract

Genotoxicity refers to the ability of harmful substances to damage genetic information in cells. Being exposed to chemical and biological agents can result in genomic instabilities and/or epigenetic alterations, which translate into a variety of diseases, cancer included. This concise review discusses, from both a genetic and epigenetic point of view, the current detection methods of different agents’ genotoxicity, along with their basic and clinical relation to human cancer, chemotherapy, germ cells and stem cells.
Literature
1.
go back to reference Miyamae Y, Yamamoto M, Sasaki YF, et al. Evaluation of a tissue homogenization technique that isolates nuclei for the in vivo single cell gel electrophoresis (comet) assay: a collaborative study by five laboratories. Mutat Res. 1998;418(2–3):131–40.CrossRefPubMed Miyamae Y, Yamamoto M, Sasaki YF, et al. Evaluation of a tissue homogenization technique that isolates nuclei for the in vivo single cell gel electrophoresis (comet) assay: a collaborative study by five laboratories. Mutat Res. 1998;418(2–3):131–40.CrossRefPubMed
2.
go back to reference Engström W, Darbre P, Eriksson S, et al. The potential for chemical mixtures from the environment to enable the cancer hallmark of sustained proliferative signalling. Carcinogenesis. 2015;36(Suppl 1):S38–60.CrossRefPubMedCentralPubMed Engström W, Darbre P, Eriksson S, et al. The potential for chemical mixtures from the environment to enable the cancer hallmark of sustained proliferative signalling. Carcinogenesis. 2015;36(Suppl 1):S38–60.CrossRefPubMedCentralPubMed
3.
go back to reference Sun C, Wei X, Fei Y, et al. Mobile phone signal exposure triggers a hormesis-like effect in Atm+/+ and Atm−/− mouse embryonic fibroblasts. Sci Rep. 2016;18(6):37423.CrossRef Sun C, Wei X, Fei Y, et al. Mobile phone signal exposure triggers a hormesis-like effect in Atm+/+ and Atm−/− mouse embryonic fibroblasts. Sci Rep. 2016;18(6):37423.CrossRef
4.
go back to reference Huk A, Izak-Nau E, El Yamani N, et al. Impact of nanosilver on various DNA lesions and HPRT gene mutations—effects of charge and surface coating. Part Fibre Toxicol. 2015;24(12):25.CrossRef Huk A, Izak-Nau E, El Yamani N, et al. Impact of nanosilver on various DNA lesions and HPRT gene mutations—effects of charge and surface coating. Part Fibre Toxicol. 2015;24(12):25.CrossRef
6.
go back to reference Chen J, Miller BF, Furano AV. Repair of naturally occurring mismatches can induce mutations in flanking DNA. Elife. 2014;29(3):e02001. Chen J, Miller BF, Furano AV. Repair of naturally occurring mismatches can induce mutations in flanking DNA. Elife. 2014;29(3):e02001.
7.
go back to reference Nagarathna PKM, Wesley MJ, Reddy PS, et al. Review on genotoxicity, its molecular mechanisms and prevention. Int J Pharm Sci Rev Res. 2013;22(1):236–43. Nagarathna PKM, Wesley MJ, Reddy PS, et al. Review on genotoxicity, its molecular mechanisms and prevention. Int J Pharm Sci Rev Res. 2013;22(1):236–43.
8.
go back to reference Donmez-Altuntas H, Gokalp-Yildiz P, Bitgen N, et al. Evaluation of genotoxicity, cytotoxicity and cytostasis in human lymphocytes exposed to patulin by using the cytokinesis-block micronucleus cytome (CBMN cyt) assay. Mycotoxin Res. 2013;29(2):63–70.CrossRefPubMed Donmez-Altuntas H, Gokalp-Yildiz P, Bitgen N, et al. Evaluation of genotoxicity, cytotoxicity and cytostasis in human lymphocytes exposed to patulin by using the cytokinesis-block micronucleus cytome (CBMN cyt) assay. Mycotoxin Res. 2013;29(2):63–70.CrossRefPubMed
9.
go back to reference Pfohl-Leszkowicz A, Manderville RA. An update on direct genotoxicity as a molecular mechanism of ochratoxin a carcinogenicity. Chem Res Toxicol. 2012;25(2):252–62.CrossRefPubMed Pfohl-Leszkowicz A, Manderville RA. An update on direct genotoxicity as a molecular mechanism of ochratoxin a carcinogenicity. Chem Res Toxicol. 2012;25(2):252–62.CrossRefPubMed
10.
go back to reference Magdolenova Z, Collins A, Kumar A, et al. Mechanisms of genotoxicity. A review of in vitro and in vivo studies with engineered nanoparticles. Nanotoxicology. 2014;8(3):233–78.CrossRefPubMed Magdolenova Z, Collins A, Kumar A, et al. Mechanisms of genotoxicity. A review of in vitro and in vivo studies with engineered nanoparticles. Nanotoxicology. 2014;8(3):233–78.CrossRefPubMed
11.
go back to reference Schnatter AR, Glass DC, Tang G, et al. Myelodysplastic syndrome and benzene exposure among petroleum workers: an international pooled analysis. J Natl Cancer Inst. 2012;104(22):1724–37.CrossRefPubMedCentralPubMed Schnatter AR, Glass DC, Tang G, et al. Myelodysplastic syndrome and benzene exposure among petroleum workers: an international pooled analysis. J Natl Cancer Inst. 2012;104(22):1724–37.CrossRefPubMedCentralPubMed
12.
go back to reference Rinsky RA, Smith AB, Hornung R, et al. Benzene and leukemia. An epidemiologic risk assessment. N Engl J Med. 1987;316(17):1044–50.CrossRefPubMed Rinsky RA, Smith AB, Hornung R, et al. Benzene and leukemia. An epidemiologic risk assessment. N Engl J Med. 1987;316(17):1044–50.CrossRefPubMed
13.
go back to reference Son MY, Deng CX, Hoeijmarkers JH, et al. A mechanism for 1,4-benzoquinone-induced genotoxicity. Oncotarget. 2016;7(29):46433–47.PubMedCentralPubMed Son MY, Deng CX, Hoeijmarkers JH, et al. A mechanism for 1,4-benzoquinone-induced genotoxicity. Oncotarget. 2016;7(29):46433–47.PubMedCentralPubMed
14.
go back to reference Arzt J, Mount ME. Hepatotoxicity associated with pyrrolizidine alkaloid (Crotalaria spp.) ingestion in a horse on Easter Island. Vet Hum Toxicol. 1999;41(2):96–9.PubMed Arzt J, Mount ME. Hepatotoxicity associated with pyrrolizidine alkaloid (Crotalaria spp.) ingestion in a horse on Easter Island. Vet Hum Toxicol. 1999;41(2):96–9.PubMed
15.
go back to reference McCann J, Choi E, Yamasaki E, et al. Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals. Proc Natl Acad Sci USA. 1975;72(12):5135–9.CrossRefPubMedCentralPubMed McCann J, Choi E, Yamasaki E, et al. Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals. Proc Natl Acad Sci USA. 1975;72(12):5135–9.CrossRefPubMedCentralPubMed
16.
go back to reference Galloway SM, Bloom AD, Resnick M, et al. Development of a standard protocol for in vitro cytogenetic testing with Chinese hamster ovary cells: comparison of results for 22 compounds in two laboratories. Environ Mol Mutagen. 1985;7(1):1–51.CrossRef Galloway SM, Bloom AD, Resnick M, et al. Development of a standard protocol for in vitro cytogenetic testing with Chinese hamster ovary cells: comparison of results for 22 compounds in two laboratories. Environ Mol Mutagen. 1985;7(1):1–51.CrossRef
18.
go back to reference Gossen JA, de Leeuw WJ, Tan CH, et al. Efficient rescue of integrated shuttle vectors from transgenic mice: a model for studying mutations in vivo. Proc Natl Acad Sci USA. 1989;86(20):7971–5.CrossRefPubMedCentralPubMed Gossen JA, de Leeuw WJ, Tan CH, et al. Efficient rescue of integrated shuttle vectors from transgenic mice: a model for studying mutations in vivo. Proc Natl Acad Sci USA. 1989;86(20):7971–5.CrossRefPubMedCentralPubMed
19.
go back to reference Garcia AM, Derventzi A, Busuttil R, et al. A model system for analyzing somatic mutations in Drosophila melanogaster. Nat Methods. 2007;4(5):401–3.PubMedCentralPubMed Garcia AM, Derventzi A, Busuttil R, et al. A model system for analyzing somatic mutations in Drosophila melanogaster. Nat Methods. 2007;4(5):401–3.PubMedCentralPubMed
20.
go back to reference Maslov AY, Quispe-Tintaya W, Gorbacheva T, et al. High-throughput sequencing in mutation detection: a new generation of genotoxicity tests? Mutat Res. 2015;776:136–43.CrossRefPubMedCentralPubMed Maslov AY, Quispe-Tintaya W, Gorbacheva T, et al. High-throughput sequencing in mutation detection: a new generation of genotoxicity tests? Mutat Res. 2015;776:136–43.CrossRefPubMedCentralPubMed
21.
go back to reference Brendler-Schwaab S, Hartmann A, Pfuhler S, et al. The in vivo comet assay: use and status in genotoxicity testing. Mutagenesis. 2005;20(4):245–54.CrossRefPubMed Brendler-Schwaab S, Hartmann A, Pfuhler S, et al. The in vivo comet assay: use and status in genotoxicity testing. Mutagenesis. 2005;20(4):245–54.CrossRefPubMed
22.
go back to reference Araldi RP, de Melo TC, Mendes TB, et al. Using the comet and micronucleus assays for genotoxicity studies: a review. Biomed Pharmacother. 2015;72:74–82.CrossRefPubMed Araldi RP, de Melo TC, Mendes TB, et al. Using the comet and micronucleus assays for genotoxicity studies: a review. Biomed Pharmacother. 2015;72:74–82.CrossRefPubMed
23.
go back to reference Hartman PE, Ames BN, Roth JR, et al. Target sequences for mutagenesis in Salmonella histidine-requiring mutants. Environ Mol Mutagen. 1986;8(4):631–41.CrossRef Hartman PE, Ames BN, Roth JR, et al. Target sequences for mutagenesis in Salmonella histidine-requiring mutants. Environ Mol Mutagen. 1986;8(4):631–41.CrossRef
24.
go back to reference Kirkland D, Aardema M, Henderson L, et al. Evaluation of the ability of a battery of three in vitro genotoxicity tests to discriminate rodent carcinogens and non-carcinogens. I. Sensitivity, specificity and relative predictivity. Mutat Res. 2005;584(1–2):1–256.CrossRefPubMed Kirkland D, Aardema M, Henderson L, et al. Evaluation of the ability of a battery of three in vitro genotoxicity tests to discriminate rodent carcinogens and non-carcinogens. I. Sensitivity, specificity and relative predictivity. Mutat Res. 2005;584(1–2):1–256.CrossRefPubMed
25.
go back to reference Kitamoto S, Matsuyama R, Uematsu Y, et al. Genotoxicity evaluation of benzene, di(2-ethylhexyl) phthalate, and trisodium ethylenediamine tetraacetic acid monohydrate using a combined rat comet/micronucleus assays. Mutat Res Genet Toxicol Environ Mutagen. 2015;786–788:137–43.CrossRefPubMed Kitamoto S, Matsuyama R, Uematsu Y, et al. Genotoxicity evaluation of benzene, di(2-ethylhexyl) phthalate, and trisodium ethylenediamine tetraacetic acid monohydrate using a combined rat comet/micronucleus assays. Mutat Res Genet Toxicol Environ Mutagen. 2015;786–788:137–43.CrossRefPubMed
26.
go back to reference Nandhakumar S, Parasuraman S, Shanmugam MM, et al. Evaluation of DNA damage using single-cell gel electrophoresis (comet assay). J Pharmacol Pharmacother. 2011;2(2):107–11.CrossRefPubMedCentralPubMed Nandhakumar S, Parasuraman S, Shanmugam MM, et al. Evaluation of DNA damage using single-cell gel electrophoresis (comet assay). J Pharmacol Pharmacother. 2011;2(2):107–11.CrossRefPubMedCentralPubMed
27.
29.
go back to reference Evans HJ, Neary GJ, Williamson FS. The relative biological efficiency of single doses of fast neutrons and gamma-rays on Vicia faba roots and the effect of oxygen. Part II. Chromosome damage: the production of micronuclei. Int J Radiat Biol Relat Stud Phys Chem Med. 1959;1:216–29.CrossRefPubMed Evans HJ, Neary GJ, Williamson FS. The relative biological efficiency of single doses of fast neutrons and gamma-rays on Vicia faba roots and the effect of oxygen. Part II. Chromosome damage: the production of micronuclei. Int J Radiat Biol Relat Stud Phys Chem Med. 1959;1:216–29.CrossRefPubMed
30.
go back to reference Pellegri V, Gorbi G, Buschini A. Comet assay on Daphnia magna in eco-genotoxicity testing. Aquat Toxicol. 2014;155:261–8.CrossRefPubMed Pellegri V, Gorbi G, Buschini A. Comet assay on Daphnia magna in eco-genotoxicity testing. Aquat Toxicol. 2014;155:261–8.CrossRefPubMed
31.
go back to reference Glei M, Schneider T, Schlörmann W. Comet assay: an essential tool in toxicological research. Arch Toxicol. 2016;90(10):2315–36.CrossRefPubMed Glei M, Schneider T, Schlörmann W. Comet assay: an essential tool in toxicological research. Arch Toxicol. 2016;90(10):2315–36.CrossRefPubMed
32.
go back to reference Llana-Ruiz-Cabello M, Maisanaba S, Puerto M, et al. Genotoxicity evaluation of carvacrol in rats using a combined micronucleus and comet assay. Food Chem Toxicol. 2016;98(Pt B):240–50.CrossRefPubMed Llana-Ruiz-Cabello M, Maisanaba S, Puerto M, et al. Genotoxicity evaluation of carvacrol in rats using a combined micronucleus and comet assay. Food Chem Toxicol. 2016;98(Pt B):240–50.CrossRefPubMed
33.
go back to reference Bishop KS, Erdrich S, Karunasinghe N, et al. An investigation into the association between DNA damage and dietary fatty acid in men with prostate cancer. Nutrients. 2015;7(1):405–22.CrossRefPubMedCentralPubMed Bishop KS, Erdrich S, Karunasinghe N, et al. An investigation into the association between DNA damage and dietary fatty acid in men with prostate cancer. Nutrients. 2015;7(1):405–22.CrossRefPubMedCentralPubMed
34.
go back to reference Subash P. Assessment of oxidative DNA damage by alkaline comet assay in human essential hypertension. Indian J Clin Biochem. 2016;31(2):185–93.CrossRefPubMed Subash P. Assessment of oxidative DNA damage by alkaline comet assay in human essential hypertension. Indian J Clin Biochem. 2016;31(2):185–93.CrossRefPubMed
35.
go back to reference Corredor Z, Rodríguez-Ribera L, Silva I, et al. Levels of DNA damage in peripheral blood lymphocytes of patients undergoing standard hemodialysis vs on-line hemodiafiltration: a comet assay investigation. Mutat Res Genet Toxicol Environ Mutagen. 2016;808:1–7.CrossRefPubMed Corredor Z, Rodríguez-Ribera L, Silva I, et al. Levels of DNA damage in peripheral blood lymphocytes of patients undergoing standard hemodialysis vs on-line hemodiafiltration: a comet assay investigation. Mutat Res Genet Toxicol Environ Mutagen. 2016;808:1–7.CrossRefPubMed
36.
go back to reference Pittaluga M, Sgadari A, Dimauro I, et al. Physical exercise and redox balance in type 2 diabetics: effects of moderate training on biomarkers of oxidative stress and DNA damage evaluated through comet assay. Oxid Med Cell Longev. 2015;2015:981242.CrossRefPubMedCentralPubMed Pittaluga M, Sgadari A, Dimauro I, et al. Physical exercise and redox balance in type 2 diabetics: effects of moderate training on biomarkers of oxidative stress and DNA damage evaluated through comet assay. Oxid Med Cell Longev. 2015;2015:981242.CrossRefPubMedCentralPubMed
37.
go back to reference Santoro R, Ferraiuolo M, Morgano GP, et al. Comet assay in cancer chemoprevention. Methods Mol Biol. 2016;1379:99–105.CrossRefPubMed Santoro R, Ferraiuolo M, Morgano GP, et al. Comet assay in cancer chemoprevention. Methods Mol Biol. 2016;1379:99–105.CrossRefPubMed
38.
go back to reference Cassel AP, Barcellos RB, da Silva CM, et al. Association between human papillomavirus (HPV) DNA and micronuclei in normal cervical cytology. Genet Mol Biol. 2014;37(2):360–3.CrossRefPubMedCentralPubMed Cassel AP, Barcellos RB, da Silva CM, et al. Association between human papillomavirus (HPV) DNA and micronuclei in normal cervical cytology. Genet Mol Biol. 2014;37(2):360–3.CrossRefPubMedCentralPubMed
39.
go back to reference Minaei SE, Mozdarani H, Motazakker M, et al. Evaluation of cytogenetic alterations in peripheral blood lymphocytes of esophageal cancer patients treated with radiotherapy or chemoradiotherapy using cytokinesis-blocked micronucleus assay. Acta Med Iran. 2016;54(1):9–14. Minaei SE, Mozdarani H, Motazakker M, et al. Evaluation of cytogenetic alterations in peripheral blood lymphocytes of esophageal cancer patients treated with radiotherapy or chemoradiotherapy using cytokinesis-blocked micronucleus assay. Acta Med Iran. 2016;54(1):9–14.
40.
go back to reference Gamulin M, Garaj-Vrhovac V, Kopjar N. Evaluation of DNA damage in radiotherapy-treated cancer patients using the alkaline comet assay. Coll Antropol. 2007;31(3):837–45.PubMed Gamulin M, Garaj-Vrhovac V, Kopjar N. Evaluation of DNA damage in radiotherapy-treated cancer patients using the alkaline comet assay. Coll Antropol. 2007;31(3):837–45.PubMed
41.
go back to reference Thybaud V, Macgregor JT, Müller L, et al. Strategies in case of positive in vivo results in genotoxicity testing. Mutat Res. 2011;723(2):121–8.CrossRefPubMed Thybaud V, Macgregor JT, Müller L, et al. Strategies in case of positive in vivo results in genotoxicity testing. Mutat Res. 2011;723(2):121–8.CrossRefPubMed
42.
go back to reference Martus HJ, Hayashi M, Honma M, et al. Summary of major conclusions from the 6th international workshop on genotoxicity testing (IWGT), Foz do Iguaçu, Brazil. Mutat Res Genet Toxicol Environ Mutagen. 2015;1(783):1–5.CrossRef Martus HJ, Hayashi M, Honma M, et al. Summary of major conclusions from the 6th international workshop on genotoxicity testing (IWGT), Foz do Iguaçu, Brazil. Mutat Res Genet Toxicol Environ Mutagen. 2015;1(783):1–5.CrossRef
43.
go back to reference Wang J, Che B, Zhang LW, et al. Comparative genotoxicity of silver nanoparticles in human liver HepG2 and lung epithelial A549 cells. J Appl Toxicol. 2016. doi:10.1002/jat.3385. Wang J, Che B, Zhang LW, et al. Comparative genotoxicity of silver nanoparticles in human liver HepG2 and lung epithelial A549 cells. J Appl Toxicol. 2016. doi:10.​1002/​jat.​3385.
44.
go back to reference Lewinska A, Siwak J, Rzeszutek I, et al. Diosmin induces genotoxicity and apoptosis in DU145 prostate cancer cell line. Toxicol In Vitro. 2015;29(3):417–25.CrossRefPubMed Lewinska A, Siwak J, Rzeszutek I, et al. Diosmin induces genotoxicity and apoptosis in DU145 prostate cancer cell line. Toxicol In Vitro. 2015;29(3):417–25.CrossRefPubMed
45.
go back to reference Moore PD, Yedjou CG, Tchounwou PB. Malathion-induced oxidative stress, cytotoxicity, and genotoxicity in human liver carcinoma (HepG2) cells. Environ Toxicol. 2010;25(3):221–6.CrossRefPubMedCentralPubMed Moore PD, Yedjou CG, Tchounwou PB. Malathion-induced oxidative stress, cytotoxicity, and genotoxicity in human liver carcinoma (HepG2) cells. Environ Toxicol. 2010;25(3):221–6.CrossRefPubMedCentralPubMed
46.
go back to reference Fortunato JJ, Agostinho FR, Réus GZ, et al. Lipid peroxidative damage on malathion exposure in rats. Neurotox Res. 2006;9(1):23–8.CrossRefPubMed Fortunato JJ, Agostinho FR, Réus GZ, et al. Lipid peroxidative damage on malathion exposure in rats. Neurotox Res. 2006;9(1):23–8.CrossRefPubMed
47.
go back to reference Nishizaki T, Kanno T, Tsuchiya A, et al. 1-[2-(2-Methoxyphenylamino)ethylamino]-3-(naphthalene-1-yloxy)propan-2-ol may be a promising anticancer drug. Molecules. 2014;19(12):21462–72.CrossRefPubMed Nishizaki T, Kanno T, Tsuchiya A, et al. 1-[2-(2-Methoxyphenylamino)ethylamino]-3-(naphthalene-1-yloxy)propan-2-ol may be a promising anticancer drug. Molecules. 2014;19(12):21462–72.CrossRefPubMed
48.
go back to reference Ke K, Li H, Yao H, et al. In silico prediction and in vitro and in vivo validation of acaricide fluazuron as a potential inhibitor of FGFR3 and a candidate anticancer drug for bladder carcinoma. Chem Biol Drug Des. 2016. doi:10.1111/cbdd.12872.PubMed Ke K, Li H, Yao H, et al. In silico prediction and in vitro and in vivo validation of acaricide fluazuron as a potential inhibitor of FGFR3 and a candidate anticancer drug for bladder carcinoma. Chem Biol Drug Des. 2016. doi:10.​1111/​cbdd.​12872.PubMed
49.
50.
51.
go back to reference Sánchez-Suárez P, Ostrosky-Wegman P, Gallegos-Hernández F, et al. DNA damage in peripheral blood lymphocytes in patients during combined chemotherapy for breast cancer. Mutat Res. 2008;640(1–2):8–15.CrossRefPubMed Sánchez-Suárez P, Ostrosky-Wegman P, Gallegos-Hernández F, et al. DNA damage in peripheral blood lymphocytes in patients during combined chemotherapy for breast cancer. Mutat Res. 2008;640(1–2):8–15.CrossRefPubMed
52.
go back to reference Almeida EP, Gutiérrez MG, Adami NP. Monitoring and evaluation of side effects of chemotherapy in patients with colon cancer. Rev Lat Am Enfermagem. 2004;12(5):760–6.CrossRefPubMed Almeida EP, Gutiérrez MG, Adami NP. Monitoring and evaluation of side effects of chemotherapy in patients with colon cancer. Rev Lat Am Enfermagem. 2004;12(5):760–6.CrossRefPubMed
53.
go back to reference Walko CM, Grande C. Management of common adverse events in patients treated with sorafenib: nurse and pharmacist perspective. Semin Oncol. 2014;41(Suppl 2):S17–28.CrossRefPubMed Walko CM, Grande C. Management of common adverse events in patients treated with sorafenib: nurse and pharmacist perspective. Semin Oncol. 2014;41(Suppl 2):S17–28.CrossRefPubMed
54.
go back to reference Etebari M, Jafarian-Dehkordi A, Lame V. Evaluation of protective effect of amifostine on dacarbazine induced genotoxicity. Res Pharm Sci. 2015;10(1):68–74.PubMedCentralPubMed Etebari M, Jafarian-Dehkordi A, Lame V. Evaluation of protective effect of amifostine on dacarbazine induced genotoxicity. Res Pharm Sci. 2015;10(1):68–74.PubMedCentralPubMed
55.
go back to reference Vlastos D, Drosopoulou E, Efthimiou I, et al. Genotoxic and antigenotoxic assessment of chios mastic oil by the in vitro micronucleus test on human lymphocytes and the in vivo wing somatic test on Drosophila. PLoS ONE. 2015;10(6):e0130498.CrossRefPubMedCentralPubMed Vlastos D, Drosopoulou E, Efthimiou I, et al. Genotoxic and antigenotoxic assessment of chios mastic oil by the in vitro micronucleus test on human lymphocytes and the in vivo wing somatic test on Drosophila. PLoS ONE. 2015;10(6):e0130498.CrossRefPubMedCentralPubMed
57.
go back to reference Benjamini O, Jain P, Trinh L, et al. Second cancers in patients with chronic lymphocytic leukemia who received frontline fludarabine, cyclophosphamide and rituximab therapy: distribution and clinical outcomes. Leuk Lymphoma. 2015;56(6):1643–50.CrossRefPubMed Benjamini O, Jain P, Trinh L, et al. Second cancers in patients with chronic lymphocytic leukemia who received frontline fludarabine, cyclophosphamide and rituximab therapy: distribution and clinical outcomes. Leuk Lymphoma. 2015;56(6):1643–50.CrossRefPubMed
58.
go back to reference Horibata K, Ukai A, Ishikawa S, et al. Monitoring genotoxicity in patients receiving chemotherapy for cancer: application of the PIG-A assay. Mutat Res Genet Toxicol Environ Mutagen. 2016;808:20–6.CrossRefPubMed Horibata K, Ukai A, Ishikawa S, et al. Monitoring genotoxicity in patients receiving chemotherapy for cancer: application of the PIG-A assay. Mutat Res Genet Toxicol Environ Mutagen. 2016;808:20–6.CrossRefPubMed
59.
go back to reference Demarini DM. Declaring the existence of human germ-cell mutagens. Environ Mol Mutagen. 2012;53(3):166–72.CrossRefPubMed Demarini DM. Declaring the existence of human germ-cell mutagens. Environ Mol Mutagen. 2012;53(3):166–72.CrossRefPubMed
60.
go back to reference Yauk CL, Aardema MJ, JV Benthem, et al. Approaches for identifying germ cell mutagens: report of the 2013 IWGT workshop on germ cell assays. Mutat Res Genet Toxicol Environ Mutagen. 2015;1(783):36–54.CrossRef Yauk CL, Aardema MJ, JV Benthem, et al. Approaches for identifying germ cell mutagens: report of the 2013 IWGT workshop on germ cell assays. Mutat Res Genet Toxicol Environ Mutagen. 2015;1(783):36–54.CrossRef
61.
go back to reference Allard P, Kleinstreuer NC, Knudsen TB, et al. A C. elegans screening platform for the rapid assessment of chemical disruption of germline function. Environ Health Perspect. 2013;121(6):717–24.CrossRefPubMedCentralPubMed Allard P, Kleinstreuer NC, Knudsen TB, et al. A C. elegans screening platform for the rapid assessment of chemical disruption of germline function. Environ Health Perspect. 2013;121(6):717–24.CrossRefPubMedCentralPubMed
62.
go back to reference Stankiewicz P, Lupski JR. Structural variation in the human genome and its role in disease. Annu Rev Med. 2010;61:437–55.CrossRefPubMed Stankiewicz P, Lupski JR. Structural variation in the human genome and its role in disease. Annu Rev Med. 2010;61:437–55.CrossRefPubMed
63.
go back to reference Migliore L, Colognato R, Naccarati A, et al. Relationship between genotoxicity biomarkers in somatic and germ cells: findings from a biomonitoring study. Mutagenesis. 2006;21(2):149–52.CrossRefPubMed Migliore L, Colognato R, Naccarati A, et al. Relationship between genotoxicity biomarkers in somatic and germ cells: findings from a biomonitoring study. Mutagenesis. 2006;21(2):149–52.CrossRefPubMed
64.
go back to reference Vogel EW, Natarajan AT. DNA damage and repair in somatic and germ cells in vivo. Mutat Res. 1995;330(1–2):183–208.CrossRefPubMed Vogel EW, Natarajan AT. DNA damage and repair in somatic and germ cells in vivo. Mutat Res. 1995;330(1–2):183–208.CrossRefPubMed
65.
go back to reference Allen JW, Poorman PA, Backer LC, et al. Synaptonemal complex damage as a measure of genotoxicity at meiosis. Cell Biol Toxicol. 1988;4(4):487–94.CrossRefPubMed Allen JW, Poorman PA, Backer LC, et al. Synaptonemal complex damage as a measure of genotoxicity at meiosis. Cell Biol Toxicol. 1988;4(4):487–94.CrossRefPubMed
66.
go back to reference Hong SG, Dunbar CE, Winkler T. Assessing the risks of genotoxicity in the therapeutic development of induced pluripotent stem cells. Mol Ther. 2013;21(2):272–81.CrossRefPubMed Hong SG, Dunbar CE, Winkler T. Assessing the risks of genotoxicity in the therapeutic development of induced pluripotent stem cells. Mol Ther. 2013;21(2):272–81.CrossRefPubMed
67.
go back to reference Taapken SM, Nisler BS, Newton MA, et al. Karyotypic abnormalities in human induced pluripotent stem cells and embryonic stem cells. Nat Biotechnol. 2011;29(4):313–4.CrossRefPubMed Taapken SM, Nisler BS, Newton MA, et al. Karyotypic abnormalities in human induced pluripotent stem cells and embryonic stem cells. Nat Biotechnol. 2011;29(4):313–4.CrossRefPubMed
68.
go back to reference Laurent LC, Ulitsky I, Slavin I, et al. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell. 2011;8(1):106–18.CrossRefPubMedCentralPubMed Laurent LC, Ulitsky I, Slavin I, et al. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell. 2011;8(1):106–18.CrossRefPubMedCentralPubMed
69.
go back to reference Martins-Taylor K, Nisler BS, Taapken SM, et al. Recurrent copy number variations in human induced pluripotent stem cells. Nat Biotechnol. 2011;29(6):488–91.CrossRefPubMed Martins-Taylor K, Nisler BS, Taapken SM, et al. Recurrent copy number variations in human induced pluripotent stem cells. Nat Biotechnol. 2011;29(6):488–91.CrossRefPubMed
70.
go back to reference Baum C, Modlich U, Göhring G, et al. Concise review: managing genotoxicity in the therapeutic modification of stem cells. Stem Cells. 2011;29(10):1479–84.CrossRefPubMed Baum C, Modlich U, Göhring G, et al. Concise review: managing genotoxicity in the therapeutic modification of stem cells. Stem Cells. 2011;29(10):1479–84.CrossRefPubMed
72.
73.
go back to reference Tommasi S, Zheng A, Yoon JI, et al. Epigenetic targeting of the Nanog pathway and signaling networks during chemical carcinogenesis. Carcinogenesis. 2014;35(8):1726–36.CrossRefPubMed Tommasi S, Zheng A, Yoon JI, et al. Epigenetic targeting of the Nanog pathway and signaling networks during chemical carcinogenesis. Carcinogenesis. 2014;35(8):1726–36.CrossRefPubMed
74.
go back to reference Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol. 2010;28(10):1057–68.CrossRefPubMed Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol. 2010;28(10):1057–68.CrossRefPubMed
75.
go back to reference Chappell G, Pogribny IP, Guyton KZ, et al. Epigenetic alterations induced by genotoxic occupational and environmental human chemical carcinogens: a systematic literature review. Mutat Res Rev Mutat Res. 2016;768:27–45.CrossRefPubMedCentralPubMed Chappell G, Pogribny IP, Guyton KZ, et al. Epigenetic alterations induced by genotoxic occupational and environmental human chemical carcinogens: a systematic literature review. Mutat Res Rev Mutat Res. 2016;768:27–45.CrossRefPubMedCentralPubMed
76.
go back to reference Shyamasundar S, Ng CT, Yung LY, et al. Epigenetic mechanisms in nanomaterial-induced toxicity. Epigenomics. 2015;7(3):395–411.CrossRefPubMed Shyamasundar S, Ng CT, Yung LY, et al. Epigenetic mechanisms in nanomaterial-induced toxicity. Epigenomics. 2015;7(3):395–411.CrossRefPubMed
80.
go back to reference Torres IO, Fujimori DG. Functional coupling between writers, erasers and readers of histone and DNA methylation. Curr Opin Struct Biol. 2015;35:68–75.CrossRefPubMedCentralPubMed Torres IO, Fujimori DG. Functional coupling between writers, erasers and readers of histone and DNA methylation. Curr Opin Struct Biol. 2015;35:68–75.CrossRefPubMedCentralPubMed
81.
go back to reference Mund C, Lyko F. Epigenetic cancer therapy: proof of concept and remaining challenges. Bioessays. 2010;32(11):949–57.CrossRefPubMed Mund C, Lyko F. Epigenetic cancer therapy: proof of concept and remaining challenges. Bioessays. 2010;32(11):949–57.CrossRefPubMed
82.
go back to reference Watson RE, McKim JM, Cockerell GL, et al. The value of DNA methylation analysis in basic, initial toxicity assessments. Toxicol Sci. 2004;79(1):178–88.CrossRefPubMed Watson RE, McKim JM, Cockerell GL, et al. The value of DNA methylation analysis in basic, initial toxicity assessments. Toxicol Sci. 2004;79(1):178–88.CrossRefPubMed
84.
go back to reference Luzhna L, Kathiria P, Kovalchuk O. Micronuclei in genotoxicity assessment: from genetics to epigenetics and beyond. Front Genet. 2013;11(4):131. Luzhna L, Kathiria P, Kovalchuk O. Micronuclei in genotoxicity assessment: from genetics to epigenetics and beyond. Front Genet. 2013;11(4):131.
85.
go back to reference Chen RJ, Chang LW, Lin P, et al. Epigenetic effects and molecular mechanisms of tumorigenesis induced by cigarette smoke: an overview. J Oncol. 2011;2011:654931.CrossRefPubMedCentralPubMed Chen RJ, Chang LW, Lin P, et al. Epigenetic effects and molecular mechanisms of tumorigenesis induced by cigarette smoke: an overview. J Oncol. 2011;2011:654931.CrossRefPubMedCentralPubMed
86.
go back to reference Nadiminty N, Lou W, Lee SO, et al. Stat3 activation of NF-κB p100 processing involves CBP/p300-mediated acetylation. Proc Natl Acad Sci USA. 2006;103(19):7264–9.CrossRefPubMedCentralPubMed Nadiminty N, Lou W, Lee SO, et al. Stat3 activation of NF-κB p100 processing involves CBP/p300-mediated acetylation. Proc Natl Acad Sci USA. 2006;103(19):7264–9.CrossRefPubMedCentralPubMed
87.
go back to reference Gordon MW, Yan F, Zhong X, et al. Regulation of p53-targeting microRNAs by polycyclic aromatic hydrocarbons: implications in the etiology of multiple myeloma. Mol Carcinog. 2015;54(10):1060–9.CrossRefPubMed Gordon MW, Yan F, Zhong X, et al. Regulation of p53-targeting microRNAs by polycyclic aromatic hydrocarbons: implications in the etiology of multiple myeloma. Mol Carcinog. 2015;54(10):1060–9.CrossRefPubMed
88.
go back to reference Rieswijk L, Brauers KJ, Coonen ML, et al. Evaluating microRNA profiles reveals discriminative responses following genotoxic or non-genotoxic carcinogen exposure in primary mouse hepatocytes. Mutagenesis. 2015;30(6):771–84.CrossRefPubMed Rieswijk L, Brauers KJ, Coonen ML, et al. Evaluating microRNA profiles reveals discriminative responses following genotoxic or non-genotoxic carcinogen exposure in primary mouse hepatocytes. Mutagenesis. 2015;30(6):771–84.CrossRefPubMed
89.
go back to reference Yang P, Ma J, Zhang B, et al. CpG site-specific hypermethylation of p16INK4α in peripheral blood lymphocytes of PAH-exposed workers. Cancer Epidemiol Biomark Prev. 2012;21(1):182–90.CrossRef Yang P, Ma J, Zhang B, et al. CpG site-specific hypermethylation of p16INK4α in peripheral blood lymphocytes of PAH-exposed workers. Cancer Epidemiol Biomark Prev. 2012;21(1):182–90.CrossRef
90.
go back to reference de Planque MR, Aghdaei S, Roose T, et al. Electrophysiological characterization of membrane disruption by nanoparticles. ACS Nano. 2011;5(5):3599–606.CrossRefPubMed de Planque MR, Aghdaei S, Roose T, et al. Electrophysiological characterization of membrane disruption by nanoparticles. ACS Nano. 2011;5(5):3599–606.CrossRefPubMed
91.
go back to reference Yauk C, Polyzos A, Rowan-Carroll A, et al. Germ-line mutations, DNA damage, and global hypermethylation in mice exposed to particulate air pollution in an urban/industrial location. Proc Natl Acad Sci USA. 2008;105(2):605–10.CrossRefPubMedCentralPubMed Yauk C, Polyzos A, Rowan-Carroll A, et al. Germ-line mutations, DNA damage, and global hypermethylation in mice exposed to particulate air pollution in an urban/industrial location. Proc Natl Acad Sci USA. 2008;105(2):605–10.CrossRefPubMedCentralPubMed
92.
go back to reference Nadeau K, McDonald-Hyman C, Noth EM, et al. Ambient air pollution impairs regulatory T-cell function in asthma. J Allergy Clin Immunol. 2010;126(4):845–852.e10.CrossRefPubMed Nadeau K, McDonald-Hyman C, Noth EM, et al. Ambient air pollution impairs regulatory T-cell function in asthma. J Allergy Clin Immunol. 2010;126(4):845–852.e10.CrossRefPubMed
93.
go back to reference Faraoni I, Antonetti FR, Cardone J, et al. miR-155 gene: a typical multifunctional microRNA. Biochim Biophys Acta. 2009;1792(6):497–505.CrossRefPubMed Faraoni I, Antonetti FR, Cardone J, et al. miR-155 gene: a typical multifunctional microRNA. Biochim Biophys Acta. 2009;1792(6):497–505.CrossRefPubMed
94.
go back to reference Chew WS, Poh KW, Siddiqi NJ, et al. Short- and long-term changes in blood miRNA levels after nanogold injection in rats—potential biomarkers of nanoparticle exposure. Biomarkers. 2012;17(8):750–7.CrossRefPubMed Chew WS, Poh KW, Siddiqi NJ, et al. Short- and long-term changes in blood miRNA levels after nanogold injection in rats—potential biomarkers of nanoparticle exposure. Biomarkers. 2012;17(8):750–7.CrossRefPubMed
Metadata
Title
The various aspects of genetic and epigenetic toxicology: testing methods and clinical applications
Authors
Ning Ren
Manar Atyah
Wan-Yong Chen
Chen-Hao Zhou
Publication date
01-12-2017
Publisher
BioMed Central
Published in
Journal of Translational Medicine / Issue 1/2017
Electronic ISSN: 1479-5876
DOI
https://doi.org/10.1186/s12967-017-1218-4

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