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Published in: Journal of Translational Medicine 1/2017

Open Access 01-12-2017 | Methodology

Realising stratified psychiatry using multidimensional signatures and trajectories

Authors: Dan W. Joyce, Angie A. Kehagia, Derek K. Tracy, Jessica Proctor, Sukhwinder S. Shergill

Published in: Journal of Translational Medicine | Issue 1/2017

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Abstract

Background

Stratified or personalised medicine targets treatments for groups of individuals with a disorder based on individual heterogeneity and shared factors that influence the likelihood of response. Psychiatry has traditionally defined diagnoses by constellations of co-occurring signs and symptoms that are assigned a categorical label (e.g. schizophrenia). Trial methodology in psychiatry has evaluated interventions targeted at these categorical entities, with diagnoses being equated to disorders. Recent insights into both the nosology and neurobiology of psychiatric disorder reveal that traditional categorical diagnoses cannot be equated with disorders. We argue that current quantitative methodology (1) inherits these categorical assumptions, (2) allows only for the discovery of average treatment response, (3) relies on composite outcome measures and (4) sacrifices valuable predictive information for stratified and personalised treatment in psychiatry.

Methods and findings

To achieve a truly ‘stratified psychiatry’ we propose and then operationalise two necessary steps: first, a formal multi-dimensional representation of disorder definition and clinical state, and second, the similar redefinition of outcomes as multidimensional constructs that can expose within- and between-patient differences in response. We use the categorical diagnosis of schizophrenia—conceptualised as a label for heterogeneous disorders—as a means of introducing operational definitions of stratified psychiatry using principles from multivariate analysis. We demonstrate this framework by application to the Clinical Antipsychotic Trials of Intervention Effectiveness dataset, showing heterogeneity in both patient clinical states and their trajectories after treatment that are lost in the traditional categorical approach with composite outcomes. We then systematically review a decade of registered clinical trials for cognitive deficits in schizophrenia highlighting existing assumptions of categorical diagnoses and aggregate outcomes while identifying a small number of trials that could be reanalysed using our proposal.

Conclusion

We describe quantitative methods for the development of a multi-dimensional model of clinical state, disorders and trajectories which practically realises stratified psychiatry. We highlight the potential for recovering existing trial data, the implications for stratified psychiatry in trial design and clinical treatment and finally, describe different kinds of probabilistic reasoning tools necessary to implement stratification.
Literature
1.
go back to reference World Health Organisation. The ICD-10 classification of mental and behavioural disorders: clinical descriptions and diagnostic guidelines. 10th ed. Geneva: World Health Organisation; 1992. World Health Organisation. The ICD-10 classification of mental and behavioural disorders: clinical descriptions and diagnostic guidelines. 10th ed. Geneva: World Health Organisation; 1992.
2.
go back to reference American Psychiatric Association. Diagnostic and Statistical Manual of Mental Disorders, 5th Edition (DSM-5). Diagnostic Stat. Man. Ment. Disord. 4th Ed. TR. 2013. American Psychiatric Association. Diagnostic and Statistical Manual of Mental Disorders, 5th Edition (DSM-5). Diagnostic Stat. Man. Ment. Disord. 4th Ed. TR. 2013.
3.
go back to reference Insel TR, Cuthbert BN, Whiteford HA, Collins FS, Varmus H, Insel T, et al. Brain disorders? Precisely. Science. 2015;348:499–500.PubMedCrossRef Insel TR, Cuthbert BN, Whiteford HA, Collins FS, Varmus H, Insel T, et al. Brain disorders? Precisely. Science. 2015;348:499–500.PubMedCrossRef
4.
go back to reference Cuthbert BN, Kozak MJ. Constructing constructs for psychopathology: the NIMH research domain criteria. J Abnorm Psychol. 2013;122:928–37.PubMedCrossRef Cuthbert BN, Kozak MJ. Constructing constructs for psychopathology: the NIMH research domain criteria. J Abnorm Psychol. 2013;122:928–37.PubMedCrossRef
5.
go back to reference Insel T, Cuthbert B, Garvey M, Heinssen R, Pine DS, Quinn K, et al. Research domain criteria (RDoC): toward a new classification framework for research on mental disorders. Am J Psychiatry. 2010;167:748–51.PubMedCrossRef Insel T, Cuthbert B, Garvey M, Heinssen R, Pine DS, Quinn K, et al. Research domain criteria (RDoC): toward a new classification framework for research on mental disorders. Am J Psychiatry. 2010;167:748–51.PubMedCrossRef
6.
go back to reference Morris SE, Cuthbert BN. Research domain criteria: cognitive systems, neural circuits, and dimensions of behavior. Dialogues Clin Neurosci. 2012;14:29–37.PubMedPubMedCentral Morris SE, Cuthbert BN. Research domain criteria: cognitive systems, neural circuits, and dimensions of behavior. Dialogues Clin Neurosci. 2012;14:29–37.PubMedPubMedCentral
7.
go back to reference Sanislow CA, Pine DS, Quinn KJ, Kozak MJ, Garvey MA, Heinssen RK, et al. Developing constructs for psychopathology research: research domain criteria. J Abnorm Psychol. 2010;119:631–9.PubMedCrossRef Sanislow CA, Pine DS, Quinn KJ, Kozak MJ, Garvey MA, Heinssen RK, et al. Developing constructs for psychopathology research: research domain criteria. J Abnorm Psychol. 2010;119:631–9.PubMedCrossRef
8.
go back to reference Simmons JM, Quinn KJ. The NIMH research domain criteria (RDoC) Project: implications for genetics research. Mamm Genome. 2014;25:23–31.PubMedCrossRef Simmons JM, Quinn KJ. The NIMH research domain criteria (RDoC) Project: implications for genetics research. Mamm Genome. 2014;25:23–31.PubMedCrossRef
9.
go back to reference Schumann G, Binder EB, Holte A, de Kloet ER, Oedegaard KJ, Robbins TW, et al. Stratified medicine for mental disorders. Eur Neuropsychopharmacol. 2014;24:5–50.PubMedCrossRef Schumann G, Binder EB, Holte A, de Kloet ER, Oedegaard KJ, Robbins TW, et al. Stratified medicine for mental disorders. Eur Neuropsychopharmacol. 2014;24:5–50.PubMedCrossRef
10.
go back to reference Chekroud AM, Zotti RJ, Shehzad Z, Gueorguieva R, Johnson MK, Trivedi MH, et al. Cross-trial prediction of treatment outcome in depression: a machine learning approach. Lancet Psychiatry. 2016;3:243–50.PubMedCrossRef Chekroud AM, Zotti RJ, Shehzad Z, Gueorguieva R, Johnson MK, Trivedi MH, et al. Cross-trial prediction of treatment outcome in depression: a machine learning approach. Lancet Psychiatry. 2016;3:243–50.PubMedCrossRef
11.
go back to reference Iniesta R, Malki K, Maier W, Rietschel M, Mors O, Hauser J, et al. Combining clinical variables to optimize prediction of antidepressant treatment outcomes. J Psychiatr Res. 2016;78:94–102.PubMedCrossRef Iniesta R, Malki K, Maier W, Rietschel M, Mors O, Hauser J, et al. Combining clinical variables to optimize prediction of antidepressant treatment outcomes. J Psychiatr Res. 2016;78:94–102.PubMedCrossRef
12.
go back to reference Wallace ML, Frank E, Kraemer HC. A novel approach for developing and interpreting treatment moderator profiles in randomized clinical trials. JAMA Psychiatry. 2013;70:1241–7.PubMedCrossRef Wallace ML, Frank E, Kraemer HC. A novel approach for developing and interpreting treatment moderator profiles in randomized clinical trials. JAMA Psychiatry. 2013;70:1241–7.PubMedCrossRef
13.
go back to reference Ahn W-Y, Ramesh D, Moeller FG, Vassileva J. Utility of machine-learning approaches to identify behavioral markers for substance use disorders: impulsivity dimensions as predictors of current cocaine dependence. Front Psychiatry. 2016;7:1–11.CrossRef Ahn W-Y, Ramesh D, Moeller FG, Vassileva J. Utility of machine-learning approaches to identify behavioral markers for substance use disorders: impulsivity dimensions as predictors of current cocaine dependence. Front Psychiatry. 2016;7:1–11.CrossRef
14.
go back to reference Ruderfer DM, Charney AW, Readhead B, Kidd BA, Kähler AK, Kenny PJ, et al. Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach. Lancet Psychiatry. 2016;3:350–7.PubMedCrossRef Ruderfer DM, Charney AW, Readhead B, Kidd BA, Kähler AK, Kenny PJ, et al. Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach. Lancet Psychiatry. 2016;3:350–7.PubMedCrossRef
15.
go back to reference Meier MH, Caspi A, Reichenberg A, Keefe RSE, Fisher HL, Harrington H, et al. Neuropsychological decline in schizophrenia from the premorbid to the postonset period: evidence from a population-representative longitudinal study. Am J Psychiatry. 2014;171:91–101.PubMedPubMedCentralCrossRef Meier MH, Caspi A, Reichenberg A, Keefe RSE, Fisher HL, Harrington H, et al. Neuropsychological decline in schizophrenia from the premorbid to the postonset period: evidence from a population-representative longitudinal study. Am J Psychiatry. 2014;171:91–101.PubMedPubMedCentralCrossRef
16.
go back to reference Green MF, Kern RS, Heaton RK. Longitudinal studies of cognition and functional outcome in schizophrenia: implications for MATRICS. Schizophr Res. 2004;72:41–51.PubMedCrossRef Green MF, Kern RS, Heaton RK. Longitudinal studies of cognition and functional outcome in schizophrenia: implications for MATRICS. Schizophr Res. 2004;72:41–51.PubMedCrossRef
17.
go back to reference Gøtzsche PC. Rational diagnosis and treatment: evidence-based clinical decision making. 4th ed. New York: Wiley; 2007. Gøtzsche PC. Rational diagnosis and treatment: evidence-based clinical decision making. 4th ed. New York: Wiley; 2007.
18.
go back to reference Moriyama IM, Loy RM, Robb-Smith AHTR. History of the statistical classification of diseases and causes of death. Hyattsville: National Center for Health Statistics; 2011. Moriyama IM, Loy RM, Robb-Smith AHTR. History of the statistical classification of diseases and causes of death. Hyattsville: National Center for Health Statistics; 2011.
19.
go back to reference Kawa S, Giordano J. A brief historicity of the Diagnostic and Statistical Manual of Mental Disorders: issues and implications for the future of psychiatric canon and practice. Philos Ethics Humanit Med. 2012;7:1.CrossRef Kawa S, Giordano J. A brief historicity of the Diagnostic and Statistical Manual of Mental Disorders: issues and implications for the future of psychiatric canon and practice. Philos Ethics Humanit Med. 2012;7:1.CrossRef
20.
go back to reference Kinch MS, Patridge E. An analysis of FDA-approved drugs for psychiatric disorders. Drug Discov Today. 2015;20:292–5.PubMedCrossRef Kinch MS, Patridge E. An analysis of FDA-approved drugs for psychiatric disorders. Drug Discov Today. 2015;20:292–5.PubMedCrossRef
21.
go back to reference Berrios GE. Classifications in psychiatry: a conceptual history. Aust N Z J Psychiatry. 1999;33:145–60.PubMedCrossRef Berrios GE. Classifications in psychiatry: a conceptual history. Aust N Z J Psychiatry. 1999;33:145–60.PubMedCrossRef
23.
go back to reference Burdick KE, Goldberg TE, Funke B, Bates JA, Lencz T, Kucherlapati R, et al. DTNBP1 genotype influences cognitive decline in schizophrenia. Schizophr Res. 2007;89:169–72.PubMedCrossRef Burdick KE, Goldberg TE, Funke B, Bates JA, Lencz T, Kucherlapati R, et al. DTNBP1 genotype influences cognitive decline in schizophrenia. Schizophr Res. 2007;89:169–72.PubMedCrossRef
24.
go back to reference Weickert TW, Goldberg TE, Mishara A, Apud JA, Kolachana BS, Egan MF, et al. Catechol-O-methyltransferase val 108/158met genotype predicts working memory response to antipsychotic medications. Biol Psychiatry. 2004;56:677–82.PubMedCrossRef Weickert TW, Goldberg TE, Mishara A, Apud JA, Kolachana BS, Egan MF, et al. Catechol-O-methyltransferase val 108/158met genotype predicts working memory response to antipsychotic medications. Biol Psychiatry. 2004;56:677–82.PubMedCrossRef
25.
go back to reference Tan HY, Callicott JH, Weinberger DR. Dysfunctional and compensatory prefrontal cortical systems, genes and the pathogenesis of schizophrenia. Cereb Cortex. 2007;17:i171–81.PubMedCrossRef Tan HY, Callicott JH, Weinberger DR. Dysfunctional and compensatory prefrontal cortical systems, genes and the pathogenesis of schizophrenia. Cereb Cortex. 2007;17:i171–81.PubMedCrossRef
26.
go back to reference Egan MF, Goldberg TE, Kolachana BS, Callicott JH, Mazzanti CM, Straub RE, et al. Effect of COMT Val108/158 Met genotype on frontal lobe function and risk for schizophrenia. Proc Natl Acad Sci USA. 2001;98:6917–22.PubMedPubMedCentralCrossRef Egan MF, Goldberg TE, Kolachana BS, Callicott JH, Mazzanti CM, Straub RE, et al. Effect of COMT Val108/158 Met genotype on frontal lobe function and risk for schizophrenia. Proc Natl Acad Sci USA. 2001;98:6917–22.PubMedPubMedCentralCrossRef
27.
go back to reference Rebollo-Mesa I, Picchioni M, Shaikh M, Bramon E, Murray R, Toulopoulou T. COMT (Val(158/108)Met) genotype moderates the impact of antipsychotic medication on verbal IQ in twins with schizophrenia. Psychiatr Genet. 2011;21:98–105.PubMedCrossRef Rebollo-Mesa I, Picchioni M, Shaikh M, Bramon E, Murray R, Toulopoulou T. COMT (Val(158/108)Met) genotype moderates the impact of antipsychotic medication on verbal IQ in twins with schizophrenia. Psychiatr Genet. 2011;21:98–105.PubMedCrossRef
28.
go back to reference Potkin SG, Turner JA, Guffanti G, Lakatos A, Fallon JH, Nguyen DD, et al. A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype. Schizophr Bull. 2009;35:96–108.PubMedCrossRef Potkin SG, Turner JA, Guffanti G, Lakatos A, Fallon JH, Nguyen DD, et al. A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype. Schizophr Bull. 2009;35:96–108.PubMedCrossRef
29.
go back to reference Schizophrenia Working Group of the Psychiatric Genomics Consortium SWG of the PG, Ripke S, Neale BM, Corvin A, Walters JTR, Farh K-H, Holmans PA, et al. Biological insights from 108 schizophrenia-associated genetic loci. Nature. 2014;511:421–7.CrossRef Schizophrenia Working Group of the Psychiatric Genomics Consortium SWG of the PG, Ripke S, Neale BM, Corvin A, Walters JTR, Farh K-H, Holmans PA, et al. Biological insights from 108 schizophrenia-associated genetic loci. Nature. 2014;511:421–7.CrossRef
30.
go back to reference Treutlein J, Mühleisen TW, Frank J, Mattheisen M, Herms S, Ludwig KU, et al. Dissection of phenotype reveals possible association between schizophrenia and Glutamate Receptor Delta 1 (GRID1) gene promoter. Schizophr Res. 2009;111:123–30.PubMedCrossRef Treutlein J, Mühleisen TW, Frank J, Mattheisen M, Herms S, Ludwig KU, et al. Dissection of phenotype reveals possible association between schizophrenia and Glutamate Receptor Delta 1 (GRID1) gene promoter. Schizophr Res. 2009;111:123–30.PubMedCrossRef
31.
go back to reference Wessman J, Paunio T, Tuulio-Henriksson A, Koivisto M, Partonen T, Suvisaari J, et al. Mixture model clustering of phenotype features reveals evidence for association of DTNBP1 to a specific subtype of schizophrenia. Biol Psychiatry. 2009;66:990–6.PubMedCrossRef Wessman J, Paunio T, Tuulio-Henriksson A, Koivisto M, Partonen T, Suvisaari J, et al. Mixture model clustering of phenotype features reveals evidence for association of DTNBP1 to a specific subtype of schizophrenia. Biol Psychiatry. 2009;66:990–6.PubMedCrossRef
33.
go back to reference Murray RM, Sham P, Van Os J, Zanelli J, Cannon M, McDonald C. A developmental model for similarities and dissimilarities between schizophrenia and bipolar disorder. Schizophr Res. 2004;71:405–16.PubMedCrossRef Murray RM, Sham P, Van Os J, Zanelli J, Cannon M, McDonald C. A developmental model for similarities and dissimilarities between schizophrenia and bipolar disorder. Schizophr Res. 2004;71:405–16.PubMedCrossRef
34.
go back to reference Walker J, Curtis V, Murray RM. Schizophrenia and bipolar disorder: similarities in pathogenic mechanisms but differences in neurodevelopment. Int Clin Psychopharmacol. 2002;17(Suppl 3):S11–9.PubMed Walker J, Curtis V, Murray RM. Schizophrenia and bipolar disorder: similarities in pathogenic mechanisms but differences in neurodevelopment. Int Clin Psychopharmacol. 2002;17(Suppl 3):S11–9.PubMed
35.
go back to reference Demjaha A, MacCabe JH, Murray RM. How genes and environmental factors determine the different neurodevelopmental trajectories of schizophrenia and bipolar disorder. Schizophr Bull. 2012;38:209–14.PubMedCrossRef Demjaha A, MacCabe JH, Murray RM. How genes and environmental factors determine the different neurodevelopmental trajectories of schizophrenia and bipolar disorder. Schizophr Bull. 2012;38:209–14.PubMedCrossRef
36.
go back to reference Barnow S, Arens EA, Sieswerda S, Dinu-Biringer R, Spitzer C, Lang S. Borderline personality disorder and psychosis: a review. Curr Psychiatry Rep. 2010;12:186–95.PubMedCrossRef Barnow S, Arens EA, Sieswerda S, Dinu-Biringer R, Spitzer C, Lang S. Borderline personality disorder and psychosis: a review. Curr Psychiatry Rep. 2010;12:186–95.PubMedCrossRef
37.
go back to reference Schroeder K, Fisher HL, Schäfer I. Psychotic symptoms in patients with borderline personality disorder: prevalence and clinical management. Curr Opin Psychiatry. 2013;26:113–9.PubMedCrossRef Schroeder K, Fisher HL, Schäfer I. Psychotic symptoms in patients with borderline personality disorder: prevalence and clinical management. Curr Opin Psychiatry. 2013;26:113–9.PubMedCrossRef
38.
go back to reference Glaser JP, Van Os J, Thewissen V, Myin-Germeys I. Psychotic reactivity in borderline personality disorder. Acta Psychiatr Scand. 2010;121:125–34.PubMedCrossRef Glaser JP, Van Os J, Thewissen V, Myin-Germeys I. Psychotic reactivity in borderline personality disorder. Acta Psychiatr Scand. 2010;121:125–34.PubMedCrossRef
39.
go back to reference Nishizono-Maher A, Ikuta N, Ogiso Y, Moriya N, Miyake Y, Minakawa K. Psychotic symptoms in depression and borderline personality disorder. J Affect Disord. 1993;28:279–85.PubMedCrossRef Nishizono-Maher A, Ikuta N, Ogiso Y, Moriya N, Miyake Y, Minakawa K. Psychotic symptoms in depression and borderline personality disorder. J Affect Disord. 1993;28:279–85.PubMedCrossRef
40.
go back to reference Annen S, Roser P, Brüne M. Nonverbal behavior during clinical interviews: similarities and dissimilarities among schizophrenia, mania, and depression. J Nerv Ment Dis. 2012;200:26–32.PubMedCrossRef Annen S, Roser P, Brüne M. Nonverbal behavior during clinical interviews: similarities and dissimilarities among schizophrenia, mania, and depression. J Nerv Ment Dis. 2012;200:26–32.PubMedCrossRef
41.
go back to reference Keshavan MS, Morris DW, Sweeney JA, Pearlson G, Thaker G, Seidman LJ, et al. A dimensional approach to the psychosis spectrum between bipolar disorder and schizophrenia: the Schizo-Bipolar Scale. Schizophr Res. 2011;133:250–4.PubMedPubMedCentralCrossRef Keshavan MS, Morris DW, Sweeney JA, Pearlson G, Thaker G, Seidman LJ, et al. A dimensional approach to the psychosis spectrum between bipolar disorder and schizophrenia: the Schizo-Bipolar Scale. Schizophr Res. 2011;133:250–4.PubMedPubMedCentralCrossRef
42.
go back to reference Jabben N, Arts B, Krabbendam L, Van Os J. Investigating the association between neurocognition and psychosis in bipolar disorder: further evidence for the overlap with schizophrenia. Bipolar Disord. 2009;11:166–77.PubMedCrossRef Jabben N, Arts B, Krabbendam L, Van Os J. Investigating the association between neurocognition and psychosis in bipolar disorder: further evidence for the overlap with schizophrenia. Bipolar Disord. 2009;11:166–77.PubMedCrossRef
43.
go back to reference Green MF. Cognitive impairment and functional outcome in schizophrenia and bipolar disorder. J Clin Psychiatry. 2006;67:3–8.PubMedCrossRef Green MF. Cognitive impairment and functional outcome in schizophrenia and bipolar disorder. J Clin Psychiatry. 2006;67:3–8.PubMedCrossRef
44.
go back to reference Lichtenstein P, Yip BH, Björk C, Pawitan Y, Cannon TD, Sullivan PF, et al. Common genetic determinants of schizophrenia and bipolar disorder in Swedish families: a population-based study. Lancet. 2009;373:234–9.PubMedCrossRef Lichtenstein P, Yip BH, Björk C, Pawitan Y, Cannon TD, Sullivan PF, et al. Common genetic determinants of schizophrenia and bipolar disorder in Swedish families: a population-based study. Lancet. 2009;373:234–9.PubMedCrossRef
45.
go back to reference Craddock N, O’Donovan MC, Owen MJ. Psychosis genetics: modeling the relationship between schizophrenia, bipolar disorder and mixed (or “schizoaffective”) psychoses. Schizophr Bull. 2009;35:482–90.PubMedPubMedCentralCrossRef Craddock N, O’Donovan MC, Owen MJ. Psychosis genetics: modeling the relationship between schizophrenia, bipolar disorder and mixed (or “schizoaffective”) psychoses. Schizophr Bull. 2009;35:482–90.PubMedPubMedCentralCrossRef
46.
go back to reference Purcell SM, Wray NR, Stone JL, Visscher PM, O’Donovan MC, Sullivan PF, et al. Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature. 2009;460:748–52.PubMed Purcell SM, Wray NR, Stone JL, Visscher PM, O’Donovan MC, Sullivan PF, et al. Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature. 2009;460:748–52.PubMed
47.
go back to reference Reininghaus U, Böhnke JR, Hosang G, Farmer A, Burns T, McGuffin P, et al. Evaluation of the validity and utility of a transdiagnostic psychosis dimension encompassing schizophrenia and bipolar disorder. Br J Psychiatry. 2016;209:107–13.PubMedCrossRef Reininghaus U, Böhnke JR, Hosang G, Farmer A, Burns T, McGuffin P, et al. Evaluation of the validity and utility of a transdiagnostic psychosis dimension encompassing schizophrenia and bipolar disorder. Br J Psychiatry. 2016;209:107–13.PubMedCrossRef
48.
go back to reference Allardyce J, Suppes T, Van Os J. Dimensions and the psychosis phenotype. Int J Methods Psychiatr Res. 2007;16:S34–40.PubMedCrossRef Allardyce J, Suppes T, Van Os J. Dimensions and the psychosis phenotype. Int J Methods Psychiatr Res. 2007;16:S34–40.PubMedCrossRef
49.
go back to reference Demjaha A, Morgan K, Morgan C, Landau S, Dean K, Reichenberg A, et al. Combining dimensional and categorical representation of psychosis: the way forward for DSM-V and ICD-11? Psychol Med. 2009;39:1943–55.PubMedCrossRef Demjaha A, Morgan K, Morgan C, Landau S, Dean K, Reichenberg A, et al. Combining dimensional and categorical representation of psychosis: the way forward for DSM-V and ICD-11? Psychol Med. 2009;39:1943–55.PubMedCrossRef
50.
go back to reference Goldberg D. The overlap between the common mental disorders—challenges for classification. Int Rev Psychiatry. 2012;24:549–55.PubMedCrossRef Goldberg D. The overlap between the common mental disorders—challenges for classification. Int Rev Psychiatry. 2012;24:549–55.PubMedCrossRef
51.
go back to reference Djulbegovic B, Paul A, Uk F. From efficacy to effectiveness in the face of uncertainty. JAMA. 2011;305:2005–6.PubMed Djulbegovic B, Paul A, Uk F. From efficacy to effectiveness in the face of uncertainty. JAMA. 2011;305:2005–6.PubMed
52.
go back to reference Gong Q, Li L, Du M, Pettersson-Yeo W, Crossley N, Yang X, et al. Quantitative prediction of individual psychopathology in trauma survivors using resting-state FMRI. Neuropsychopharmacology. 2014;39:681–7.PubMedCrossRef Gong Q, Li L, Du M, Pettersson-Yeo W, Crossley N, Yang X, et al. Quantitative prediction of individual psychopathology in trauma survivors using resting-state FMRI. Neuropsychopharmacology. 2014;39:681–7.PubMedCrossRef
53.
go back to reference Ziermans T, de Wit S, Schothorst P, Sprong M, van Engeland H, Kahn R, et al. Neurocognitive and clinical predictors of long-term outcome in adolescents at ultra-high risk for psychosis: a 6-year follow-up. PLoS ONE. 2014;9:e93994.PubMedPubMedCentralCrossRef Ziermans T, de Wit S, Schothorst P, Sprong M, van Engeland H, Kahn R, et al. Neurocognitive and clinical predictors of long-term outcome in adolescents at ultra-high risk for psychosis: a 6-year follow-up. PLoS ONE. 2014;9:e93994.PubMedPubMedCentralCrossRef
54.
go back to reference Young N. An introduction to Hilbert space. Cambridge: Cambridge University Press; 1988.CrossRef Young N. An introduction to Hilbert space. Cambridge: Cambridge University Press; 1988.CrossRef
55.
go back to reference Semmes S. An introduction to analysis on metric spaces. N Am Math Soc. 2004;50:438–43. Semmes S. An introduction to analysis on metric spaces. N Am Math Soc. 2004;50:438–43.
56.
go back to reference Duda RO, Hart PE, Stork DG. Pattern classification. New York: Wiley; 2000. Duda RO, Hart PE, Stork DG. Pattern classification. New York: Wiley; 2000.
57.
go back to reference Hastie T, Tibshirani R, Friedman J. The elements of statistical learning. 2nd ed. New York: Springer; 2009.CrossRef Hastie T, Tibshirani R, Friedman J. The elements of statistical learning. 2nd ed. New York: Springer; 2009.CrossRef
59.
go back to reference Fisher RA. The use of multiple measurements in taxonomic problems. Ann Eugen. 1936;7:179–88.CrossRef Fisher RA. The use of multiple measurements in taxonomic problems. Ann Eugen. 1936;7:179–88.CrossRef
60.
go back to reference McCullagh P, Nelder JA. Generalized linear models. 2nd ed. Boca Raton: Chapman & Hall/CRC; 1989.CrossRef McCullagh P, Nelder JA. Generalized linear models. 2nd ed. Boca Raton: Chapman & Hall/CRC; 1989.CrossRef
61.
go back to reference Cortes C, Vapnik V. Support vector networks. Mach Learn. 1995;20:273–97. Cortes C, Vapnik V. Support vector networks. Mach Learn. 1995;20:273–97.
62.
go back to reference Rasmussen CE, Williams CKI. Gaussian processes for machine learning. Cambridge: The MIT Press; 2005. Rasmussen CE, Williams CKI. Gaussian processes for machine learning. Cambridge: The MIT Press; 2005.
63.
go back to reference Rodriguez A, Laio A. Clustering by fast search and find of density peaks. Science. 2014;344:1492–6.PubMedCrossRef Rodriguez A, Laio A. Clustering by fast search and find of density peaks. Science. 2014;344:1492–6.PubMedCrossRef
64.
go back to reference Koutsouleris N, Kahn RS, Chekroud AM, Leucht S, Falkai P, Wobrock T, et al. Multisite prediction of 4-week and 52-week treatment outcomes in patients with first-episode psychosis: a machine learning approach. Lancet Psychiatry. 2016;3:935–46.PubMedCrossRef Koutsouleris N, Kahn RS, Chekroud AM, Leucht S, Falkai P, Wobrock T, et al. Multisite prediction of 4-week and 52-week treatment outcomes in patients with first-episode psychosis: a machine learning approach. Lancet Psychiatry. 2016;3:935–46.PubMedCrossRef
65.
go back to reference Galatzer-Levy IR, Karstoft K-I, Statnikov A, Shalev AY. Quantitative forecasting of PTSD from early trauma responses: a machine learning application. J Psychiatr Res. 2014;59:68–76.PubMedPubMedCentralCrossRef Galatzer-Levy IR, Karstoft K-I, Statnikov A, Shalev AY. Quantitative forecasting of PTSD from early trauma responses: a machine learning application. J Psychiatr Res. 2014;59:68–76.PubMedPubMedCentralCrossRef
66.
go back to reference Orrù G, Pettersson-Yeo W, Marquand AF, Sartori G, Mechelli A. Using support vector machine to identify imaging biomarkers of neurological and psychiatric disease: a critical review. Neurosci Biobehav Rev. 2012;36:1140–52.PubMedCrossRef Orrù G, Pettersson-Yeo W, Marquand AF, Sartori G, Mechelli A. Using support vector machine to identify imaging biomarkers of neurological and psychiatric disease: a critical review. Neurosci Biobehav Rev. 2012;36:1140–52.PubMedCrossRef
67.
go back to reference Koutsouleris N, Meisenzahl EM, Davatzikos C, Bottlender R, Frodl T, Scheuerecker J, et al. Use of neuroanatomical pattern classification to identify subjects in at-risk mental states of psychosis and predict disease transition. Arch Gen Psychiatry. 2009;66:700.PubMedPubMedCentralCrossRef Koutsouleris N, Meisenzahl EM, Davatzikos C, Bottlender R, Frodl T, Scheuerecker J, et al. Use of neuroanatomical pattern classification to identify subjects in at-risk mental states of psychosis and predict disease transition. Arch Gen Psychiatry. 2009;66:700.PubMedPubMedCentralCrossRef
68.
go back to reference Khodayari-Rostamabad A, Hasey GM, MacCrimmon DJ, Reilly JP, de Bruin H. A pilot study to determine whether machine learning methodologies using pre-treatment electroencephalography can predict the symptomatic response to clozapine therapy. Clin Neurophysiol. 2010;121:1998–2006.PubMedCrossRef Khodayari-Rostamabad A, Hasey GM, MacCrimmon DJ, Reilly JP, de Bruin H. A pilot study to determine whether machine learning methodologies using pre-treatment electroencephalography can predict the symptomatic response to clozapine therapy. Clin Neurophysiol. 2010;121:1998–2006.PubMedCrossRef
69.
go back to reference Khodayari-Rostamabad A, Reilly JP, Hasey GM, de Bruin H, Maccrimmon DJ. A machine learning approach using EEG data to predict response to SSRI treatment for major depressive disorder. Clin Neurophysiol. 2013;124:1975–85.PubMedCrossRef Khodayari-Rostamabad A, Reilly JP, Hasey GM, de Bruin H, Maccrimmon DJ. A machine learning approach using EEG data to predict response to SSRI treatment for major depressive disorder. Clin Neurophysiol. 2013;124:1975–85.PubMedCrossRef
70.
go back to reference de Wit S, Ziermans TB, Nieuwenhuis M, Schothorst PF, van Engeland H, Kahn RS, et al. Individual prediction of long-term outcome in adolescents at ultra-high risk for psychosis: applying machine learning techniques to brain imaging data. Hum Brain Mapp 2016;38(2):704–14. doi:10.1002/hbm.23410.PubMedCrossRef de Wit S, Ziermans TB, Nieuwenhuis M, Schothorst PF, van Engeland H, Kahn RS, et al. Individual prediction of long-term outcome in adolescents at ultra-high risk for psychosis: applying machine learning techniques to brain imaging data. Hum Brain Mapp 2016;38(2):704–14. doi:10.​1002/​hbm.​23410.PubMedCrossRef
71.
go back to reference Kessler RC, van Loo HM, Wardenaar KJ, Bossarte RM, Brenner LA, Cai T, et al. Testing a machine-learning algorithm to predict the persistence and severity of major depressive disorder from baseline self-reports. Mol Psychiatry. 2016;21:1366–71.PubMedPubMedCentralCrossRef Kessler RC, van Loo HM, Wardenaar KJ, Bossarte RM, Brenner LA, Cai T, et al. Testing a machine-learning algorithm to predict the persistence and severity of major depressive disorder from baseline self-reports. Mol Psychiatry. 2016;21:1366–71.PubMedPubMedCentralCrossRef
72.
go back to reference Berkowitz RL, Patel U, Ni Q, Parks JJ, Docherty JP. The impact of the clinical antipsychotic trials of intervention effectiveness (CATIE) on prescribing practices: an analysis of data from a large midwestern state. J Clin Psychiatry. 2012;73:498–503.PubMedCrossRef Berkowitz RL, Patel U, Ni Q, Parks JJ, Docherty JP. The impact of the clinical antipsychotic trials of intervention effectiveness (CATIE) on prescribing practices: an analysis of data from a large midwestern state. J Clin Psychiatry. 2012;73:498–503.PubMedCrossRef
73.
go back to reference Turner EH, Knoepflmacher D, Shapley L, Dwan K, Altman D, Arnaiz J, et al. Publication bias in antipsychotic trials: an analysis of efficacy comparing the published literature to the US food and Drug Administration database. PLoS Med. 2012;9:e1001189.PubMedPubMedCentralCrossRef Turner EH, Knoepflmacher D, Shapley L, Dwan K, Altman D, Arnaiz J, et al. Publication bias in antipsychotic trials: an analysis of efficacy comparing the published literature to the US food and Drug Administration database. PLoS Med. 2012;9:e1001189.PubMedPubMedCentralCrossRef
74.
go back to reference Goldberg D. Should our major classifications of mental disorders be revised. Br J Psychiatry. 2010;196:255–6.PubMedCrossRef Goldberg D. Should our major classifications of mental disorders be revised. Br J Psychiatry. 2010;196:255–6.PubMedCrossRef
75.
go back to reference Schwarz E, Guest PC, Steiner J, Bogerts B, Bahn S. Identification of blood-based molecular signatures for prediction of response and relapse in schizophrenia patients. Trans Psychiatry. 2012;2:e82.CrossRef Schwarz E, Guest PC, Steiner J, Bogerts B, Bahn S. Identification of blood-based molecular signatures for prediction of response and relapse in schizophrenia patients. Trans Psychiatry. 2012;2:e82.CrossRef
76.
go back to reference Gaebel W, Riesbeck M. Are there clinically useful predictors and early warning signs for pending relapse? Schizophr Res. 2014;152:469–77.PubMedCrossRef Gaebel W, Riesbeck M. Are there clinically useful predictors and early warning signs for pending relapse? Schizophr Res. 2014;152:469–77.PubMedCrossRef
77.
go back to reference Herz MI, Lamberti JS. Prodromal symptoms and relapse prevention in schizophrenia. Schizophr Bull. 1995;21:541–51.PubMedCrossRef Herz MI, Lamberti JS. Prodromal symptoms and relapse prevention in schizophrenia. Schizophr Bull. 1995;21:541–51.PubMedCrossRef
78.
go back to reference Remington G, Foussias G, Agid O, Fervaha G, Takeuchi H, Hahn M. The neurobiology of relapse in schizophrenia. Schizophr Res. 2014;152:381–90.PubMedCrossRef Remington G, Foussias G, Agid O, Fervaha G, Takeuchi H, Hahn M. The neurobiology of relapse in schizophrenia. Schizophr Res. 2014;152:381–90.PubMedCrossRef
80.
go back to reference Moore A, Derry S, Eccleston C, Kalso E. Expect analgesic failure; pursue analgesic success. Br Med J. 2013;346:2690.CrossRef Moore A, Derry S, Eccleston C, Kalso E. Expect analgesic failure; pursue analgesic success. Br Med J. 2013;346:2690.CrossRef
81.
go back to reference Moore RA, Derry S, McQuay HJ, Straube S, Aldington D, Wiffen P, et al. Clinical effectiveness: an approach to clinical trial design more relevant to clinical practice, acknowledging the importance of individual differences. Pain. 2010;149:173–6.PubMedCrossRef Moore RA, Derry S, McQuay HJ, Straube S, Aldington D, Wiffen P, et al. Clinical effectiveness: an approach to clinical trial design more relevant to clinical practice, acknowledging the importance of individual differences. Pain. 2010;149:173–6.PubMedCrossRef
82.
go back to reference McQuay HJ, Derry S, Moore RA, Poulain P, Legout V. Enriched enrolment with randomised withdrawal (EERW): time for a new look at clinical trial design in chronic pain. Pain. 2008;135:217–20.PubMedCrossRef McQuay HJ, Derry S, Moore RA, Poulain P, Legout V. Enriched enrolment with randomised withdrawal (EERW): time for a new look at clinical trial design in chronic pain. Pain. 2008;135:217–20.PubMedCrossRef
83.
go back to reference Toth C, Mawani S, Brady S, Chan C, Liu C, Mehina E, et al. An enriched-enrolment, randomized withdrawal, flexible-dose, double-blind, placebo-controlled, parallel assignment efficacy study of nabilone as adjuvant in the treatment of diabetic peripheral neuropathic pain. Pain. 2012;153:2073–82.PubMedCrossRef Toth C, Mawani S, Brady S, Chan C, Liu C, Mehina E, et al. An enriched-enrolment, randomized withdrawal, flexible-dose, double-blind, placebo-controlled, parallel assignment efficacy study of nabilone as adjuvant in the treatment of diabetic peripheral neuropathic pain. Pain. 2012;153:2073–82.PubMedCrossRef
84.
go back to reference Stroup TS, Lieberman JA, McEvoy JP, Davis SM, Swartz MS, Keefe RSE, et al. Results of phase 3 of the CATIE schizophrenia trial. Schizophr Res. 2009;107:1–12.PubMedCrossRef Stroup TS, Lieberman JA, McEvoy JP, Davis SM, Swartz MS, Keefe RSE, et al. Results of phase 3 of the CATIE schizophrenia trial. Schizophr Res. 2009;107:1–12.PubMedCrossRef
85.
go back to reference Stroup TS, Mcevoy JP, Swartz MS, Byerly MJ, Qlick ID, Canive JM, et al. The National Institute of Mental Health Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE) project: schizophrenia trial design and protocol development. Schizophr Bull. 2003;29:15–31.PubMedCrossRef Stroup TS, Mcevoy JP, Swartz MS, Byerly MJ, Qlick ID, Canive JM, et al. The National Institute of Mental Health Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE) project: schizophrenia trial design and protocol development. Schizophr Bull. 2003;29:15–31.PubMedCrossRef
88.
go back to reference Chang M, Chow S-C, Pong A. Adaptive design in clinical research: issues, opportunities, and recommendations. J Biopharm Stat. 2006;16:299–309.PubMedCrossRef Chang M, Chow S-C, Pong A. Adaptive design in clinical research: issues, opportunities, and recommendations. J Biopharm Stat. 2006;16:299–309.PubMedCrossRef
89.
go back to reference Papoulis A, Pillai SU. Probability, random variables, and stochastic processes. 4th ed. New York: McGraw-Hill; 2002. Papoulis A, Pillai SU. Probability, random variables, and stochastic processes. 4th ed. New York: McGraw-Hill; 2002.
90.
go back to reference Koller D, Friedman N. Probabilistic graphical models: principles and techniques. Cambridge: MIT Press; 2009. Koller D, Friedman N. Probabilistic graphical models: principles and techniques. Cambridge: MIT Press; 2009.
91.
go back to reference Keefe RSE, Bilder RM, Harvey PD, Davis SM, Palmer BW, Gold JM, et al. Baseline neurocognitive deficits in the CATIE schizophrenia trial. Neuropsychopharmacology. 2006;31:2033–46.PubMedCrossRef Keefe RSE, Bilder RM, Harvey PD, Davis SM, Palmer BW, Gold JM, et al. Baseline neurocognitive deficits in the CATIE schizophrenia trial. Neuropsychopharmacology. 2006;31:2033–46.PubMedCrossRef
92.
go back to reference Keefe RSE, Bilder RM, Davis SM, Harvey PD, Palmer BW, Gold JM, et al. Neurocognitive effects of antipsychotic medications in patients with chronic schizophrenia in the CATIE Trial. Arch Gen Psychiatry. 2007;64:633–47.PubMedCrossRef Keefe RSE, Bilder RM, Davis SM, Harvey PD, Palmer BW, Gold JM, et al. Neurocognitive effects of antipsychotic medications in patients with chronic schizophrenia in the CATIE Trial. Arch Gen Psychiatry. 2007;64:633–47.PubMedCrossRef
93.
go back to reference Hojsgaard S. Graphical independence networks with the gRain package for R. J Stat Softw. 2012;46:1–26. Hojsgaard S. Graphical independence networks with the gRain package for R. J Stat Softw. 2012;46:1–26.
94.
go back to reference Conklin HM, Curtis CE, Katsanis J, Iacono WG. Verbal working memory impairment in schizophrenia patients and their first-degree relatives: evidence from the digit span task. Am J Psychiatry. 2000;157:275–7.PubMedCrossRef Conklin HM, Curtis CE, Katsanis J, Iacono WG. Verbal working memory impairment in schizophrenia patients and their first-degree relatives: evidence from the digit span task. Am J Psychiatry. 2000;157:275–7.PubMedCrossRef
95.
go back to reference Lauritzen SL, Spiegelhalter DJ. Local computations with probabilities on graphical structures and their application to expert systems. J R Stat Soc Ser B. 1988;50:157–224. Lauritzen SL, Spiegelhalter DJ. Local computations with probabilities on graphical structures and their application to expert systems. J R Stat Soc Ser B. 1988;50:157–224.
96.
go back to reference Pearl J. Probabilistic reasoning in intelligent systems. Morgan Kauffman: San Mateo; 1988. Pearl J. Probabilistic reasoning in intelligent systems. Morgan Kauffman: San Mateo; 1988.
97.
go back to reference Roffman JL, Lamberti JS, Achtyes E, Macklin EA, Galendez GC, Raeke LH, et al. Randomized multicenter investigation of folate plus vitamin B12 supplementation in schizophrenia. JAMA Psychiatry. 2013;70:481–9.PubMedPubMedCentralCrossRef Roffman JL, Lamberti JS, Achtyes E, Macklin EA, Galendez GC, Raeke LH, et al. Randomized multicenter investigation of folate plus vitamin B12 supplementation in schizophrenia. JAMA Psychiatry. 2013;70:481–9.PubMedPubMedCentralCrossRef
98.
99.
go back to reference Zou H, Hastie T. Regression shrinkage and selection via the elastic net, with applications to microarrays. J R Stat Soc Ser B. 2003;67:301–20.CrossRef Zou H, Hastie T. Regression shrinkage and selection via the elastic net, with applications to microarrays. J R Stat Soc Ser B. 2003;67:301–20.CrossRef
100.
go back to reference Tibshirani R. Regression shrinkage and selection via the lasso: a retrospective. J R Stat Soc Ser B Stat Methodol. 2011;73:273–82.CrossRef Tibshirani R. Regression shrinkage and selection via the lasso: a retrospective. J R Stat Soc Ser B Stat Methodol. 2011;73:273–82.CrossRef
101.
go back to reference Zou H, Hastie T. Regularization and variable selection via the elastic net. J R Stat Soc Ser B Stat Methodol. 2005;67:301–20.CrossRef Zou H, Hastie T. Regularization and variable selection via the elastic net. J R Stat Soc Ser B Stat Methodol. 2005;67:301–20.CrossRef
102.
go back to reference Saeys Y, Inza I, Larrañaga P. A review of feature selection techniques in bioinformatics. Bioinformatics. 2007;23:2507–17.PubMedCrossRef Saeys Y, Inza I, Larrañaga P. A review of feature selection techniques in bioinformatics. Bioinformatics. 2007;23:2507–17.PubMedCrossRef
103.
go back to reference Guyon I, Elisseeff A. An introduction to variable and feature selection. J Mach Learn Res. 2003;3:1157–82. Guyon I, Elisseeff A. An introduction to variable and feature selection. J Mach Learn Res. 2003;3:1157–82.
104.
go back to reference Bellman RE. Adaptive control processes: a guided tour. Princeton: Princeton University Press; 1961.CrossRef Bellman RE. Adaptive control processes: a guided tour. Princeton: Princeton University Press; 1961.CrossRef
105.
go back to reference Hughes GF. On the mean accuracy of statistical pattern recognizers. IEEE Trans Inf Theory. 1968;14:55–63.CrossRef Hughes GF. On the mean accuracy of statistical pattern recognizers. IEEE Trans Inf Theory. 1968;14:55–63.CrossRef
106.
go back to reference Wallwork RS, Fortgang R, Hashimoto R, Weinberger DR, Dickinson D. Searching for a consensus five-factor model of the Positive and Negative Syndrome Scale for schizophrenia. Schizophr Res. 2012;137:246–50.PubMedPubMedCentralCrossRef Wallwork RS, Fortgang R, Hashimoto R, Weinberger DR, Dickinson D. Searching for a consensus five-factor model of the Positive and Negative Syndrome Scale for schizophrenia. Schizophr Res. 2012;137:246–50.PubMedPubMedCentralCrossRef
107.
go back to reference Daban C, Amado I, Baylé F, Gut A, Willard D, Bourdel MC, et al. Disorganization syndrome is correlated to working memory deficits in unmedicated schizophrenic patients with recent onset schizophrenia. Schizophr Res. 2003;61:323–4.PubMedCrossRef Daban C, Amado I, Baylé F, Gut A, Willard D, Bourdel MC, et al. Disorganization syndrome is correlated to working memory deficits in unmedicated schizophrenic patients with recent onset schizophrenia. Schizophr Res. 2003;61:323–4.PubMedCrossRef
108.
go back to reference Liddle PF. The symptoms of chronic schizophrenia: a re-examination of the positive-negative dichotomy. Br J Psychiatry. 1987;151:145–51.PubMedCrossRef Liddle PF. The symptoms of chronic schizophrenia: a re-examination of the positive-negative dichotomy. Br J Psychiatry. 1987;151:145–51.PubMedCrossRef
109.
go back to reference Nieuwenstein MR, Aleman A, de Haan EHF. Relationship between symptom dimensions and neurocognitive functioning in schizophrenia: a meta-analysis of WCST and CPT studies. J Psychiatr Res. 2001;35:119–25.PubMedCrossRef Nieuwenstein MR, Aleman A, de Haan EHF. Relationship between symptom dimensions and neurocognitive functioning in schizophrenia: a meta-analysis of WCST and CPT studies. J Psychiatr Res. 2001;35:119–25.PubMedCrossRef
111.
go back to reference Borg I, Groenen PJF. Modern multidimensional scaling: theory and applications. 2nd ed. New York: Springer; 2005. Borg I, Groenen PJF. Modern multidimensional scaling: theory and applications. 2nd ed. New York: Springer; 2005.
112.
go back to reference Tu LW. An introduction to manifolds. 2nd ed. New York: Springer; 2010. Tu LW. An introduction to manifolds. 2nd ed. New York: Springer; 2010.
113.
go back to reference De Silva V, Tenenbaum JB. Unsupervised learning of curved manifolds. In: Denison DD, Hansen MH, Holmes CC, Mallick B, Yu B, editors. Nonlinear estimation and classification. New York: Springer; 2003. p. 453–65.CrossRef De Silva V, Tenenbaum JB. Unsupervised learning of curved manifolds. In: Denison DD, Hansen MH, Holmes CC, Mallick B, Yu B, editors. Nonlinear estimation and classification. New York: Springer; 2003. p. 453–65.CrossRef
114.
115.
116.
go back to reference Marquand AF, Wolfers T, Mennes M, Buitelaar J, Beckmann CF. Beyond lumping and splitting: a review of computational approaches for stratifying psychiatric disorders. Biol Psychiatry Cogn Neurosci Neuroimaging. 2016;1:433–47.PubMedPubMedCentralCrossRef Marquand AF, Wolfers T, Mennes M, Buitelaar J, Beckmann CF. Beyond lumping and splitting: a review of computational approaches for stratifying psychiatric disorders. Biol Psychiatry Cogn Neurosci Neuroimaging. 2016;1:433–47.PubMedPubMedCentralCrossRef
117.
go back to reference Gordon DF, Des Jardins M. Evaluation and selection of biases in machine learning. Mach Learn J. 1995;20:1–17. Gordon DF, Des Jardins M. Evaluation and selection of biases in machine learning. Mach Learn J. 1995;20:1–17.
118.
go back to reference Burnham KP, Anderson DR. Model selection and multimodel inference: a practical information-theoretic approach. 2nd ed. New York: Springer; 2002. Burnham KP, Anderson DR. Model selection and multimodel inference: a practical information-theoretic approach. 2nd ed. New York: Springer; 2002.
119.
go back to reference Vehtari A, Ojanen J. A survey of Bayesian predictive methods for model assessment, selection and comparison. Stat Surv. 2012;6:142–228.CrossRef Vehtari A, Ojanen J. A survey of Bayesian predictive methods for model assessment, selection and comparison. Stat Surv. 2012;6:142–228.CrossRef
120.
121.
go back to reference Pearl J. Causal inference in statistics: an overview. Stat Surv. 2009;3:96–146.CrossRef Pearl J. Causal inference in statistics: an overview. Stat Surv. 2009;3:96–146.CrossRef
122.
go back to reference Arlot S, Celisse A. A survey of cross-validation procedures for model selection. Stat Surv. 2010;4:40–79.CrossRef Arlot S, Celisse A. A survey of cross-validation procedures for model selection. Stat Surv. 2010;4:40–79.CrossRef
123.
go back to reference Kohavi R. A Study of Cross-validation and bootstrap for accuracy estimation and model selection. In: Proceedings of 14th international joint conference artificial intelligence. 1995. p. 1137–1143. Kohavi R. A Study of Cross-validation and bootstrap for accuracy estimation and model selection. In: Proceedings of 14th international joint conference artificial intelligence. 1995. p. 1137–1143.
124.
go back to reference Young J, Kempton MJ, McGuire P. Using machine learning to predict outcomes in psychosis. Lancet Psychiatry. 2016;3:908–9.PubMedCrossRef Young J, Kempton MJ, McGuire P. Using machine learning to predict outcomes in psychosis. Lancet Psychiatry. 2016;3:908–9.PubMedCrossRef
125.
go back to reference R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. http://www.R-project.org (2008). R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. http://​www.​R-project.​org (2008).
126.
go back to reference Wickham H. ggplot2: elegant graphics for data analysis. New York: Springer; 2009. Wickham H. ggplot2: elegant graphics for data analysis. New York: Springer; 2009.
128.
go back to reference Wickham H. Reshaping data with the reshape package. J Stat Softw. 2007;21(12):1–20.CrossRef Wickham H. Reshaping data with the reshape package. J Stat Softw. 2007;21(12):1–20.CrossRef
129.
go back to reference Højsgaard S. Graphical independence networks with the gRain package for R. J Stat Softw. 2012;46(10):1–26. Højsgaard S. Graphical independence networks with the gRain package for R. J Stat Softw. 2012;46(10):1–26.
130.
go back to reference Venables WN, Ripley BD. Modern applied statistics with S. 4th ed. New York:Springer; 2002. ISBN 0-387-95457-0. Venables WN, Ripley BD. Modern applied statistics with S. 4th ed. New York:Springer; 2002. ISBN 0-387-95457-0.
131.
132.
go back to reference Kuhn M (co-authors: Wing J, Weston S, Williams A, Keefer C, Engelhardt A, Cooper T, Mayer Z, Kenkel B, The R Core Team, Benesty M, Lescarbeau R, Ziem A, Scrucca L, Tang Y, Candan C). caret: classification and regression training. R package version 6.0-64. https://CRAN.R-project.org/package=caret. (2016). Kuhn M (co-authors: Wing J, Weston S, Williams A, Keefer C, Engelhardt A, Cooper T, Mayer Z, Kenkel B, The R Core Team, Benesty M, Lescarbeau R, Ziem A, Scrucca L, Tang Y, Candan C). caret: classification and regression training. R package version 6.0-64. https://​CRAN.​R-project.​org/​package=​caret. (2016).
135.
go back to reference Kane JM, D'Souza DC, Patkar AA, Youakim JM, Tiller JM, Yang R, Keefe RS. Armodafinil as adjunctive therapy in adults with cognitive deficits associated with schizophrenia: a 4-week, double-blind, placebo-controlled study. J Clin Psychiatry. 2010;71:1475–81. doi:10.4088/JCP.09m05950gry.PubMedCrossRef Kane JM, D'Souza DC, Patkar AA, Youakim JM, Tiller JM, Yang R, Keefe RS. Armodafinil as adjunctive therapy in adults with cognitive deficits associated with schizophrenia: a 4-week, double-blind, placebo-controlled study. J Clin Psychiatry. 2010;71:1475–81. doi:10.​4088/​JCP.​09m05950gry.PubMedCrossRef
137.
go back to reference Egan MF, Zhao X, Gottwald R, Harper-Mozley L, Zhang Y, Snavely D, Lines C, Michelson D. Randomized crossover study of the histamine H3 inverse agonist MK-0249 for the treatment of cognitive impairment in patients with schizophrenia. Schizophr Res. 2013;146:224–30. doi:10.1016/j.schres.2013.02.030.CrossRef Egan MF, Zhao X, Gottwald R, Harper-Mozley L, Zhang Y, Snavely D, Lines C, Michelson D. Randomized crossover study of the histamine H3 inverse agonist MK-0249 for the treatment of cognitive impairment in patients with schizophrenia. Schizophr Res. 2013;146:224–30. doi:10.​1016/​j.​schres.​2013.​02.​030.CrossRef
140.
go back to reference Goff DC, Herz L, Posever T, Shih V, Tsai G, Henderson DC, Freudenreich O, Evins OE, Yovel I, Zhang H, Schoenfeld D. A six-month, placebo-controlled trial of d-cycloserine co-administered with conventional antipsychotics in schizophrenia patients. Psychopharmacology. 2005;179(1):144–50. doi:10.1007/s00213-004-2032-2.PubMedCrossRef Goff DC, Herz L, Posever T, Shih V, Tsai G, Henderson DC, Freudenreich O, Evins OE, Yovel I, Zhang H, Schoenfeld D. A six-month, placebo-controlled trial of d-cycloserine co-administered with conventional antipsychotics in schizophrenia patients. Psychopharmacology. 2005;179(1):144–50. doi:10.​1007/​s00213-004-2032-2.PubMedCrossRef
Metadata
Title
Realising stratified psychiatry using multidimensional signatures and trajectories
Authors
Dan W. Joyce
Angie A. Kehagia
Derek K. Tracy
Jessica Proctor
Sukhwinder S. Shergill
Publication date
01-12-2017
Publisher
BioMed Central
Published in
Journal of Translational Medicine / Issue 1/2017
Electronic ISSN: 1479-5876
DOI
https://doi.org/10.1186/s12967-016-1116-1

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